Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0016329

Physical Location & Seq

Genomic Coordinates Reverse (-)

3570029 .. 3570788

Gene Structure 760 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g06081.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCGTCCACCATGGTTATCAAGGTTCGATATTTTGGAACTTCAAAGGTTAAAGTTGCGGGCAGAGAGAGGTATTTGAAAGCTCGGATTGATGAGAATGGCCAACTGGGTTTTGACATGGGTGGTTTGAGGGAAAAAATCTGCCGGATTTGTGATCTCCCACCTGGTTCAGACATTACTCTAGTGTACATCGATGAAGATGGTGATGTAGTAACTCTGGTTGATGACGATGATCTGCAAGACGCAATGAGGCAGCATCTGAAATCCTTCAGGATTGATGTACTGATGAACGATAACAAACTTTATCGCAAATCAAGCTCCGATAACAAAGTTCGTCACAAATCAAGCTCCAAAAGGAGTACTCGAGTGATGATGGATCCTGTTGGATCAAGTCTTGGCACTAGTGATGACAATATGGAGACCAAGAAGGCTAGTACCAGTAGTTATGCAACTAGTGATTATGGTTATAAACTTGGACATTCTTTCCATGAATGCTCCTTCATTGGAGATGACCCAGTTAATCCTCATGTTGCTTGTTTTAAAGGGAATTACTTGGAAGCCATAGGTGGTATGCTGCTTCAAACCGGTGTCAGATGTAATGGCTGTGGTTGCAATCCACTAACTGGATCTAGGTTCAAGTCTATTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000323 GO:0000324 GO:0000328 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005773 GO:0005775 GO:0005829 GO:0006914 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0012505 GO:0016043 GO:0016236 GO:0022607 GO:0031410 GO:0031974 GO:0031982 GO:0032182 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034622 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051258 GO:0051259 GO:0051641 GO:0061919 GO:0061957 GO:0065003 GO:0070013 GO:0070727 GO:0071840 GO:0072665 GO:0097708 GO:0120113

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

N_BRCA1_IG PB1 ZZ

Protein Analysis

217

Amino Acids

23.9

Weight (kDa)

8.11

Isoelectric Point (pI)

29.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PB1	PF00564	42 - 89	1.7e-09	PB1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016329)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g06081
malus_domestica	MD06G1166000.v1.1
prunus_persica	Prupe.5G165900_v2.0.a1
pyrus_communis	pycom06g14850
rosa_chinensis	RchiOBHm_Chr7g0192771
rosa_laevigata	RLG00000004330
rosa_multiflora	Rmu_sc0002040.1_g000018
rosa_roxburghii	Rroxscaffold_3G00262700
rosa_rugosa	Rorug07G0004500 Rorug07G0004500
rosa_samantha	Rh7AG129600 Rh7BG130900 Rh7CG134300 Rh7DG131800
rosa_wichuraiana	Rw7G011090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	468
AccB7I	CCANNNNNTGG	1 cut(s)	623
AciI	CCGC	1 cut(s)	59
AclWI	GGATC	4 cut(s)	371, 384, 394, 634
AcoI	YGGCCR	1 cut(s)	100
AcuI	CTGAAG	1 cut(s)	253
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	4 cut(s)	188, 282, 361, 436
AfiI	CCNNNNNNNGG	1 cut(s)	623
AgeI	ACCGGT	1 cut(s)	584
AgsI	TTSAA	4 cut(s)	45, 79, 581, 637
AhlI	ACTAGT	2 cut(s)	401, 452
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	3 cut(s)	83, 318, 348
AluI	AGCT	3 cut(s)	83, 318, 348
Alw26I	GTCTC	1 cut(s)	413
AlwI	GGATC	4 cut(s)	371, 384, 394, 634
AlwNI	CAGNNNCTG	1 cut(s)	259
Ama87I	CYCGRG	1 cut(s)	363
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	2 cut(s)	253, 574
AsiGI	ACCGGT	1 cut(s)	584
Asp700I	GAANNNNTTC	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	215
AvaI	CYCGRG	1 cut(s)	363
BalI	TGGCCA	1 cut(s)	102
BamHI	GGATCC	1 cut(s)	376
BbvI	GCAGC	2 cut(s)	265, 561
BccI	CCATC	2 cut(s)	194, 367
BciT130I	CCWGG	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	413
BcuI	ACTAGT	2 cut(s)	401, 452
BfaI	CTAG	5 cut(s)	182, 402, 432, 453, 630
BisI	GCNGC	2 cut(s)	254, 575
BlsI	GCNGC	2 cut(s)	255, 576
BmcAI	AGTACT	1 cut(s)	361
Bme1390I	CCNGG	1 cut(s)	165
BmeT110I	CYCGRG	1 cut(s)	363
BmiI	GGNNCC	1 cut(s)	378
BmrFI	CCNGG	1 cut(s)	165
BmrI	ACTGGG	2 cut(s)	116, 509
BmsI	GCATC	1 cut(s)	265
BmuI	ACTGGG	2 cut(s)	116, 509
Bsa29I	ATCGAT	1 cut(s)	192
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	413
BsaJI	CCNNGG	1 cut(s)	12
BsaWI	WCCGGW	1 cut(s)	584
Bsc4I	CCNNNNNNNGG	1 cut(s)	623
Bse118I	RCCGGY	1 cut(s)	584
Bse1I	ACTGG	4 cut(s)	111, 438, 515, 628
Bse3DI	GCAATG	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	165
BseCI	ATCGAT	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	12
BseLI	CCNNNNNNNGG	1 cut(s)	623
BseMI	GCAATG	1 cut(s)	252
BseNI	ACTGG	4 cut(s)	111, 438, 515, 628
BseXI	GCAGC	2 cut(s)	265, 561
BshFI	GGCC	1 cut(s)	102
BshTI	ACCGGT	1 cut(s)	584
BshVI	ATCGAT	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	363
BsiSI	CCGG	2 cut(s)	145, 585
BslI	CCNNNNNNNGG	1 cut(s)	623
BsmAI	GTCTC	1 cut(s)	413
BsmI	GAATGC	1 cut(s)	497
BsnI	GGCC	1 cut(s)	102
Bso31I	GGTCTC	1 cut(s)	413
BsoBI	CYCGRG	1 cut(s)	363
Bsp1407I	TGTACA	1 cut(s)	186
Bsp143I	GATC	5 cut(s)	154, 232, 376, 386, 626
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	1 cut(s)	102
BspDI	ATCGAT	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	378
BspPI	GGATC	4 cut(s)	371, 384, 394, 634
BspTNI	GGTCTC	1 cut(s)	413
BsrDI	GCAATG	1 cut(s)	252
BsrFI	RCCGGY	1 cut(s)	584
BsrGI	TGTACA	1 cut(s)	186
BsrI	ACTGG	4 cut(s)	111, 438, 515, 628
BssAI	RCCGGY	1 cut(s)	584
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	5 cut(s)	154, 232, 376, 386, 626
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	165
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	1 cut(s)	186
BstC8I	GCNNGC	1 cut(s)	61
BstDSI	CCRYGG	1 cut(s)	12
BstKTI	GATC	5 cut(s)	157, 235, 379, 389, 629
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	5 cut(s)	154, 232, 376, 386, 626
BstMWI	GCNNNNNNNGC	2 cut(s)	315, 609
BstNI	CCWGG	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	163
BstV1I	GCAGC	2 cut(s)	265, 561
BstX2I	RGATCY	2 cut(s)	376, 626
BstYI	RGATCY	2 cut(s)	376, 626
Bsu15I	ATCGAT	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	102
BsuTUI	ATCGAT	1 cut(s)	192
BtgI	CCRYGG	1 cut(s)	12
Cac8I	GCNNGC	1 cut(s)	61
CaiI	CAGNNNCTG	1 cut(s)	259
Cfr10I	RCCGGY	1 cut(s)	584
ClaI	ATCGAT	1 cut(s)	192
CseI	GACGC	1 cut(s)	251
CsiI	ACCWGGT	1 cut(s)	163
Csp6I	GTAC	4 cut(s)	187, 281, 360, 435
CspAI	ACCGGT	1 cut(s)	584
CviAII	CATG	4 cut(s)	13, 118, 488, 527
CviJI	RGCY	7 cut(s)	83, 102, 318, 348, 431, 560, 603
CviKI_1	RGCY	7 cut(s)	83, 102, 318, 348, 431, 560, 603
CviQI	GTAC	4 cut(s)	187, 281, 360, 435
DpnI	GATC	5 cut(s)	156, 234, 378, 388, 628
DpnII	GATC	5 cut(s)	154, 232, 376, 386, 626
DraI	TTTAAA	1 cut(s)	541
EaeI	YGGCCR	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	12
Eco31I	GGTCTC	1 cut(s)	413
Eco57I	CTGAAG	1 cut(s)	253
Eco88I	CYCGRG	1 cut(s)	363
EcoRII	CCWGG	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	4 cut(s)	16, 121, 491, 530
FatI	CATG	4 cut(s)	12, 117, 487, 526
FauI	CCCGC	1 cut(s)	52
Fnu4HI	GCNGC	2 cut(s)	254, 575
Fsp4HI	GCNGC	2 cut(s)	254, 575
FspBI	CTAG	5 cut(s)	182, 402, 432, 453, 630
GluI	GCNGC	2 cut(s)	254, 575
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	2 cut(s)	145, 585
HgaI	GACGC	1 cut(s)	251
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	16, 121, 491, 530
HpaII	CCGG	2 cut(s)	145, 585
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	2 cut(s)	9, 187
Hpy188I	TCNGA	5 cut(s)	87, 172, 261, 322, 593
Hpy188III	TCNNGA	1 cut(s)	271
Hpy8I	GTNNAC	2 cut(s)	9, 187
HpyAV	CCTTC	3 cut(s)	277, 421, 508
HpyCH4V	TGCA	3 cut(s)	238, 449, 612
HpyF10VI	GCNNNNNNNGC	2 cut(s)	315, 609
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	16, 121, 491, 530
Kzo9I	GATC	5 cut(s)	154, 232, 376, 386, 626
LmnI	GCTCC	3 cut(s)	323, 353, 500
Lsp1109I	GCAGC	2 cut(s)	265, 561
LweI	GCATC	1 cut(s)	265
MabI	ACCWGGT	1 cut(s)	163
MaeI	CTAG	5 cut(s)	182, 402, 432, 453, 630
MaeIII	GTNAC	2 cut(s)	211, 335
MalI	GATC	5 cut(s)	156, 234, 378, 388, 628
MboI	GATC	5 cut(s)	154, 232, 376, 386, 626
MboII	GAAGA	1 cut(s)	209
MflI	RGATCY	2 cut(s)	376, 626
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	1 cut(s)	547
MluNI	TGGCCA	1 cut(s)	102
MmeI	TCCRAC	1 cut(s)	364
MnlI	CCTC	4 cut(s)	63, 123, 243, 534
Mox20I	TGGCCA	1 cut(s)	102
MroXI	GAANNNNTTC	1 cut(s)	266
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	3 cut(s)	51, 519, 540
Msp20I	TGGCCA	1 cut(s)	102
MspI	CCGG	2 cut(s)	145, 585
MspR9I	CCNGG	1 cut(s)	165
Mva1269I	GAATGC	1 cut(s)	497
MvaI	CCWGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	2 cut(s)	315, 609
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	5 cut(s)	154, 232, 376, 386, 626
NlaIII	CATG	4 cut(s)	16, 121, 491, 530
NlaIV	GGNNCC	1 cut(s)	378
NmuCI	GTSAC	1 cut(s)	335
PaeR7I	CTCGAG	1 cut(s)	363
PctI	GAATGC	1 cut(s)	497
PdmI	GAANNNNTTC	1 cut(s)	266
PflMI	CCANNNNNTGG	1 cut(s)	623
PinAI	ACCGGT	1 cut(s)	584
PkrI	GCNGC	2 cut(s)	255, 576
PsiI	TTATAA	1 cut(s)	468
Psp6I	CCWGG	1 cut(s)	163
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	378
PspXI	VCTCGAGB	1 cut(s)	363
PstNI	CAGNNNCTG	1 cut(s)	259
PsuI	RGATCY	2 cut(s)	376, 626
RsaI	GTAC	4 cut(s)	188, 282, 361, 436
RsaNI	GTAC	4 cut(s)	187, 281, 360, 435
SaqAI	TTAA	3 cut(s)	51, 519, 540
SatI	GCNGC	2 cut(s)	254, 575
Sau3AI	GATC	5 cut(s)	154, 232, 376, 386, 626
ScaI	AGTACT	1 cut(s)	361
ScrFI	CCNGG	1 cut(s)	165
SetI	ASST	9 cut(s)	27, 51, 74, 85, 166, 320, 350, 568, 635
SexAI	ACCWGGT	1 cut(s)	163
SfaNI	GCATC	1 cut(s)	265
Sfr274I	CTCGAG	1 cut(s)	363
SlaI	CTCGAG	1 cut(s)	363
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
SpeI	ACTAGT	2 cut(s)	401, 452
Sse9I	AATT	1 cut(s)	547
SsiI	CCGC	1 cut(s)	59
SspMI	CTAG	5 cut(s)	182, 402, 432, 453, 630
StyD4I	CCNGG	1 cut(s)	163
StyI	CCWWGG	1 cut(s)	12
TaqI	TCGA	3 cut(s)	28, 192, 364
TasI	AATT	1 cut(s)	547
TatI	WGTACW	3 cut(s)	186, 280, 359
Tru1I	TTAA	3 cut(s)	51, 519, 540
Tru9I	TTAA	3 cut(s)	51, 519, 540
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	2 cut(s)	253, 574
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	4 cut(s)	210, 302, 490, 504
Van91I	CCANNNNNTGG	1 cut(s)	623
XhoI	CTCGAG	1 cut(s)	363
XmnI	GAANNNNTTC	1 cut(s)	266
XspI	CTAG	5 cut(s)	182, 402, 432, 453, 630
ZrmI	AGTACT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.