zinc ion binding
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Gly-rich_Ago1 | PF12764 | 109 - 206 | 5.3e-24 | Glycine-rich region of argonaut |
| ArgoN | PF16486 | 226 - 361 | 1.4e-37 | N-terminal domain of argonaute |
| ArgoL1 | PF08699 | 371 - 421 | 1.3e-21 | Argonaute linker 1 domain |
| PAZ | PF02170 | 427 - 553 | 3.3e-30 | PAZ domain |
| ArgoL2 | PF16488 | 563 - 609 | 7.6e-18 | Argonaute linker 2 domain |
| ArgoMid | PF16487 | 620 - 695 | 1.5e-09 | Mid domain of argonaute |
| Piwi | PF02171 | 712 - 1031 | 7.2e-116 | Piwi domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2135 |
| Acc16I | TGCGCA | 1 cut(s) | 1403 |
| Acc36I | ACCTGC | 3 cut(s) | 556, 1011, 3229 |
| AccB1I | GGYRCC | 1 cut(s) | 104 |
| AccI | GTMKAC | 1 cut(s) | 869 |
| AccII | CGCG | 1 cut(s) | 612 |
| AclI | AACGTT | 1 cut(s) | 2271 |
| AclWI | GGATC | 9 cut(s) | 139, 259, 732, 1733, 1931, 2195, 2208, 2534, 2547 |
| AcoI | YGGCCR | 2 cut(s) | 289, 2453 |
| AcsI | RAATTY | 3 cut(s) | 983, 1933, 2907 |
| AcuI | CTGAAG | 4 cut(s) | 525, 545, 1046, 1755 |
| AdeI | CACNNNGTG | 3 cut(s) | 678, 773, 1163 |
| AflIII | ACRYGT | 2 cut(s) | 610, 2236 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1716 |
| AjiI | CACGTC | 1 cut(s) | 3143 |
| AjnI | CCWGG | 8 cut(s) | 418, 652, 1050, 1135, 1434, 2333, 2401, 2836 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 10, 42 |
| Alw21I | GWGCWC | 7 cut(s) | 211, 2053, 2491, 2511, 3136, 3182, 3190 |
| Alw26I | GTCTC | 6 cut(s) | 625, 798, 1022, 1636, 2189, 3095 |
| AlwI | GGATC | 9 cut(s) | 139, 259, 732, 1733, 1931, 2195, 2208, 2534, 2547 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1297 |
| Ama87I | CYCGRG | 1 cut(s) | 3183 |
| ApeKI | GCWGC | 8 cut(s) | 71, 451, 556, 989, 2429, 2895, 3068, 3203 |
| ApoI | RAATTY | 3 cut(s) | 983, 1933, 2907 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 902, 1500 |
| AspLEI | GCGC | 3 cut(s) | 1404, 1680, 2381 |
| AspS9I | GGNCC | 9 cut(s) | 329, 362, 410, 425, 878, 949, 1057, 2656, 3194 |
| AsuC2I | CCSGG | 2 cut(s) | 2115, 3192 |
| AsuHPI | GGTGA | 7 cut(s) | 16, 429, 481, 1175, 1678, 2186, 2858 |
| AvaI | CYCGRG | 1 cut(s) | 3183 |
| AvaII | GGWCC | 3 cut(s) | 410, 878, 3194 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2832, 2865 |
| BamHI | GGATCC | 1 cut(s) | 2539 |
| BanI | GGYRCC | 1 cut(s) | 104 |
| BanII | GRGCYC | 3 cut(s) | 211, 2031, 2511 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 238, 270 |
| BauI | CACGAG | 1 cut(s) | 993 |
| BbsI | GAAGAC | 2 cut(s) | 1156, 1541 |
| Bbv12I | GWGCWC | 7 cut(s) | 211, 2053, 2491, 2511, 3136, 3182, 3190 |
| BbvCI | CCTCAGC | 2 cut(s) | 369, 495 |
| BbvI | GCAGC | 8 cut(s) | 58, 438, 568, 976, 2441, 2907, 3055, 3190 |
| BccI | CCATC | 8 cut(s) | 436, 581, 831, 845, 2428, 2505, 2636, 2802 |
| BceAI | ACGGC | 1 cut(s) | 276 |
| BciT130I | CCWGG | 8 cut(s) | 420, 654, 1052, 1137, 1436, 2335, 2403, 2838 |
| BciVI | GTATCC | 1 cut(s) | 2224 |
| BclI | TGATCA | 1 cut(s) | 2059 |
| BcnI | CCSGG | 2 cut(s) | 2115, 3192 |
| BcoDI | GTCTC | 6 cut(s) | 625, 798, 1022, 1636, 2189, 3095 |
| BfaI | CTAG | 7 cut(s) | 30, 594, 624, 800, 1101, 2210, 3262 |
| BfmI | CTRYAG | 2 cut(s) | 2635, 2893 |
| BfoI | RGCGCY | 2 cut(s) | 1681, 2382 |
| BfuAI | ACCTGC | 3 cut(s) | 556, 1011, 3229 |
| BfuI | GTATCC | 1 cut(s) | 2224 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 297 |
| BmcAI | AGTACT | 1 cut(s) | 2316 |
| Bme18I | GGWCC | 3 cut(s) | 410, 878, 3194 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1716 |
| BmeT110I | CYCGRG | 1 cut(s) | 3183 |
| BmgBI | CACGTC | 1 cut(s) | 3143 |
| BmgT120I | GGNCC | 9 cut(s) | 329, 362, 410, 425, 878, 949, 1057, 2656, 3194 |
| BmiI | GGNNCC | 8 cut(s) | 58, 106, 115, 641, 2541, 2721, 3096, 3195 |
| BmrI | ACTGGG | 2 cut(s) | 461, 2212 |
| BmsI | GCATC | 7 cut(s) | 1033, 1425, 2086, 2314, 2634, 2680, 2962 |
| BmuI | ACTGGG | 2 cut(s) | 461, 2212 |
| BpiI | GAAGAC | 2 cut(s) | 1156, 1541 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 628, 660 |
| BpmI | CTGGAG | 4 cut(s) | 738, 2317, 2738, 2963 |
| Bpu10I | CCTNAGC | 5 cut(s) | 369, 495, 534, 1785, 2025 |
| BpuEI | CTTGAG | 4 cut(s) | 1646, 1668, 2430, 2475 |
| BpuMI | CCSGG | 2 cut(s) | 2115, 3192 |
| BsaAI | YACGTR | 1 cut(s) | 1364 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1335 |
| BsaI | GGTCTC | 2 cut(s) | 1022, 3095 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 736, 766, 803, 833, 1359, 1389, 1896, 1926 |
| Bse118I | RCCGGY | 1 cut(s) | 834 |
| Bse3DI | GCAATG | 3 cut(s) | 1265, 2106, 2812 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1335 |
| BseBI | CCWGG | 8 cut(s) | 420, 654, 1052, 1137, 1436, 2335, 2403, 2838 |
| BseJI | GATNNNNATC | 1 cut(s) | 1335 |
| BseMI | GCAATG | 3 cut(s) | 1265, 2106, 2812 |
| BseRI | GAGGAG | 5 cut(s) | 28, 198, 357, 399, 944 |
| BseXI | GCAGC | 8 cut(s) | 58, 438, 568, 976, 2441, 2907, 3055, 3190 |
| BseYI | CCCAGC | 3 cut(s) | 60, 1290, 2926 |
| BsgI | GTGCAG | 4 cut(s) | 437, 713, 989, 3207 |
| Bsh1236I | CGCG | 1 cut(s) | 612 |
| Bsh1285I | CGRYCG | 3 cut(s) | 403, 2359, 2847 |
| BshNI | GGYRCC | 1 cut(s) | 104 |
| BsiEI | CGRYCG | 3 cut(s) | 403, 2359, 2847 |
| BsiHKAI | GWGCWC | 7 cut(s) | 211, 2053, 2491, 2511, 3136, 3182, 3190 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3183 |
| BsiSI | CCGG | 5 cut(s) | 108, 835, 2114, 2456, 3191 |
| BslFI | GGGAC | 7 cut(s) | 51, 948, 1417, 1626, 2316, 2566, 2968 |
| BsmAI | GTCTC | 6 cut(s) | 625, 798, 1022, 1636, 2189, 3095 |
| BsmBI | CGTCTC | 1 cut(s) | 2189 |
| BsmFI | GGGAC | 7 cut(s) | 51, 948, 1417, 1626, 2316, 2566, 2968 |
| Bso31I | GGTCTC | 2 cut(s) | 1022, 3095 |
| BsoBI | CYCGRG | 1 cut(s) | 3183 |
| Bsp1286I | GDGCHC | 8 cut(s) | 211, 2031, 2053, 2491, 2511, 3136, 3182, 3190 |
| Bsp1407I | TGTACA | 2 cut(s) | 680, 3020 |
| Bsp19I | CCATGG | 1 cut(s) | 1587 |
| BspFNI | CGCG | 1 cut(s) | 612 |
| BspHI | TCATGA | 1 cut(s) | 1504 |
| BspLI | GGNNCC | 8 cut(s) | 58, 106, 115, 641, 2541, 2721, 3096, 3195 |
| BspMAI | CTGCAG | 1 cut(s) | 2897 |
| BspMI | ACCTGC | 3 cut(s) | 556, 1011, 3229 |
| BspPI | GGATC | 9 cut(s) | 139, 259, 732, 1733, 1931, 2195, 2208, 2534, 2547 |
| BspQI | GCTCTTC | 1 cut(s) | 854 |
| BspT107I | GGYRCC | 1 cut(s) | 104 |
| BspTNI | GGTCTC | 2 cut(s) | 1022, 3095 |
| BsrDI | GCAATG | 3 cut(s) | 1265, 2106, 2812 |
| BsrFI | RCCGGY | 1 cut(s) | 834 |
| BsrGI | TGTACA | 2 cut(s) | 680, 3020 |
| BssAI | RCCGGY | 1 cut(s) | 834 |
| BssNAI | GTATAC | 1 cut(s) | 870 |
| BssSI | CACGAG | 1 cut(s) | 993 |
| BssT1I | CCWWGG | 4 cut(s) | 118, 238, 1587, 2346 |
| Bst1107I | GTATAC | 1 cut(s) | 870 |
| Bst2BI | CACGAG | 1 cut(s) | 993 |
| Bst2UI | CCWGG | 8 cut(s) | 420, 654, 1052, 1137, 1436, 2335, 2403, 2838 |
| Bst6I | CTCTTC | 6 cut(s) | 5, 241, 651, 854, 888, 921 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2273, 3056 |
| BstAUI | TGTACA | 2 cut(s) | 680, 3020 |
| BstBAI | YACGTR | 1 cut(s) | 1364 |
| BstC8I | GCNNGC | 4 cut(s) | 501, 836, 1181, 1856 |
| BstDSI | CCRYGG | 3 cut(s) | 292, 1587, 1814 |
| BstEII | GGTNACC | 3 cut(s) | 161, 233, 1666 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 372, 2400 |
| BstFNI | CGCG | 1 cut(s) | 612 |
| BstH2I | RGCGCY | 2 cut(s) | 1681, 2382 |
| BstHHI | GCGC | 3 cut(s) | 1404, 1680, 2381 |
| BstMAI | GTCTC | 6 cut(s) | 625, 798, 1022, 1636, 2189, 3095 |
| BstMCI | CGRYCG | 3 cut(s) | 403, 2359, 2847 |
| BstNI | CCWGG | 8 cut(s) | 420, 654, 1052, 1137, 1436, 2335, 2403, 2838 |
| BstNSI | RCATGY | 1 cut(s) | 2240 |
| BstPI | GGTNACC | 3 cut(s) | 161, 233, 1666 |
| BstSFI | CTRYAG | 2 cut(s) | 2635, 2893 |
| BstUI | CGCG | 1 cut(s) | 612 |
| BstV1I | GCAGC | 8 cut(s) | 58, 438, 568, 976, 2441, 2907, 3055, 3190 |
| BstV2I | GAAGAC | 2 cut(s) | 1156, 1541 |
| BstX2I | RGATCY | 8 cut(s) | 131, 251, 724, 1738, 1923, 2187, 2200, 2539 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1835 |
| BstYI | RGATCY | 8 cut(s) | 131, 251, 724, 1738, 1923, 2187, 2200, 2539 |
| BstZ17I | GTATAC | 1 cut(s) | 870 |
| BsuI | GTATCC | 1 cut(s) | 2224 |
| BtgI | CCRYGG | 3 cut(s) | 292, 1587, 1814 |
| BtrI | CACGTC | 1 cut(s) | 3143 |
| BtsIMutI | CAGTG | 8 cut(s) | 400, 1877, 1963, 2053, 2225, 2537, 2714, 3224 |
| BveI | ACCTGC | 3 cut(s) | 556, 1011, 3229 |
| Cac8I | GCNNGC | 4 cut(s) | 501, 836, 1181, 1856 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1297 |
| CciI | TCATGA | 1 cut(s) | 1504 |
| CfoI | GCGC | 3 cut(s) | 1404, 1680, 2381 |
| Cfr10I | RCCGGY | 1 cut(s) | 834 |
| Cfr13I | GGNCC | 9 cut(s) | 329, 362, 410, 425, 878, 949, 1057, 2656, 3194 |
| CseI | GACGC | 2 cut(s) | 53, 2753 |
| CsiI | ACCWGGT | 1 cut(s) | 2836 |
| DraI | TTTAAA | 3 cut(s) | 1230, 2181, 2527 |
| DraIII | CACNNNGTG | 3 cut(s) | 678, 773, 1163 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2135 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1716 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2135 |
| EaeI | YGGCCR | 2 cut(s) | 289, 2453 |
| Eam1104I | CTCTTC | 6 cut(s) | 5, 241, 651, 854, 888, 921 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1716 |
| EarI | CTCTTC | 6 cut(s) | 5, 241, 651, 854, 888, 921 |
| EciI | GGCGGA | 2 cut(s) | 126, 201 |
| Ecl136II | GAGCTC | 2 cut(s) | 209, 2509 |
| Eco130I | CCWWGG | 4 cut(s) | 118, 238, 1587, 2346 |
| Eco147I | AGGCCT | 2 cut(s) | 2705, 3214 |
| Eco24I | GRGCYC | 3 cut(s) | 211, 2031, 2511 |
| Eco31I | GGTCTC | 2 cut(s) | 1022, 3095 |
| Eco47I | GGWCC | 3 cut(s) | 410, 878, 3194 |
| Eco53kI | GAGCTC | 2 cut(s) | 209, 2509 |
| Eco57I | CTGAAG | 4 cut(s) | 525, 545, 1046, 1755 |
| Eco88I | CYCGRG | 1 cut(s) | 3183 |
| Eco91I | GGTNACC | 3 cut(s) | 161, 233, 1666 |
| EcoICRI | GAGCTC | 2 cut(s) | 209, 2509 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 372, 2400 |
| EcoO109I | RGGNCCY | 3 cut(s) | 362, 410, 1057 |
| EcoO65I | GGTNACC | 3 cut(s) | 161, 233, 1666 |
| EcoRI | GAATTC | 1 cut(s) | 2907 |
| EcoRII | CCWGG | 8 cut(s) | 418, 652, 1050, 1135, 1434, 2333, 2401, 2836 |
| EcoT14I | CCWWGG | 4 cut(s) | 118, 238, 1587, 2346 |
| EcoT38I | GRGCYC | 3 cut(s) | 211, 2031, 2511 |
| ErhI | CCWWGG | 4 cut(s) | 118, 238, 1587, 2346 |
| Esp3I | CGTCTC | 1 cut(s) | 2189 |
| FaqI | GGGAC | 7 cut(s) | 51, 948, 1417, 1626, 2316, 2566, 2968 |
| FauI | CCCGC | 2 cut(s) | 76, 1949 |
| FauNDI | CATATG | 1 cut(s) | 3010 |
| FbaI | TGATCA | 1 cut(s) | 2059 |
| FblI | GTMKAC | 1 cut(s) | 869 |
| FriOI | GRGCYC | 3 cut(s) | 211, 2031, 2511 |
| FspBI | CTAG | 7 cut(s) | 30, 594, 624, 800, 1101, 2210, 3262 |
| FspI | TGCGCA | 1 cut(s) | 1403 |
| GlaI | GCGC | 3 cut(s) | 1403, 1679, 2380 |
| GsaI | CCCAGC | 3 cut(s) | 64, 1294, 2930 |
| GsuI | CTGGAG | 4 cut(s) | 738, 2317, 2738, 2963 |
| HaeII | RGCGCY | 2 cut(s) | 1681, 2382 |
| HapII | CCGG | 5 cut(s) | 108, 835, 2114, 2456, 3191 |
| HgaI | GACGC | 2 cut(s) | 53, 2753 |
| HhaI | GCGC | 3 cut(s) | 1404, 1680, 2381 |
| Hin6I | GCGC | 3 cut(s) | 1402, 1678, 2379 |
| HinP1I | GCGC | 3 cut(s) | 1402, 1678, 2379 |
| HpaII | CCGG | 5 cut(s) | 108, 835, 2114, 2456, 3191 |
| HphI | GGTGA | 7 cut(s) | 16, 429, 481, 1175, 1678, 2186, 2858 |
| Hpy188I | TCNGA | 9 cut(s) | 49, 448, 544, 971, 1330, 1336, 1992, 3077, 3109 |
| Hpy99I | CGWCG | 1 cut(s) | 957 |
| HpyCH4IV | ACGT | 6 cut(s) | 1363, 1430, 1717, 1947, 2271, 3142 |
| HpySE526I | ACGT | 6 cut(s) | 1363, 1430, 1717, 1947, 2271, 3142 |
| HspAI | GCGC | 3 cut(s) | 1402, 1678, 2379 |
| KroI | GCCGGC | 1 cut(s) | 834 |
| KroNI | GCCGGC | 1 cut(s) | 836 |
| Ksp22I | TGATCA | 1 cut(s) | 2059 |
| LguI | GCTCTTC | 1 cut(s) | 854 |
| Lsp1109I | GCAGC | 8 cut(s) | 58, 438, 568, 976, 2441, 2907, 3055, 3190 |
| LweI | GCATC | 7 cut(s) | 1033, 1425, 2086, 2314, 2634, 2680, 2962 |
| MabI | ACCWGGT | 1 cut(s) | 2836 |
| MaeI | CTAG | 7 cut(s) | 30, 594, 624, 800, 1101, 2210, 3262 |
| MaeII | ACGT | 6 cut(s) | 1363, 1430, 1717, 1947, 2271, 3142 |
| MfeI | CAATTG | 3 cut(s) | 1918, 2424, 2811 |
| MflI | RGATCY | 8 cut(s) | 131, 251, 724, 1738, 1923, 2187, 2200, 2539 |
| MhlI | GDGCHC | 8 cut(s) | 211, 2031, 2053, 2491, 2511, 3136, 3182, 3190 |
| MluI | ACGCGT | 1 cut(s) | 610 |
| MlyI | GAGTC | 3 cut(s) | 59, 812, 2846 |
| MmeI | TCCRAC | 4 cut(s) | 329, 1232, 1537, 1846 |
| MroNI | GCCGGC | 1 cut(s) | 834 |
| MroXI | GAANNNNTTC | 2 cut(s) | 902, 1500 |
| MslI | CAYNNNNRTG | 3 cut(s) | 735, 2937, 3141 |
| MspA1I | CMGCKG | 2 cut(s) | 71, 2432 |
| MspI | CCGG | 5 cut(s) | 108, 835, 2114, 2456, 3191 |
| MssI | GTTTAAAC | 1 cut(s) | 2527 |
| MunI | CAATTG | 3 cut(s) | 1918, 2424, 2811 |
| MvaI | CCWGG | 8 cut(s) | 420, 654, 1052, 1137, 1436, 2335, 2403, 2838 |
| MvnI | CGCG | 1 cut(s) | 612 |
| NaeI | GCCGGC | 1 cut(s) | 836 |
| NciI | CCSGG | 2 cut(s) | 2115, 3192 |
| NcoI | CCATGG | 1 cut(s) | 1587 |
| NdeI | CATATG | 1 cut(s) | 3010 |
| NgoMIV | GCCGGC | 1 cut(s) | 834 |
| NlaIV | GGNNCC | 8 cut(s) | 58, 106, 115, 641, 2541, 2721, 3096, 3195 |
| NmeAIII | GCCGAG | 1 cut(s) | 407 |
| NmuCI | GTSAC | 6 cut(s) | 760, 1666, 1997, 2386, 2740, 2864 |
| NsbI | TGCGCA | 1 cut(s) | 1403 |
| NspI | RCATGY | 1 cut(s) | 2240 |
| PaeR7I | CTCGAG | 1 cut(s) | 3183 |
| PagI | TCATGA | 1 cut(s) | 1504 |
| PceI | AGGCCT | 2 cut(s) | 2705, 3214 |
| PciI | ACATGT | 1 cut(s) | 2236 |
| PciSI | GCTCTTC | 1 cut(s) | 854 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3181 |
| PdiI | GCCGGC | 1 cut(s) | 836 |
| PdmI | GAANNNNTTC | 2 cut(s) | 902, 1500 |
| PfeI | GAWTC | 7 cut(s) | 25, 486, 1300, 1331, 1777, 2110, 2411 |
| PflFI | GACNNNGTC | 1 cut(s) | 2557 |
| PleI | GAGTC | 3 cut(s) | 58, 812, 2846 |
| PmeI | GTTTAAAC | 1 cut(s) | 2527 |
| PpsI | GAGTC | 3 cut(s) | 58, 812, 2846 |
| Ppu21I | YACGTR | 1 cut(s) | 1364 |
| PpuMI | RGGWCCY | 1 cut(s) | 410 |
| PscI | ACATGT | 1 cut(s) | 2236 |
| Psp124BI | GAGCTC | 2 cut(s) | 211, 2511 |
| Psp1406I | AACGTT | 1 cut(s) | 2271 |
| Psp5II | RGGWCCY | 1 cut(s) | 410 |
| Psp6I | CCWGG | 8 cut(s) | 418, 652, 1050, 1135, 1434, 2333, 2401, 2836 |
| PspEI | GGTNACC | 3 cut(s) | 161, 233, 1666 |
| PspFI | CCCAGC | 3 cut(s) | 60, 1290, 2926 |
| PspGI | CCWGG | 8 cut(s) | 418, 652, 1050, 1135, 1434, 2333, 2401, 2836 |
| PspN4I | GGNNCC | 8 cut(s) | 58, 106, 115, 641, 2541, 2721, 3096, 3195 |
| PspPI | GGNCC | 9 cut(s) | 329, 362, 410, 425, 878, 949, 1057, 2656, 3194 |
| PspPPI | RGGWCCY | 1 cut(s) | 410 |
| PspXI | VCTCGAGB | 1 cut(s) | 3183 |
| PstI | CTGCAG | 1 cut(s) | 2897 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1297 |
| PsuI | RGATCY | 8 cut(s) | 131, 251, 724, 1738, 1923, 2187, 2200, 2539 |
| PsyI | GACNNNGTC | 1 cut(s) | 2557 |
| PvuII | CAGCTG | 1 cut(s) | 2432 |
| RseI | CAYNNNNRTG | 3 cut(s) | 735, 2937, 3141 |
| SacI | GAGCTC | 2 cut(s) | 211, 2511 |
| SapI | GCTCTTC | 1 cut(s) | 854 |
| Sau96I | GGNCC | 9 cut(s) | 329, 362, 410, 425, 878, 949, 1057, 2656, 3194 |
| ScaI | AGTACT | 1 cut(s) | 2316 |
| SchI | GAGTC | 3 cut(s) | 59, 812, 2846 |
| SduI | GDGCHC | 8 cut(s) | 211, 2031, 2053, 2491, 2511, 3136, 3182, 3190 |
| SexAI | ACCWGGT | 1 cut(s) | 2836 |
| SfaNI | GCATC | 7 cut(s) | 1033, 1425, 2086, 2314, 2634, 2680, 2962 |
| SfcI | CTRYAG | 2 cut(s) | 2635, 2893 |
| Sfr274I | CTCGAG | 1 cut(s) | 3183 |
| SinI | GGWCC | 3 cut(s) | 410, 878, 3194 |
| SlaI | CTCGAG | 1 cut(s) | 3183 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 735, 2937, 3141 |
| SmlI | CTYRAG | 5 cut(s) | 1661, 1683, 2445, 2490, 3183 |
| SmoI | CTYRAG | 5 cut(s) | 1661, 1683, 2445, 2490, 3183 |
| SseBI | AGGCCT | 2 cut(s) | 2705, 3214 |
| SspI | AATATT | 1 cut(s) | 1234 |
| SspMI | CTAG | 7 cut(s) | 30, 594, 624, 800, 1101, 2210, 3262 |
| SstI | GAGCTC | 2 cut(s) | 211, 2511 |
| StuI | AGGCCT | 2 cut(s) | 2705, 3214 |
| StyI | CCWWGG | 4 cut(s) | 118, 238, 1587, 2346 |
| TaiI | ACGT | 6 cut(s) | 1366, 1433, 1720, 1950, 2274, 3145 |
| TaqI | TCGA | 5 cut(s) | 896, 1247, 2053, 2086, 3184 |
| TatI | WGTACW | 3 cut(s) | 680, 2314, 3020 |
| TauI | GCSGC | 2 cut(s) | 330, 2925 |
| TfiI | GAWTC | 7 cut(s) | 25, 486, 1300, 1331, 1777, 2110, 2411 |
| TscAI | CASTG | 8 cut(s) | 400, 1877, 1963, 2053, 2225, 2537, 2721, 3231 |
| TseFI | GTSAC | 6 cut(s) | 760, 1666, 1997, 2386, 2740, 2864 |
| TseI | GCWGC | 8 cut(s) | 71, 451, 556, 989, 2429, 2895, 3068, 3203 |
| Tsp45I | GTSAC | 6 cut(s) | 760, 1666, 1997, 2386, 2740, 2864 |
| TspDTI | ATGAA | 9 cut(s) | 507, 1113, 1493, 1496, 1521, 1898, 1995, 2697, 2967 |
| TspGWI | ACGGA | 4 cut(s) | 871, 2213, 2320, 3190 |
| TspRI | CASTG | 8 cut(s) | 400, 1877, 1963, 2053, 2225, 2537, 2721, 3231 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2557 |
| VpaK11BI | GGWCC | 3 cut(s) | 410, 878, 3194 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 372, 2400 |
| XapI | RAATTY | 3 cut(s) | 983, 1933, 2907 |
| XceI | RCATGY | 1 cut(s) | 2240 |
| XhoI | CTCGAG | 1 cut(s) | 3183 |
| XmiI | GTMKAC | 1 cut(s) | 869 |
| XmnI | GAANNNNTTC | 2 cut(s) | 902, 1500 |
| XspI | CTAG | 7 cut(s) | 30, 594, 624, 800, 1101, 2210, 3262 |
| ZrmI | AGTACT | 1 cut(s) | 2316 |