Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004101.1

Orthogroup ID

OG0001438

Physical Location & Seq

Genomic Coordinates Forward (+)

231811 .. 233348

Gene Structure 1538 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004101.1_g000049.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgctggttgtagtatacttctgggaggggtatgctaggcgccccgtcctacgcatcgccgccgacgtggccaagaacctcgatcgcgccctcacccttgtccgcaagtgcaagcacagcgacgtcctccaccaggccttctccatcaccaccatcgccgacttctgcatggtgtccaacctcctcgagtcctccatcgctggcatgaagtggctcctctcagtcttcgagtctaatggcaccaacctctccctgtcgcccatcgccagcaacgtccctattctgagctgggtctggtcctacatcgccactgcaggagatagcttaatcaccagcctggaaagtgtggccgcctctaaccgcactaaaaagcttgaagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008285 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

127

Amino Acids

13.98

Weight (kDa)

8.66

Isoelectric Point (pI)

30.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26600 AT3G26600
fragaria_vesca	FvH4_4g25480 FvH4_5g06080
malus_domestica	MD06G1167100.v1.1 MD13G1102400.v1.1 MD14G1172700.v1.1 MD16G1102800.v1.1
prunus_persica	Prupe.1G089500_v2.0.a1 Prupe.1G243400_v2.0.a1 Prupe.5G166900_v2.0.a1
pyrus_communis	pycom06g14970 pycom06g14980 pycom13g08950 pycom14g14410 pycom16g08740
rosa_chinensis	RchiOBHm_Chr4g0423211 RchiOBHm_Chr4g0432811 RchiOBHm_Chr7g0192761 RchiOBHm_Chr7g0218041
rosa_laevigata	RLG00000004331 RLG00000006810
rosa_multiflora	Rmu_co8276235.1_g000001 Rmu_sc0001516.1_g000053 Rmu_sc0004101.1_g000049 Rmu_sc0005234.1_g000003 Rmu_sc0008148.1_g000037
rosa_roxburghii	Rroxscaffold_2G00090530 Rroxscaffold_3G00262710 Rroxscaffold_5G00374250 Rroxscaffold_7G00212840
rosa_rugosa	Rorug04G0263100 Rorug07G0004500
rosa_samantha	Rh1AG125500 Rh2AG461900 Rh2CG448900 Rh4AG317200 Rh4AG322300 Rh4BG325400 Rh4CG340300 Rh4DG320600 Rh4DG326400 Rh5BG349900 Rh5CG383400 Rh7AG129500 Rh7AG315400 Rh7BG130800 Rh7CG061100 Rh7CG134200 Rh7DG131700
rosa_wichuraiana	Rw4G027590 Rw7G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	126
AccB1I	GGYRCC	2 cut(s)	39, 239
AccI	GTMKAC	1 cut(s)	15
AccII	CGCG	1 cut(s)	87
AciI	CCGC	4 cut(s)	60, 103, 351, 361
AcoI	YGGCCR	2 cut(s)	69, 348
AcyI	GRCGYC	2 cut(s)	40, 123
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	1 cut(s)	377
AjiI	CACGTC	1 cut(s)	67
AjnI	CCWGG	2 cut(s)	132, 336
AluBI	AGCT	4 cut(s)	288, 324, 373, 380
AluI	AGCT	4 cut(s)	288, 324, 373, 380
Ama87I	CYCGRG	1 cut(s)	185
AoxI	GGCC	3 cut(s)	69, 135, 348
AspLEI	GCGC	2 cut(s)	42, 89
AspS9I	GGNCC	1 cut(s)	297
AsuHPI	GGTGA	3 cut(s)	85, 139, 322
AvaI	CYCGRG	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	297
BalI	TGGCCA	1 cut(s)	71
BanI	GGYRCC	2 cut(s)	39, 239
BbsI	GAAGAC	1 cut(s)	217
BccI	CCATC	4 cut(s)	152, 161, 203, 269
BciT130I	CCWGG	2 cut(s)	134, 338
BfaI	CTAG	1 cut(s)	36
BfmI	CTRYAG	1 cut(s)	312
BfoI	RGCGCY	1 cut(s)	43
BglI	GCCNNNNNGGC	1 cut(s)	68
BisI	GCNGC	2 cut(s)	60, 351
BlsI	GCNGC	2 cut(s)	61, 352
Bme1390I	CCNGG	2 cut(s)	134, 338
Bme18I	GGWCC	1 cut(s)	297
BmeT110I	CYCGRG	1 cut(s)	185
BmgBI	CACGTC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	297
BmiI	GGNNCC	3 cut(s)	41, 215, 241
BmrFI	CCNGG	2 cut(s)	134, 338
BmsI	GCATC	1 cut(s)	63
BpiI	GAAGAC	1 cut(s)	217
BsaHI	GRCGYC	2 cut(s)	40, 123
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
BseBI	CCWGG	2 cut(s)	134, 338
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	2 cut(s)	234, 275
BseRI	GAGGAG	2 cut(s)	173, 206
BseYI	CCCAGC	1 cut(s)	288
Bsh1236I	CGCG	1 cut(s)	87
Bsh1285I	CGRYCG	1 cut(s)	85
BshFI	GGCC	3 cut(s)	71, 137, 350
BshNI	GGYRCC	2 cut(s)	39, 239
BsiEI	CGRYCG	1 cut(s)	85
BsiHKCI	CYCGRG	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	260
BsnI	GGCC	3 cut(s)	71, 137, 350
BsoBI	CYCGRG	1 cut(s)	185
Bsp143I	GATC	1 cut(s)	82
BspACI	CCGC	4 cut(s)	60, 103, 351, 361
BspANI	GGCC	3 cut(s)	71, 137, 350
BspCNI	CTCAG	2 cut(s)	233, 276
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	3 cut(s)	41, 215, 241
BspMAI	CTGCAG	1 cut(s)	316
BspT107I	GGYRCC	2 cut(s)	39, 239
BssMI	GATC	1 cut(s)	82
BssNAI	GTATAC	1 cut(s)	16
BssNI	GRCGYC	2 cut(s)	40, 123
Bst1107I	GTATAC	1 cut(s)	16
Bst2UI	CCWGG	2 cut(s)	134, 338
BstACI	GRCGYC	2 cut(s)	40, 123
BstC8I	GCNNGC	3 cut(s)	113, 202, 268
BstDEI	CTNAG	2 cut(s)	220, 284
BstENI	CCTNNNNNAGG	1 cut(s)	131
BstFNI	CGCG	1 cut(s)	87
BstH2I	RGCGCY	1 cut(s)	43
BstHHI	GCGC	2 cut(s)	42, 89
BstKTI	GATC	1 cut(s)	85
BstMBI	GATC	1 cut(s)	82
BstMCI	CGRYCG	1 cut(s)	85
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 117
BstNI	CCWGG	2 cut(s)	134, 338
BstSCI	CCNGG	2 cut(s)	132, 336
BstSFI	CTRYAG	1 cut(s)	312
BstUI	CGCG	1 cut(s)	87
BstV2I	GAAGAC	1 cut(s)	217
BstZ17I	GTATAC	1 cut(s)	16
BsuRI	GGCC	3 cut(s)	71, 137, 350
BtgZI	GCGATG	5 cut(s)	40, 139, 181, 247, 289
BtrI	CACGTC	1 cut(s)	67
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	3 cut(s)	113, 202, 268
CfoI	GCGC	2 cut(s)	42, 89
Cfr13I	GGNCC	1 cut(s)	297
CviAII	CATG	2 cut(s)	169, 205
CviJI	RGCY	9 cut(s)	71, 137, 214, 288, 324, 336, 350, 373, 380
CviKI_1	RGCY	9 cut(s)	71, 137, 214, 288, 324, 336, 350, 373, 380
DdeI	CTNAG	2 cut(s)	220, 284
DinI	GGCGCC	1 cut(s)	41
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
EaeI	YGGCCR	2 cut(s)	69, 348
Eco147I	AGGCCT	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	297
Eco88I	CYCGRG	1 cut(s)	185
EcoNI	CCTNNNNNAGG	1 cut(s)	131
EcoRII	CCWGG	2 cut(s)	132, 336
EgeI	GGCGCC	1 cut(s)	41
EheI	GGCGCC	1 cut(s)	41
FaeI	CATG	2 cut(s)	172, 208
FaiI	YATR	4 cut(s)	16, 33, 170, 206
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	2 cut(s)	168, 204
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	2 cut(s)	60, 351
Fsp4HI	GCNGC	2 cut(s)	60, 351
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	2 cut(s)	41, 88
GluI	GCNGC	2 cut(s)	60, 351
GsaI	CCCAGC	1 cut(s)	292
HaeII	RGCGCY	1 cut(s)	43
HaeIII	GGCC	3 cut(s)	71, 137, 350
HhaI	GCGC	2 cut(s)	42, 89
Hin1I	GRCGYC	2 cut(s)	40, 123
Hin1II	CATG	2 cut(s)	172, 208
Hin6I	GCGC	2 cut(s)	40, 87
HinP1I	GCGC	2 cut(s)	40, 87
HindIII	AAGCTT	2 cut(s)	371, 378
HinfI	GANTC	2 cut(s)	188, 230
HphI	GGTGA	3 cut(s)	85, 139, 322
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	1 cut(s)	285
Hpy8I	GTNNAC	1 cut(s)	16
Hpy99I	CGWCG	2 cut(s)	68, 125
HpyAV	CCTTC	1 cut(s)	148
HpyCH4IV	ACGT	3 cut(s)	66, 123, 273
HpyCH4V	TGCA	3 cut(s)	111, 168, 314
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 117
HpyF3I	CTNAG	2 cut(s)	220, 284
HpySE526I	ACGT	3 cut(s)	66, 123, 273
Hsp92I	GRCGYC	2 cut(s)	40, 123
Hsp92II	CATG	2 cut(s)	172, 208
HspAI	GCGC	2 cut(s)	40, 87
KasI	GGCGCC	1 cut(s)	39
Kzo9I	GATC	1 cut(s)	82
LmnI	GCTCC	1 cut(s)	219
LweI	GCATC	1 cut(s)	63
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	3 cut(s)	66, 123, 273
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MboII	GAAGA	1 cut(s)	217
MlsI	TGGCCA	1 cut(s)	71
MluNI	TGGCCA	1 cut(s)	71
Mly113I	GGCGCC	1 cut(s)	40
MlyI	GAGTC	2 cut(s)	197, 239
MmeI	TCCRAC	1 cut(s)	201
Mox20I	TGGCCA	1 cut(s)	71
MscI	TGGCCA	1 cut(s)	71
MseI	TTAA	1 cut(s)	326
Msp20I	TGGCCA	1 cut(s)	71
MspR9I	CCNGG	2 cut(s)	134, 338
MvaI	CCWGG	2 cut(s)	134, 338
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	2 cut(s)	68, 117
NarI	GGCGCC	1 cut(s)	40
NdeII	GATC	1 cut(s)	82
NlaIII	CATG	2 cut(s)	172, 208
NlaIV	GGNNCC	3 cut(s)	41, 215, 241
PaeR7I	CTCGAG	1 cut(s)	185
PceI	AGGCCT	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	2 cut(s)	63, 270
PkrI	GCNGC	2 cut(s)	61, 352
Ple19I	CGATCG	1 cut(s)	85
PleI	GAGTC	2 cut(s)	196, 238
PluTI	GGCGCC	1 cut(s)	43
PpsI	GAGTC	2 cut(s)	196, 238
Psp6I	CCWGG	2 cut(s)	132, 336
PspFI	CCCAGC	1 cut(s)	288
PspGI	CCWGG	2 cut(s)	132, 336
PspN4I	GGNNCC	3 cut(s)	41, 215, 241
PspPI	GGNCC	1 cut(s)	297
PspXI	VCTCGAGB	1 cut(s)	185
PstI	CTGCAG	1 cut(s)	316
PvuI	CGATCG	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	326
SatI	GCNGC	2 cut(s)	60, 351
Sau3AI	GATC	1 cut(s)	82
Sau96I	GGNCC	1 cut(s)	297
SchI	GAGTC	2 cut(s)	197, 239
ScrFI	CCNGG	2 cut(s)	134, 338
SfaNI	GCATC	1 cut(s)	63
SfcI	CTRYAG	1 cut(s)	312
SfoI	GGCGCC	1 cut(s)	41
Sfr274I	CTCGAG	1 cut(s)	185
SinI	GGWCC	1 cut(s)	297
SlaI	CTCGAG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SseBI	AGGCCT	1 cut(s)	137
SsiI	CCGC	4 cut(s)	60, 103, 351, 361
SspDI	GGCGCC	1 cut(s)	39
SspMI	CTAG	1 cut(s)	36
StuI	AGGCCT	1 cut(s)	137
StyD4I	CCNGG	2 cut(s)	132, 336
TaiI	ACGT	3 cut(s)	69, 126, 276
TaqI	TCGA	3 cut(s)	81, 186, 228
TauI	GCSGC	2 cut(s)	62, 353
Tru1I	TTAA	1 cut(s)	326
Tru9I	TTAA	1 cut(s)	326
TscAI	CASTG	1 cut(s)	316
TspDTI	ATGAA	1 cut(s)	221
TspRI	CASTG	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	297
XagI	CCTNNNNNAGG	1 cut(s)	131
XhoI	CTCGAG	1 cut(s)	185
XmiI	GTMKAC	1 cut(s)	15
XspI	CTAG	1 cut(s)	36
ZraI	GACGTC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.