Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001438

Physical Location & Seq

Genomic Coordinates Forward (+)

23352032 .. 23352328

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG125500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCTCCGAGTTGCCGTCCGGATCGCTGCTGCCTCCCTTTCCCTTTACGAGCGCCCCGTCCGATGCATCGCCGCCGACGTGGCCAAGAACCTCAACCGCAAGTGCAAGCACAGTGGCGTCCTCCACCAGGTCTTCTCCATCACCACCACCACTGACTTCCGCAAGGTGTCCAACCTCCTCAAGTTCTCTATCGGCGACATGAAATGGCTCCTCTCTGTCTTCGAGTGCGGCAGCGCCAACCTCACATCAAAACCTGCTTCAGCCTCAGAAGGTTGCATATTCATCGCATATCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008285 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

98

Amino Acids

10.74

Weight (kDa)

9.64

Isoelectric Point (pI)

21.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7792	PF25055	1 - 74	4.7e-24	Domain of unknown function (DUF7792)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26600 AT3G26600
fragaria_vesca	FvH4_4g25480 FvH4_5g06080
malus_domestica	MD06G1167100.v1.1 MD13G1102400.v1.1 MD14G1172700.v1.1 MD16G1102800.v1.1
prunus_persica	Prupe.1G089500_v2.0.a1 Prupe.1G243400_v2.0.a1 Prupe.5G166900_v2.0.a1
pyrus_communis	pycom06g14970 pycom06g14980 pycom13g08950 pycom14g14410 pycom16g08740
rosa_chinensis	RchiOBHm_Chr4g0423211 RchiOBHm_Chr4g0432811 RchiOBHm_Chr7g0192761 RchiOBHm_Chr7g0218041
rosa_laevigata	RLG00000004331 RLG00000006810
rosa_multiflora	Rmu_co8276235.1_g000001 Rmu_sc0001516.1_g000053 Rmu_sc0004101.1_g000049 Rmu_sc0005234.1_g000003 Rmu_sc0008148.1_g000037
rosa_roxburghii	Rroxscaffold_2G00090530 Rroxscaffold_3G00262710 Rroxscaffold_5G00374250 Rroxscaffold_7G00212840
rosa_rugosa	Rorug04G0263100 Rorug07G0004500
rosa_samantha	Rh1AG125500 Rh2AG461900 Rh2CG448900 Rh4AG317200 Rh4AG322300 Rh4BG325400 Rh4CG340300 Rh4DG320600 Rh4DG326400 Rh5BG349900 Rh5CG383400 Rh7AG129500 Rh7AG315400 Rh7BG130800 Rh7CG061100 Rh7CG134200 Rh7DG131700
rosa_wichuraiana	Rw4G027590 Rw7G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	262
AccIII	TCCGGA	1 cut(s)	18
AciI	CCGC	4 cut(s)	72, 97, 160, 228
AclWI	GGATC	1 cut(s)	29
AcoI	YGGCCR	1 cut(s)	81
AcuI	CTGAAG	1 cut(s)	243
AcyI	GRCGYC	1 cut(s)	117
AfiI	CCNNNNNNNGG	1 cut(s)	127
AjiI	CACGTC	1 cut(s)	79
AjnI	CCWGG	1 cut(s)	126
AlwI	GGATC	1 cut(s)	29
Aor13HI	TCCGGA	1 cut(s)	18
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	3 cut(s)	26, 29, 231
AspLEI	GCGC	2 cut(s)	54, 236
AsuHPI	GGTGA	1 cut(s)	133
BalI	TGGCCA	1 cut(s)	83
BbsI	GAAGAC	2 cut(s)	124, 211
BbvI	GCAGC	3 cut(s)	13, 16, 243
BccI	CCATC	1 cut(s)	146
BcgI	CGANNNNNNTGC	1 cut(s)	265
BciT130I	CCWGG	1 cut(s)	128
BfoI	RGCGCY	2 cut(s)	55, 237
BfuAI	ACCTGC	1 cut(s)	262
BglI	GCCNNNNNGGC	1 cut(s)	80
BisI	GCNGC	5 cut(s)	27, 30, 72, 229, 232
BlsI	GCNGC	5 cut(s)	28, 31, 73, 230, 233
Bme1390I	CCNGG	1 cut(s)	128
BmgBI	CACGTC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	209
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	2 cut(s)	53, 75
BpiI	GAAGAC	2 cut(s)	124, 211
BpuEI	CTTGAG	1 cut(s)	164
BsaHI	GRCGYC	1 cut(s)	117
BsaWI	WCCGGW	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
BseAI	TCCGGA	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	128
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	279
BseRI	GAGGAG	2 cut(s)	167, 200
BseXI	GCAGC	3 cut(s)	13, 16, 243
BshFI	GGCC	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	19
BslI	CCNNNNNNNGG	1 cut(s)	127
BsnI	GGCC	1 cut(s)	83
Bsp13I	TCCGGA	1 cut(s)	18
Bsp143I	GATC	1 cut(s)	21
BspACI	CCGC	4 cut(s)	72, 97, 160, 228
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	1 cut(s)	278
BspEI	TCCGGA	1 cut(s)	18
BspLI	GGNNCC	1 cut(s)	209
BspMI	ACCTGC	1 cut(s)	262
BspPI	GGATC	1 cut(s)	29
BssMI	GATC	1 cut(s)	21
BssNI	GRCGYC	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	1 cut(s)	113
BstACI	GRCGYC	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	1 cut(s)	265
BstENI	CCTNNNNNAGG	1 cut(s)	125
BstH2I	RGCGCY	2 cut(s)	55, 237
BstHHI	GCGC	2 cut(s)	54, 236
BstKTI	GATC	1 cut(s)	24
BstMBI	GATC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BstV1I	GCAGC	3 cut(s)	13, 16, 243
BstV2I	GAAGAC	2 cut(s)	124, 211
BsuRI	GGCC	1 cut(s)	83
BtgZI	GCGATG	2 cut(s)	52, 268
BtrI	CACGTC	1 cut(s)	79
BtsIMutI	CAGTG	2 cut(s)	118, 150
BveI	ACCTGC	1 cut(s)	262
Cac8I	GCNNGC	1 cut(s)	107
CfoI	GCGC	2 cut(s)	54, 236
CseI	GACGC	1 cut(s)	106
CsiI	ACCWGGT	1 cut(s)	126
CspCI	CAANNNNNGTGG	2 cut(s)	94, 129
CviAII	CATG	1 cut(s)	199
CviJI	RGCY	3 cut(s)	83, 208, 263
CviKI_1	RGCY	3 cut(s)	83, 208, 263
DdeI	CTNAG	1 cut(s)	265
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
EaeI	YGGCCR	1 cut(s)	81
Eco57I	CTGAAG	1 cut(s)	243
EcoNI	CCTNNNNNAGG	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	126
EcoT22I	ATGCAT	1 cut(s)	68
FaeI	CATG	1 cut(s)	202
FaiI	YATR	3 cut(s)	200, 278, 289
FatI	CATG	1 cut(s)	198
Fnu4HI	GCNGC	5 cut(s)	27, 30, 72, 229, 232
Fsp4HI	GCNGC	5 cut(s)	27, 30, 72, 229, 232
GlaI	GCGC	2 cut(s)	53, 235
GluI	GCNGC	5 cut(s)	27, 30, 72, 229, 232
HaeII	RGCGCY	2 cut(s)	55, 237
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	1 cut(s)	19
HgaI	GACGC	1 cut(s)	106
HhaI	GCGC	2 cut(s)	54, 236
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	1 cut(s)	202
Hin6I	GCGC	2 cut(s)	52, 234
HinP1I	GCGC	2 cut(s)	52, 234
HpaII	CCGG	1 cut(s)	19
HphI	GGTGA	1 cut(s)	133
Hpy188I	TCNGA	3 cut(s)	8, 62, 268
Hpy188III	TCNNGA	1 cut(s)	19
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	1 cut(s)	263
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	3 cut(s)	66, 105, 276
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	265
HpySE526I	ACGT	1 cut(s)	78
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	202
HspAI	GCGC	2 cut(s)	52, 234
Kpn2I	TCCGGA	1 cut(s)	18
Kzo9I	GATC	1 cut(s)	21
LmnI	GCTCC	2 cut(s)	9, 213
LpnPI	CCDG	4 cut(s)	32, 113, 140, 267
Lsp1109I	GCAGC	3 cut(s)	13, 16, 243
LweI	GCATC	2 cut(s)	53, 75
MabI	ACCWGGT	1 cut(s)	126
MaeII	ACGT	1 cut(s)	78
MalI	GATC	1 cut(s)	23
MboI	GATC	1 cut(s)	21
MboII	GAAGA	2 cut(s)	124, 211
MlsI	TGGCCA	1 cut(s)	83
MluNI	TGGCCA	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	8 cut(s)	43, 101, 131, 185, 188, 221, 251, 274
Mox20I	TGGCCA	1 cut(s)	83
Mph1103I	ATGCAT	1 cut(s)	68
MroI	TCCGGA	1 cut(s)	18
MscI	TGGCCA	1 cut(s)	83
Msp20I	TGGCCA	1 cut(s)	83
MspI	CCGG	1 cut(s)	19
MspR9I	CCNGG	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	1 cut(s)	21
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	1 cut(s)	209
NsiI	ATGCAT	1 cut(s)	68
PcsI	WCGNNNNNNNCGW	2 cut(s)	54, 75
PkrI	GCNGC	5 cut(s)	28, 31, 73, 230, 233
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	209
SatI	GCNGC	5 cut(s)	27, 30, 72, 229, 232
Sau3AI	GATC	1 cut(s)	21
ScrFI	CCNGG	1 cut(s)	128
SetI	ASST	8 cut(s)	81, 93, 132, 168, 177, 243, 256, 274
SexAI	ACCWGGT	1 cut(s)	126
SfaNI	GCATC	2 cut(s)	53, 75
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
SsiI	CCGC	4 cut(s)	72, 97, 160, 228
StyD4I	CCNGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	113
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	1 cut(s)	222
TauI	GCSGC	2 cut(s)	74, 231
TscAI	CASTG	2 cut(s)	118, 157
TseI	GCWGC	3 cut(s)	26, 29, 231
TspDTI	ATGAA	2 cut(s)	215, 271
TspRI	CASTG	2 cut(s)	118, 157
XagI	CCTNNNNNAGG	1 cut(s)	125
Zsp2I	ATGCAT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.