Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001438

Physical Location & Seq

Genomic Coordinates Reverse (-)

56703404 .. 56706154

Gene Structure 2751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00262710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1764 bp

ATGGCCGCCGCAGCCGCACCCGCCGAAAATGACGAAAAGACCCTCCAAGAGGAGCTGTCCCTCCCCATCCTCCTCGCGGATCGGGTCCTCAAGTCGGCCCACGAGGCCGAGTCCTCCAAGCTCGAGTGCGCCGACCTGGCCCACCAAGTCGACCGCCTCTCCCAGATGCTCCGATCCGCCGTCCGCATCGCCGCCGCCTCCCCCTCCCTCTACGAGCGCCCGGTCCGACGGATCGCCGCCGACGTCTCCAAGAACCTGGACCGCGCCCTCACCCTCGTCCGCAAGTGCAAGCACAGCGGCGTCCTCCGCCAGGTCTTCTCCATCACCACCACCGCCGACTTCCGCAAGGTGTCCAACCTCCTCGAGTCCTCCATCGGCGACATGAAGTGGCTCCTCTCGGTCTTCGAGTCCGACGGCGCCAACCTCTCCCTGCCGCCCATCGCCAGCAACGACCCGATTCTGAGCTGGGTCTGGTCCTACATCGCGACCATTCAGATGGGTCAGCTCCGGGACCGAGTCGAGGCGGCGAGCTCACTCGTCTCGCTGGCGAGGGACAACGACCGGAACAAGCAGATAATTGTTGACGAGGGAGGAGTGACGCCGCTGCTCAAGCTTTTGAAAGAGGGGTCTTCGGCGGAGGCACAGATTGCTGCGGCGAATGCTCTGTTTCATATCGCTACGGACCAGGAGAGGGTTCGGACTGTGATCGAGTTGAATGGGATTCCGACGATAGTTTCGGTTTTGGGGGATTCGCCGATGAGGGTTCAGGCGGCGGTGGTGAGATTGGTGGCGGAAATGGCGGAGCTGGACCCGATTGCGCAGGAGGACTTTGCTAGAGAAAATGTGACTAGGCCGTTGGTGTCTCTGTTGGCTATGGATACGGTTCTGGATGAGCCGAAAGCGCAGTCGGGTAAGCCCAGCATTCATTCGCTTGTGATTAATAAGGAGTTGGTAGGAAAGGGGGCGAATTCGAGTAGTAGGTTGGGGTCGTTTAGTTCGAATCATTATCATTCTGATGGGAGTAGTAGAGGTGGGCATTATAGGAAAGATAGGGAGAGAGAGGTTGAGAGCCCTGAGGTGAAGCTCAAGCTCAAGGTTGGTTGTGCTGAGGCATTGTGGAAGTTGTGTGGAGATTGTTTGTCGAATAGTCGAAAAGTTACAGAGACTAAAGGGTTGATTTGTTTGGCGAAGATTGTTGAGAAGGAAGTTGGGGAATTGCAGCTTAATTGCTTGATGACTCTGATGGAAATAGCTGCAGTGGCAGAGTCAAATCCAGAGCTTAGACGATCGGCTTTTAAGCCCAACTCTCCGGCTGCAAAGGCAGTTGTCGATCAGCTTATGAGGGTTATTCAAGAAGAGAGTAACCCGGATCTGCAAATGCCGGCAGTCAAGGCAATTGGGTCACTCGCAAGAACTTTTGCTGCCAGGGAAACCCGGATAGTTGGTCCTTTGGTTGCGCGGCTGGGTAATGAGAATGTGGATGTGGCAACGGAGGCTGCCATTGCATTGGGAAAGTTTGTGTGTTTGGAGAACTTCAACCGAGTAGAGCATTCCAAGACGATAATTGAGTTCGATGGGGTTCCCTCTCTGATGAGATTGTTGAAGGCTACTGATCGGACCAACGAACTTGCTCACATGCACTGCCTAGAACTATTATGTTACCTCGCATTGCACGTAGGCAATAGCAAAGCTCTCGAACAAGCACAGGTGTTGAGTACTCTCGAGGGGGAGCTCGTTCTGCTGTGGCACAAAATCCAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008285 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

587

Amino Acids

64.11

Weight (kDa)

6.17

Isoelectric Point (pI)

37.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7792	PF25055	16 - 135	1.2e-50	Domain of unknown function (DUF7792)
Arm	PF00514	186 - 226	5.3e-06	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26600 AT3G26600
fragaria_vesca	FvH4_4g25480 FvH4_5g06080
malus_domestica	MD06G1167100.v1.1 MD13G1102400.v1.1 MD14G1172700.v1.1 MD16G1102800.v1.1
prunus_persica	Prupe.1G089500_v2.0.a1 Prupe.1G243400_v2.0.a1 Prupe.5G166900_v2.0.a1
pyrus_communis	pycom06g14970 pycom06g14980 pycom13g08950 pycom14g14410 pycom16g08740
rosa_chinensis	RchiOBHm_Chr4g0423211 RchiOBHm_Chr4g0432811 RchiOBHm_Chr7g0192761 RchiOBHm_Chr7g0218041
rosa_laevigata	RLG00000004331 RLG00000006810
rosa_multiflora	Rmu_co8276235.1_g000001 Rmu_sc0001516.1_g000053 Rmu_sc0004101.1_g000049 Rmu_sc0005234.1_g000003 Rmu_sc0008148.1_g000037
rosa_roxburghii	Rroxscaffold_2G00090530 Rroxscaffold_3G00262710 Rroxscaffold_5G00374250 Rroxscaffold_7G00212840
rosa_rugosa	Rorug04G0263100 Rorug07G0004500
rosa_samantha	Rh1AG125500 Rh2AG461900 Rh2CG448900 Rh4AG317200 Rh4AG322300 Rh4BG325400 Rh4CG340300 Rh4DG320600 Rh4DG326400 Rh5BG349900 Rh5CG383400 Rh7AG129500 Rh7AG315400 Rh7BG130800 Rh7CG061100 Rh7CG134200 Rh7DG131700
rosa_wichuraiana	Rw4G027590 Rw7G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	246
Acc16I	TGCGCA	1 cut(s)	819
AccB1I	GGYRCC	1 cut(s)	416
AccI	GTMKAC	1 cut(s)	150
AccII	CGCG	4 cut(s)	77, 264, 485, 1459
AclWI	GGATC	4 cut(s)	87, 168, 239, 1377
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	967
AcyI	GRCGYC	4 cut(s)	243, 300, 417, 599
AfaI	GTAC	1 cut(s)	1717
AfiI	CCNNNNNNNGG	6 cut(s)	49, 76, 94, 310, 520, 691
AgsI	TTSAA	5 cut(s)	619, 715, 1352, 1537, 1603
AjnI	CCWGG	5 cut(s)	135, 255, 309, 684, 1424
Alw21I	GWGCWC	2 cut(s)	533, 1734
Alw26I	GTCTC	4 cut(s)	250, 544, 867, 1157
AlwI	GGATC	4 cut(s)	87, 168, 239, 1377
Ama87I	CYCGRG	3 cut(s)	122, 362, 1721
AoxI	GGCC	5 cut(s)	3, 96, 105, 138, 851
ApeKI	GCWGC	8 cut(s)	11, 604, 650, 1219, 1253, 1313, 1421, 1496
ApoI	RAATTY	1 cut(s)	967
ArsI	GACNNNNNNTTYG	4 cut(s)	718, 750, 890, 922
AseI	ATTAAT	1 cut(s)	939
AspLEI	GCGC	7 cut(s)	131, 219, 266, 419, 820, 904, 1459
AsuC2I	CCSGG	4 cut(s)	221, 509, 1367, 1435
AsuHPI	GGTGA	4 cut(s)	262, 316, 790, 1090
AsuII	TTCGAA	1 cut(s)	998
AvaI	CYCGRG	3 cut(s)	122, 362, 1721
AvaII	GGWCC	9 cut(s)	85, 223, 259, 474, 511, 682, 808, 1445, 1617
AxyI	CCTNAGG	1 cut(s)	1074
BanI	GGYRCC	1 cut(s)	416
BanII	GRGCYC	3 cut(s)	533, 1073, 1734
BauI	CACGAG	1 cut(s)	101
BbsI	GAAGAC	3 cut(s)	307, 394, 621
Bbv12I	GWGCWC	2 cut(s)	533, 1734
BbvCI	CCTCAGC	1 cut(s)	1107
BbvI	GCAGC	8 cut(s)	23, 591, 637, 1231, 1240, 1300, 1408, 1483
BccI	CCATC	8 cut(s)	74, 329, 380, 446, 490, 1010, 1237, 1568
BceAI	ACGGC	3 cut(s)	164, 430, 838
BcgI	CGANNNNNNTGC	2 cut(s)	1675, 1709
BciT130I	CCWGG	5 cut(s)	137, 257, 311, 686, 1426
BciVI	GTATCC	1 cut(s)	871
BcnI	CCSGG	4 cut(s)	221, 509, 1367, 1435
BcoDI	GTCTC	4 cut(s)	250, 544, 867, 1157
BfaI	CTAG	3 cut(s)	834, 849, 1646
BfmI	CTRYAG	1 cut(s)	1254
BfoI	RGCGCY	2 cut(s)	220, 420
BfuI	GTATCC	1 cut(s)	871
BglI	GCCNNNNNGGC	2 cut(s)	104, 137
BmcAI	AGTACT	1 cut(s)	1717
Bme1390I	CCNGG	9 cut(s)	137, 221, 257, 311, 509, 686, 1367, 1426, 1435
Bme18I	GGWCC	9 cut(s)	85, 223, 259, 474, 511, 682, 808, 1445, 1617
BmeT110I	CYCGRG	3 cut(s)	122, 362, 1721
BmiI	GGNNCC	6 cut(s)	86, 392, 418, 512, 810, 1581
BmrFI	CCNGG	9 cut(s)	137, 221, 257, 311, 509, 686, 1367, 1426, 1435
BmsI	GCATC	2 cut(s)	156, 195
BpiI	GAAGAC	3 cut(s)	307, 394, 621
Bpu10I	CCTNAGC	1 cut(s)	1107
Bpu14I	TTCGAA	1 cut(s)	998
BpuEI	CTTGAG	4 cut(s)	74, 593, 1070, 1076
BpuMI	CCSGG	4 cut(s)	221, 509, 1367, 1435
BsaAI	YACGTR	1 cut(s)	1675
BsaHI	GRCGYC	4 cut(s)	243, 300, 417, 599
BsaJI	CCNNGG	1 cut(s)	1425
BsaWI	WCCGGW	1 cut(s)	561
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	6 cut(s)	49, 76, 94, 310, 520, 691
Bse118I	RCCGGY	1 cut(s)	1381
Bse21I	CCTNAGG	1 cut(s)	1074
Bse3DI	GCAATG	2 cut(s)	1500, 1667
BseBI	CCWGG	5 cut(s)	137, 257, 311, 686, 1426
BseDI	CCNNGG	1 cut(s)	1425
BseGI	GGATG	3 cut(s)	66, 895, 1486
BseLI	CCNNNNNNNGG	6 cut(s)	49, 76, 94, 310, 520, 691
BseMI	GCAATG	2 cut(s)	1500, 1667
BseMII	CTCAG	3 cut(s)	452, 1065, 1098
BseRI	GAGGAG	5 cut(s)	62, 65, 350, 383, 606
BseXI	GCAGC	8 cut(s)	23, 591, 637, 1231, 1240, 1300, 1408, 1483
BseYI	CCCAGC	3 cut(s)	465, 917, 1462
Bsh1236I	CGCG	4 cut(s)	77, 264, 485, 1459
Bsh1285I	CGRYCG	3 cut(s)	154, 562, 1289
BshFI	GGCC	5 cut(s)	5, 98, 107, 140, 853
BshNI	GGYRCC	1 cut(s)	416
BsiEI	CGRYCG	3 cut(s)	154, 562, 1289
BsiHKAI	GWGCWC	2 cut(s)	533, 1734
BsiHKCI	CYCGRG	3 cut(s)	122, 362, 1721
BsiSI	CCGG	7 cut(s)	221, 508, 562, 1310, 1367, 1382, 1435
BslFI	GGGAC	3 cut(s)	43, 524, 566
BslI	CCNNNNNNNGG	6 cut(s)	49, 76, 94, 310, 520, 691
BsmAI	GTCTC	4 cut(s)	250, 544, 867, 1157
BsmBI	CGTCTC	2 cut(s)	250, 544
BsmFI	GGGAC	3 cut(s)	43, 524, 566
BsmI	GAATGC	3 cut(s)	664, 921, 1549
BsnI	GGCC	5 cut(s)	5, 98, 107, 140, 853
BsoBI	CYCGRG	3 cut(s)	122, 362, 1721
Bsp119I	TTCGAA	1 cut(s)	998
Bsp1286I	GDGCHC	3 cut(s)	533, 1073, 1734
Bsp143I	GATC	8 cut(s)	79, 173, 231, 705, 1286, 1330, 1369, 1612
Bsp68I	TCGCGA	1 cut(s)	485
BspANI	GGCC	5 cut(s)	5, 98, 107, 140, 853
BspCNI	CTCAG	3 cut(s)	453, 1066, 1099
BspFNI	CGCG	4 cut(s)	77, 264, 485, 1459
BspLI	GGNNCC	6 cut(s)	86, 392, 418, 512, 810, 1581
BspMAI	CTGCAG	1 cut(s)	1258
BspPI	GGATC	4 cut(s)	87, 168, 239, 1377
BspT104I	TTCGAA	1 cut(s)	998
BspT107I	GGYRCC	1 cut(s)	416
BsrDI	GCAATG	2 cut(s)	1500, 1667
BsrFI	RCCGGY	1 cut(s)	1381
BssAI	RCCGGY	1 cut(s)	1381
BssECI	CCNNGG	1 cut(s)	1425
BssMI	GATC	8 cut(s)	79, 173, 231, 705, 1286, 1330, 1369, 1612
BssNI	GRCGYC	4 cut(s)	243, 300, 417, 599
BssSI	CACGAG	1 cut(s)	101
Bst2BI	CACGAG	1 cut(s)	101
Bst2UI	CCWGG	5 cut(s)	137, 257, 311, 686, 1426
Bst4CI	ACNGT	2 cut(s)	703, 883
Bst6I	CTCTTC	1 cut(s)	1350
BstACI	GRCGYC	4 cut(s)	243, 300, 417, 599
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstBAI	YACGTR	1 cut(s)	1675
BstBI	TTCGAA	1 cut(s)	998
BstC8I	GCNNGC	5 cut(s)	290, 445, 529, 546, 1383
BstDEI	CTNAG	4 cut(s)	461, 1074, 1107, 1280
BstENI	CCTNNNNNAGG	2 cut(s)	47, 308
BstF5I	GGATG	3 cut(s)	66, 895, 1486
BstFNI	CGCG	4 cut(s)	77, 264, 485, 1459
BstH2I	RGCGCY	2 cut(s)	220, 420
BstHHI	GCGC	7 cut(s)	131, 219, 266, 419, 820, 904, 1459
BstKTI	GATC	8 cut(s)	82, 176, 234, 708, 1289, 1333, 1372, 1615
BstMAI	GTCTC	4 cut(s)	250, 544, 867, 1157
BstMBI	GATC	8 cut(s)	79, 173, 231, 705, 1286, 1330, 1369, 1612
BstMCI	CGRYCG	3 cut(s)	154, 562, 1289
BstNI	CCWGG	5 cut(s)	137, 257, 311, 686, 1426
BstNSI	RCATGY	1 cut(s)	1639
BstSCI	CCNGG	9 cut(s)	135, 219, 255, 309, 507, 684, 1365, 1424, 1433
BstSFI	CTRYAG	1 cut(s)	1254
BstUI	CGCG	4 cut(s)	77, 264, 485, 1459
BstV1I	GCAGC	8 cut(s)	23, 591, 637, 1231, 1240, 1300, 1408, 1483
BstV2I	GAAGAC	3 cut(s)	307, 394, 621
BstX2I	RGATCY	1 cut(s)	1369
BstXI	CCANNNNNNTGG	3 cut(s)	256, 496, 1507
BstYI	RGATCY	1 cut(s)	1369
Bsu36I	CCTNAGG	1 cut(s)	1074
BsuI	GTATCC	1 cut(s)	871
BsuRI	GGCC	5 cut(s)	5, 98, 107, 140, 853
BtgZI	GCGATG	3 cut(s)	172, 424, 466
BtsCI	GGATG	3 cut(s)	66, 895, 1486
BtsI	GCAGTG	2 cut(s)	1263, 1639
BtsIMutI	CAGTG	2 cut(s)	1263, 1639
BtuMI	TCGCGA	1 cut(s)	485
Cac8I	GCNNGC	5 cut(s)	290, 445, 529, 546, 1383
CfoI	GCGC	7 cut(s)	131, 219, 266, 419, 820, 904, 1459
Cfr10I	RCCGGY	1 cut(s)	1381
CpoI	CGGWCCG	1 cut(s)	223
CseI	GACGC	2 cut(s)	289, 607
Csp6I	GTAC	1 cut(s)	1716
CspI	CGGWCCG	1 cut(s)	223
CviAII	CATG	2 cut(s)	382, 1636
CviQI	GTAC	1 cut(s)	1716
DdeI	CTNAG	4 cut(s)	461, 1074, 1107, 1280
DinI	GGCGCC	1 cut(s)	418
DpnI	GATC	8 cut(s)	81, 175, 233, 707, 1288, 1332, 1371, 1614
DpnII	GATC	8 cut(s)	79, 173, 231, 705, 1286, 1330, 1369, 1612
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	1350
EarI	CTCTTC	1 cut(s)	1350
EciI	GGCGGA	5 cut(s)	166, 296, 650, 806, 815
Ecl136II	GAGCTC	2 cut(s)	531, 1732
Eco24I	GRGCYC	3 cut(s)	533, 1073, 1734
Eco47I	GGWCC	9 cut(s)	85, 223, 259, 474, 511, 682, 808, 1445, 1617
Eco53kI	GAGCTC	2 cut(s)	531, 1732
Eco81I	CCTNAGG	1 cut(s)	1074
Eco88I	CYCGRG	3 cut(s)	122, 362, 1721
EcoICRI	GAGCTC	2 cut(s)	531, 1732
EcoNI	CCTNNNNNAGG	2 cut(s)	47, 308
EcoO109I	RGGNCCY	1 cut(s)	85
EcoRI	GAATTC	1 cut(s)	967
EcoRII	CCWGG	5 cut(s)	135, 255, 309, 684, 1424
EcoT38I	GRGCYC	3 cut(s)	533, 1073, 1734
EgeI	GGCGCC	1 cut(s)	418
EheI	GGCGCC	1 cut(s)	418
Esp3I	CGTCTC	2 cut(s)	250, 544
FaeI	CATG	2 cut(s)	385, 1639
FaiI	YATR	7 cut(s)	383, 672, 875, 1041, 1340, 1637, 1657
FaqI	GGGAC	3 cut(s)	43, 524, 566
FatI	CATG	2 cut(s)	381, 1635
FauI	CCCGC	1 cut(s)	28
FblI	GTMKAC	1 cut(s)	150
FokI	GGATG	3 cut(s)	53, 902, 1493
FriOI	GRGCYC	3 cut(s)	533, 1073, 1734
FspBI	CTAG	3 cut(s)	834, 849, 1646
FspI	TGCGCA	1 cut(s)	819
GlaI	GCGC	7 cut(s)	130, 218, 265, 418, 819, 903, 1458
GsaI	CCCAGC	3 cut(s)	469, 921, 1466
HaeII	RGCGCY	2 cut(s)	220, 420
HaeIII	GGCC	5 cut(s)	5, 98, 107, 140, 853
HapII	CCGG	7 cut(s)	221, 508, 562, 1310, 1367, 1382, 1435
HgaI	GACGC	2 cut(s)	289, 607
HhaI	GCGC	7 cut(s)	131, 219, 266, 419, 820, 904, 1459
Hin1I	GRCGYC	4 cut(s)	243, 300, 417, 599
Hin1II	CATG	2 cut(s)	385, 1639
Hin6I	GCGC	7 cut(s)	129, 217, 264, 417, 818, 902, 1457
HinP1I	GCGC	7 cut(s)	129, 217, 264, 417, 818, 902, 1457
HincII	GTYRAC	2 cut(s)	151, 583
HindII	GTYRAC	2 cut(s)	151, 583
HindIII	AAGCTT	1 cut(s)	611
HpaII	CCGG	7 cut(s)	221, 508, 562, 1310, 1367, 1382, 1435
HphI	GGTGA	4 cut(s)	262, 316, 790, 1090
Hpy166II	GTNNAC	2 cut(s)	151, 583
Hpy188III	TCNNGA	7 cut(s)	484, 887, 1274, 1352, 1694, 1721, 1756
Hpy8I	GTNNAC	2 cut(s)	151, 583
Hpy99I	CGWCG	4 cut(s)	231, 245, 416, 730
HpyAV	CCTTC	2 cut(s)	1195, 1597
HpyCH4III	ACNGT	2 cut(s)	703, 883
HpyCH4IV	ACGT	2 cut(s)	243, 1674
HpyCH4V	TGCA	8 cut(s)	288, 1219, 1256, 1316, 1375, 1505, 1639, 1672
HpyF3I	CTNAG	4 cut(s)	461, 1074, 1107, 1280
HpySE526I	ACGT	2 cut(s)	243, 1674
Hsp92I	GRCGYC	4 cut(s)	243, 300, 417, 599
Hsp92II	CATG	2 cut(s)	385, 1639
HspAI	GCGC	7 cut(s)	129, 217, 264, 417, 818, 902, 1457
KasI	GGCGCC	1 cut(s)	416
KroI	GCCGGC	1 cut(s)	1381
KroNI	GCCGGC	1 cut(s)	1383
Kzo9I	GATC	8 cut(s)	79, 173, 231, 705, 1286, 1330, 1369, 1612
LmnI	GCTCC	6 cut(s)	52, 174, 396, 510, 802, 1729
Lsp1109I	GCAGC	8 cut(s)	23, 591, 637, 1231, 1240, 1300, 1408, 1483
LweI	GCATC	2 cut(s)	156, 195
MaeI	CTAG	3 cut(s)	834, 849, 1646
MaeII	ACGT	2 cut(s)	243, 1674
MaeIII	GTNAC	6 cut(s)	595, 844, 1156, 1361, 1401, 1658
MalI	GATC	8 cut(s)	81, 175, 233, 707, 1288, 1332, 1371, 1614
MboI	GATC	8 cut(s)	79, 173, 231, 705, 1286, 1330, 1369, 1612
MboII	GAAGA	5 cut(s)	307, 394, 621, 1201, 1367
MfeI	CAATTG	1 cut(s)	1395
MflI	RGATCY	1 cut(s)	1369
MhlI	GDGCHC	3 cut(s)	533, 1073, 1734
MluCI	AATT	6 cut(s)	576, 967, 1214, 1225, 1395, 1563
Mly113I	GGCGCC	1 cut(s)	417
MlyI	GAGTC	6 cut(s)	119, 374, 416, 525, 1231, 1274
MmeI	TCCRAC	4 cut(s)	250, 378, 435, 749
MroNI	GCCGGC	1 cut(s)	1381
MseI	TTAA	3 cut(s)	939, 1224, 1296
MslI	CAYNNNNRTG	2 cut(s)	494, 1014
MspA1I	CMGCKG	2 cut(s)	297, 604
MspI	CCGG	7 cut(s)	221, 508, 562, 1310, 1367, 1382, 1435
MspR9I	CCNGG	9 cut(s)	137, 221, 257, 311, 509, 686, 1367, 1426, 1435
MunI	CAATTG	1 cut(s)	1395
Mva1269I	GAATGC	3 cut(s)	664, 921, 1549
MvaI	CCWGG	5 cut(s)	137, 257, 311, 686, 1426
MvnI	CGCG	4 cut(s)	77, 264, 485, 1459
NaeI	GCCGGC	1 cut(s)	1383
NarI	GGCGCC	1 cut(s)	417
NciI	CCSGG	4 cut(s)	221, 509, 1367, 1435
NdeII	GATC	8 cut(s)	79, 173, 231, 705, 1286, 1330, 1369, 1612
NgoMIV	GCCGGC	1 cut(s)	1381
NlaIII	CATG	2 cut(s)	385, 1639
NlaIV	GGNNCC	6 cut(s)	86, 392, 418, 512, 810, 1581
NmeAIII	GCCGAG	1 cut(s)	133
NmuCI	GTSAC	3 cut(s)	595, 844, 1401
NruI	TCGCGA	1 cut(s)	485
NsbI	TGCGCA	1 cut(s)	819
NspI	RCATGY	1 cut(s)	1639
NspV	TTCGAA	1 cut(s)	998
PaeR7I	CTCGAG	3 cut(s)	122, 362, 1721
PcsI	WCGNNNNNNNCGW	5 cut(s)	129, 240, 447, 995, 1671
PctI	GAATGC	3 cut(s)	664, 921, 1549
PdiI	GCCGGC	1 cut(s)	1383
PfeI	GAWTC	4 cut(s)	457, 721, 749, 1000
PflFI	GACNNNGTC	1 cut(s)	515
PfoI	TCCNGGA	1 cut(s)	507
Ple19I	CGATCG	1 cut(s)	1289
PleI	GAGTC	6 cut(s)	118, 373, 415, 524, 1231, 1273
PluTI	GGCGCC	1 cut(s)	420
PpsI	GAGTC	6 cut(s)	118, 373, 415, 524, 1231, 1273
Ppu21I	YACGTR	1 cut(s)	1675
PpuMI	RGGWCCY	1 cut(s)	85
PshBI	ATTAAT	1 cut(s)	939
Psp124BI	GAGCTC	2 cut(s)	533, 1734
Psp5II	RGGWCCY	1 cut(s)	85
Psp6I	CCWGG	5 cut(s)	135, 255, 309, 684, 1424
PspFI	CCCAGC	3 cut(s)	465, 917, 1462
PspGI	CCWGG	5 cut(s)	135, 255, 309, 684, 1424
PspN4I	GGNNCC	6 cut(s)	86, 392, 418, 512, 810, 1581
PspPPI	RGGWCCY	1 cut(s)	85
PspXI	VCTCGAGB	2 cut(s)	122, 362
PstI	CTGCAG	1 cut(s)	1258
PsuI	RGATCY	1 cut(s)	1369
PsyI	GACNNNGTC	1 cut(s)	515
PvuI	CGATCG	1 cut(s)	1289
RruI	TCGCGA	1 cut(s)	485
RsaI	GTAC	1 cut(s)	1717
RsaNI	GTAC	1 cut(s)	1716
RseI	CAYNNNNRTG	2 cut(s)	494, 1014
Rsr2I	CGGWCCG	1 cut(s)	223
RsrII	CGGWCCG	1 cut(s)	223
SacI	GAGCTC	2 cut(s)	533, 1734
SalI	GTCGAC	1 cut(s)	149
SaqAI	TTAA	3 cut(s)	939, 1224, 1296
Sau3AI	GATC	8 cut(s)	79, 173, 231, 705, 1286, 1330, 1369, 1612
ScaI	AGTACT	1 cut(s)	1717
SchI	GAGTC	6 cut(s)	119, 374, 416, 525, 1231, 1274
ScrFI	CCNGG	9 cut(s)	137, 221, 257, 311, 509, 686, 1367, 1426, 1435
SduI	GDGCHC	3 cut(s)	533, 1073, 1734
SfaNI	GCATC	2 cut(s)	156, 195
SfcI	CTRYAG	1 cut(s)	1254
SfiI	GGCCNNNNNGGCC	1 cut(s)	104
SfoI	GGCGCC	1 cut(s)	418
Sfr274I	CTCGAG	3 cut(s)	122, 362, 1721
SfuI	TTCGAA	1 cut(s)	998
SinI	GGWCC	9 cut(s)	85, 223, 259, 474, 511, 682, 808, 1445, 1617
SlaI	CTCGAG	3 cut(s)	122, 362, 1721
SmiMI	CAYNNNNRTG	2 cut(s)	494, 1014
SmlI	CTYRAG	7 cut(s)	89, 122, 362, 608, 1085, 1091, 1721
SmoI	CTYRAG	7 cut(s)	89, 122, 362, 608, 1085, 1091, 1721
Sse9I	AATT	6 cut(s)	576, 967, 1214, 1225, 1395, 1563
SspDI	GGCGCC	1 cut(s)	416
SspMI	CTAG	3 cut(s)	834, 849, 1646
SstI	GAGCTC	2 cut(s)	533, 1734
StyD4I	CCNGG	9 cut(s)	135, 219, 255, 309, 507, 684, 1365, 1424, 1433
TaaI	ACNGT	2 cut(s)	703, 883
TaiI	ACGT	2 cut(s)	246, 1677
TaqII	GACCGA	2 cut(s)	388, 528
TasI	AATT	6 cut(s)	576, 967, 1214, 1225, 1395, 1563
TatI	WGTACW	1 cut(s)	1715
TfiI	GAWTC	4 cut(s)	457, 721, 749, 1000
Tru1I	TTAA	3 cut(s)	939, 1224, 1296
Tru9I	TTAA	3 cut(s)	939, 1224, 1296
TscAI	CASTG	2 cut(s)	1263, 1646
TseFI	GTSAC	3 cut(s)	595, 844, 1401
TseI	GCWGC	8 cut(s)	11, 604, 650, 1219, 1253, 1313, 1421, 1496
Tsp45I	GTSAC	3 cut(s)	595, 844, 1401
TspDTI	ATGAA	3 cut(s)	398, 659, 914
TspGWI	ACGGA	3 cut(s)	244, 695, 1505
TspRI	CASTG	2 cut(s)	1263, 1646
Tth111I	GACNNNGTC	1 cut(s)	515
VpaK11BI	GGWCC	9 cut(s)	85, 223, 259, 474, 511, 682, 808, 1445, 1617
VspI	ATTAAT	1 cut(s)	939
XagI	CCTNNNNNAGG	2 cut(s)	47, 308
XapI	RAATTY	1 cut(s)	967
XceI	RCATGY	1 cut(s)	1639
XhoI	CTCGAG	3 cut(s)	122, 362, 1721
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	3 cut(s)	834, 849, 1646
ZraI	GACGTC	1 cut(s)	244
ZrmI	AGTACT	1 cut(s)	1717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.