AT3G26600

Armadillo/beta-catenin-like repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001438
Physical Location & Seq
Forward (+)
9769634 .. 9772122
2489 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G26600.1

Sequence Viewer

Length: 1848 bp
ATGGGAGAAGAAGAGAGTCGAATTGGAGACGAGCTTTCGATTTTGGTTCTCACGGCGGAGCGACTCCGTGTAGCTGTGGATGAAGCTGAATCATTCAAAACAGAGTGTGGCGAGGTTGGTAAACAAGTAGATCGGCTTGCTCAAATGCTTAGAACACTTGTTCGATTCGTCTCTAGTTCTTCTCAACAAGTTTATGATCGGCCGATTCGTAGAGTTATCGTCGATGTTAAGAAGAATCTCGAGCGTGGTTTTGCTCTTGTTCGTAAGTGTAGGAGACACAATATAATCCGACGAGTTTGTACTATCATCAACGCTGCTGATTTTCGTAAGGTGATTAATCTTCTGGAATCTTCTAATGGTGATGTGAAATGGATTCTGAGTGTGTTTGATTCCGACGGAGATGGAAGTTTTGGTGGTGGAATCGTGATTTCGCTTCCTCCGATTGCTACGAATGATCCGATTTTGCCTTGGGTTTGGTCTTTGGTTGCGTCGATACAGATGGGGAAATTGGTTGATAAGATTGATGCGGCGAATCAGCTTGGTTCTCTTGCCGGAGATAATGATCGGAATAAGAAGATTATTGTTGATGAAGGTGGTGTTTCTCCGTTGTTAAGGCTTTTAAAGGAGAGTTCATCGGCGGAGGGGCAAATCGCGGCGGCTACTGCGTTAGGGTTGTTGGCTTGTGATGAAGATAAGGTTAGGTCTATTGTTAATGAACTTGGTGTTCCGATTATTGTTCAGGTTCTTGGTGATTCTTCTGTTAGAGTTCAGATTAAGGTAGCTACATTGGTTGCTAGAATGGCTGAACATGATCCTGTTGCTCAAGATGAGTTTGCTAGGCAGAGTGTGATTAAGCCATTAGTTACGTTGCTTTCGCTTGATGTGTTTGTTGATGATATTCATTTGAGTAAGCATAATAGTATTCACTCTCTTGTTCAGATGAACAAAGAGGTTGAGAAAGATCCGTCTTCGAAGCTTTATAGGCCGCTTAAGAGTTCTAAGTCGAATGTGTATCGTGACATTGGTGGTAGTGGAAGTAGAACTGGGAATTTCAAGAAGGAGAGGGATAATGAGAATCCTGAGGTGAAACATGAGCTTAAGGTCAATTGTGCGGAAGCTTTGTGGATGCTTGCTCGAGGAAATGTAGCGAATAGTAGGAGGATTACGGAAACGAAAGGGTTGCTTTCTTTGGCGAAGATTGTGGAAAAGGAAGTTGGTGAATTGCAATATAATTGTTTGATGACTCTGATGGAGATAACCGCTGCTGCGGAGTCGAGTGCTGACCTTAGACGGGCAGCATTCAAGACTAATTCTCCTGCTGCTAAAGCTGTTATTGATCAGATGTTATGGATAATCAAAGATGTCGATAGCCCGATTTTAAAAATCCCAGCGATTCAATCTATCGGGTCATTGGCACGGACATTCCCGGCAAGAGAAACGAGAATGATCAAGCCATTGGTTGAGAAACTCGGTAGTAGCAACCAAGAAGTGGCTATAACAGCTGTAATTTCATTGCAGAAATTCGTATGTCCCGAGAACTTCCTCTGCGCAGAGCACTCGAAGAACATAATCGAATACGGAGCAATCCCGTTATTGATGAAACTAATAAGGAACGTCGAGCAGCAAATGCAGTTACAGTGTCTAGCTTTACTCTGCTACCTTTCCGTGAATGCCAGTAACCACCAACAGTTGGAACAGGCCAAGGTTTTGACGGTGCTCGAAGGTGCAGAACGTTTGGCGGGTCTGCAGAATATGGAGTTGAGAGAACTCGTGTCGAAAGCTATATATCAGCTAAGTCTATACAATGCAGGAAGTCACAGTCAAATGCTATCGTATGTTGGTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

615

Amino Acids

67.81

Weight (kDa)

7.94

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7792 PF25055 10 - 130 3.2e-46 Domain of unknown function (DUF7792)
ARM_PUB PF25598 172 - 295 1e-05 Plant U-box protein ARM repeat region
Arm PF00514 187 - 227 1.4e-07 Armadillo/beta-catenin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1549
AccB7I CCANNNNNTGG 2 cut(s) 1489, 1690
AccII CGCG 1 cut(s) 653
AclI AACGTT 1 cut(s) 1732
AclWI GGATC 3 cut(s) 449, 806, 956
AcoI YGGCCR 1 cut(s) 200
AcsI RAATTY 2 cut(s) 1048, 1520
AfaI GTAC 1 cut(s) 301
AfiI CCNNNNNNNGG 3 cut(s) 1291, 1489, 1690
AflII CTTAAG 2 cut(s) 989, 1097
AgsI TTSAA 4 cut(s) 97, 1054, 1303, 1397
AjuI GAANNNNNNNTTGG 2 cut(s) 1197, 1229
Alw21I GWGCWC 2 cut(s) 1557, 1719
Alw26I GTCTC 3 cut(s) 21, 175, 268
AlwI GGATC 3 cut(s) 449, 806, 956
Ama87I CYCGRG 3 cut(s) 239, 1134, 1532
AoxI GGCC 3 cut(s) 200, 983, 1698
ApeKI GCWGC 6 cut(s) 314, 1262, 1265, 1295, 1319, 1621
ApoI RAATTY 2 cut(s) 1048, 1520
AseI ATTAAT 1 cut(s) 336
AspLEI GCGC 1 cut(s) 1550
AspS9I GGNCC 1 cut(s) 1841
AsuC2I CCSGG 1 cut(s) 1427
AsuHPI GGTGA 5 cut(s) 343, 371, 761, 1096, 1229
AsuII TTCGAA 1 cut(s) 971
AvaI CYCGRG 3 cut(s) 239, 1134, 1532
AvaII GGWCC 1 cut(s) 1841
AxyI CCTNAGG 1 cut(s) 1080
BauI CACGAG 1 cut(s) 1769
BbsI GAAGAC 1 cut(s) 960
Bbv12I GWGCWC 2 cut(s) 1557, 1719
BbvI GCAGC 6 cut(s) 301, 1249, 1252, 1306, 1307, 1633
BccI CCATC 3 cut(s) 395, 493, 1243
BceAI ACGGC 1 cut(s) 69
BcgI CGANNNNNNTGC 4 cut(s) 1162, 1196, 1539, 1573
BclI TGATCA 2 cut(s) 1336, 1446
BcnI CCSGG 1 cut(s) 1427
BcoDI GTCTC 3 cut(s) 21, 175, 268
BfaI CTAG 4 cut(s) 174, 795, 837, 1643
BfmI CTRYAG 1 cut(s) 1745
BfrI CTTAAG 2 cut(s) 989, 1097
Bme1390I CCNGG 1 cut(s) 1427
Bme18I GGWCC 1 cut(s) 1841
BmeT110I CYCGRG 3 cut(s) 239, 1134, 1532
BmgT120I GGNCC 1 cut(s) 1841
BmrFI CCNGG 1 cut(s) 1427
BmrI ACTGGG 1 cut(s) 1053
BmsI GCATC 2 cut(s) 514, 1116
BmuI ACTGGG 1 cut(s) 1053
BpiI GAAGAC 1 cut(s) 960
Bpu14I TTCGAA 1 cut(s) 971
BpuEI CTTGAG 1 cut(s) 807
BpuMI CCSGG 1 cut(s) 1427
BsaBI GATNNNNATC 1 cut(s) 561
BsaJI CCNNGG 2 cut(s) 467, 1701
BsaXI ACNNNNNCTCC 2 cut(s) 1297, 1327
Bsc4I CCNNNNNNNGG 3 cut(s) 1291, 1489, 1690
Bse1I ACTGG 2 cut(s) 1048, 1674
Bse21I CCTNAGG 1 cut(s) 1080
Bse3DI GCAATG 1 cut(s) 1511
Bse8I GATNNNNATC 1 cut(s) 561
BseDI CCNNGG 2 cut(s) 467, 1701
BseGI GGATG 2 cut(s) 85, 1131
BseJI GATNNNNATC 1 cut(s) 561
BseLI CCNNNNNNNGG 3 cut(s) 1291, 1489, 1690
BseMI GCAATG 1 cut(s) 1511
BseMII CTCAG 2 cut(s) 368, 1071
BseNI ACTGG 2 cut(s) 1048, 1674
BseX3I CGGCCG 1 cut(s) 200
BseXI GCAGC 6 cut(s) 301, 1249, 1252, 1306, 1307, 1633
BseYI CCCAGC 1 cut(s) 1387
BsgI GTGCAG 1 cut(s) 1746
Bsh1236I CGCG 1 cut(s) 653
Bsh1285I CGRYCG 1 cut(s) 203
BshFI GGCC 3 cut(s) 202, 985, 1700
BsiEI CGRYCG 1 cut(s) 203
BsiHKAI GWGCWC 2 cut(s) 1557, 1719
BsiHKCI CYCGRG 3 cut(s) 239, 1134, 1532
BsiSI CCGG 2 cut(s) 552, 1427
BslFI GGGAC 1 cut(s) 1515
BslI CCNNNNNNNGG 3 cut(s) 1291, 1489, 1690
BsmAI GTCTC 3 cut(s) 21, 175, 268
BsmBI CGTCTC 2 cut(s) 21, 175
BsmFI GGGAC 1 cut(s) 1515
BsmI GAATGC 2 cut(s) 1298, 1675
BsnI GGCC 3 cut(s) 202, 985, 1700
BsoBI CYCGRG 3 cut(s) 239, 1134, 1532
Bsp119I TTCGAA 1 cut(s) 971
Bsp1286I GDGCHC 2 cut(s) 1557, 1719
Bsp143I GATC 8 cut(s) 130, 196, 454, 562, 811, 961, 1336, 1446
BspANI GGCC 3 cut(s) 202, 985, 1700
BspCNI CTCAG 2 cut(s) 369, 1072
BspFNI CGCG 1 cut(s) 653
BspMAI CTGCAG 1 cut(s) 1749
BspPI GGATC 3 cut(s) 449, 806, 956
BspT104I TTCGAA 1 cut(s) 971
BspTI CTTAAG 2 cut(s) 989, 1097
BsrDI GCAATG 1 cut(s) 1511
BsrI ACTGG 2 cut(s) 1048, 1674
BssECI CCNNGG 2 cut(s) 467, 1701
BssMI GATC 8 cut(s) 130, 196, 454, 562, 811, 961, 1336, 1446
BssSI CACGAG 1 cut(s) 1769
BssT1I CCWWGG 2 cut(s) 467, 1701
Bst2BI CACGAG 1 cut(s) 1769
Bst4CI ACNGT 4 cut(s) 1638, 1689, 1714, 1820
Bst6I CTCTTC 1 cut(s) 6
BstAFI CTTAAG 2 cut(s) 989, 1097
BstAPI GCANNNNNTGC 1 cut(s) 1627
BstBI TTCGAA 1 cut(s) 971
BstC8I GCNNGC 2 cut(s) 138, 1131
BstDEI CTNAG 6 cut(s) 149, 377, 999, 1080, 1286, 1793
BstF5I GGATG 2 cut(s) 85, 1131
BstFNI CGCG 1 cut(s) 653
BstHHI GCGC 1 cut(s) 1550
BstKTI GATC 8 cut(s) 133, 199, 457, 565, 814, 964, 1339, 1449
BstMAI GTCTC 3 cut(s) 21, 175, 268
BstMBI GATC 8 cut(s) 130, 196, 454, 562, 811, 961, 1336, 1446
BstMCI CGRYCG 1 cut(s) 203
BstMWI GCNNNNNNNGC 6 cut(s) 662, 800, 982, 1325, 1499, 1627
BstSCI CCNGG 1 cut(s) 1425
BstSFI CTRYAG 1 cut(s) 1745
BstUI CGCG 1 cut(s) 653
BstV1I GCAGC 6 cut(s) 301, 1249, 1252, 1306, 1307, 1633
BstV2I GAAGAC 1 cut(s) 960
BstX2I RGATCY 1 cut(s) 961
BstYI RGATCY 1 cut(s) 961
BstZI CGGCCG 1 cut(s) 200
Bsu36I CCTNAGG 1 cut(s) 1080
BsuRI GGCC 3 cut(s) 202, 985, 1700
BtsCI GGATG 2 cut(s) 85, 1131
BtsIMutI CAGTG 1 cut(s) 1643
Cac8I GCNNGC 2 cut(s) 138, 1131
CfoI GCGC 1 cut(s) 1550
Cfr13I GGNCC 1 cut(s) 1841
CseI GACGC 1 cut(s) 477
Csp6I GTAC 1 cut(s) 300
CviAII CATG 2 cut(s) 809, 1091
CviQI GTAC 1 cut(s) 300
DdeI CTNAG 6 cut(s) 149, 377, 999, 1080, 1286, 1793
DpnI GATC 8 cut(s) 132, 198, 456, 564, 813, 963, 1338, 1448
DpnII GATC 8 cut(s) 130, 196, 454, 562, 811, 961, 1336, 1446
DraI TTTAAA 2 cut(s) 621, 1380
EaeI YGGCCR 1 cut(s) 200
EagI CGGCCG 1 cut(s) 200
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
EciI GGCGGA 2 cut(s) 71, 653
EclXI CGGCCG 1 cut(s) 200
Eco130I CCWWGG 2 cut(s) 467, 1701
Eco47I GGWCC 1 cut(s) 1841
Eco52I CGGCCG 1 cut(s) 200
Eco81I CCTNAGG 1 cut(s) 1080
Eco88I CYCGRG 3 cut(s) 239, 1134, 1532
EcoT14I CCWWGG 2 cut(s) 467, 1701
ErhI CCWWGG 2 cut(s) 467, 1701
Esp3I CGTCTC 2 cut(s) 21, 175
FaeI CATG 2 cut(s) 812, 1094
FalI AAGNNNNNCTT 2 cut(s) 1167, 1199
FaqI GGGAC 1 cut(s) 1515
FatI CATG 2 cut(s) 808, 1090
FauI CCCGC 1 cut(s) 1732
FbaI TGATCA 2 cut(s) 1336, 1446
FokI GGATG 2 cut(s) 92, 1138
FspBI CTAG 4 cut(s) 174, 795, 837, 1643
FspI TGCGCA 1 cut(s) 1549
GlaI GCGC 1 cut(s) 1549
GsaI CCCAGC 1 cut(s) 1391
HaeIII GGCC 3 cut(s) 202, 985, 1700
HapII CCGG 2 cut(s) 552, 1427
HgaI GACGC 1 cut(s) 477
HhaI GCGC 1 cut(s) 1550
Hin1II CATG 2 cut(s) 812, 1094
Hin6I GCGC 1 cut(s) 1548
HinP1I GCGC 1 cut(s) 1548
HindIII AAGCTT 2 cut(s) 974, 1116
HpaII CCGG 2 cut(s) 552, 1427
HphI GGTGA 5 cut(s) 343, 371, 761, 1096, 1229
Hpy166II GTNNAC 1 cut(s) 122
Hpy188III TCNNGA 9 cut(s) 239, 344, 424, 824, 1016, 1054, 1079, 1303, 1532
Hpy8I GTNNAC 1 cut(s) 122
Hpy99I CGWCG 5 cut(s) 224, 294, 398, 493, 1619
HpyAV CCTTC 3 cut(s) 584, 1051, 1715
HpyCH4III ACNGT 4 cut(s) 1638, 1689, 1714, 1820
HpyCH4IV ACGT 3 cut(s) 866, 1614, 1732
HpyCH4V TGCA 6 cut(s) 1225, 1516, 1630, 1727, 1747, 1808
HpyF10VI GCNNNNNNNGC 6 cut(s) 662, 800, 982, 1325, 1499, 1627
HpyF3I CTNAG 6 cut(s) 149, 377, 999, 1080, 1286, 1793
HpySE526I ACGT 3 cut(s) 866, 1614, 1732
Hsp92II CATG 2 cut(s) 812, 1094
HspAI GCGC 1 cut(s) 1548
Ksp22I TGATCA 2 cut(s) 1336, 1446
Kzo9I GATC 8 cut(s) 130, 196, 454, 562, 811, 961, 1336, 1446
LmnI GCTCC 2 cut(s) 58, 1580
Lsp1109I GCAGC 6 cut(s) 301, 1249, 1252, 1306, 1307, 1633
LweI GCATC 2 cut(s) 514, 1116
MaeI CTAG 4 cut(s) 174, 795, 837, 1643
MaeII ACGT 3 cut(s) 866, 1614, 1732
MaeIII GTNAC 5 cut(s) 862, 1016, 1632, 1676, 1814
MalI GATC 8 cut(s) 132, 198, 456, 564, 813, 963, 1338, 1448
MboI GATC 8 cut(s) 130, 196, 454, 562, 811, 961, 1336, 1446
MfeI CAATTG 1 cut(s) 1105
MflI RGATCY 1 cut(s) 961
MhlI GDGCHC 2 cut(s) 1557, 1719
MluCI AATT 9 cut(s) 21, 506, 1048, 1105, 1220, 1231, 1309, 1506, 1520
MlyI GAGTC 4 cut(s) 25, 57, 1237, 1280
MmeI TCCRAC 3 cut(s) 313, 417, 1671
MnlI CCTC 9 cut(s) 106, 447, 634, 943, 1056, 1075, 1130, 1152, 1553
MspA1I CMGCKG 2 cut(s) 1262, 1502
MspCI CTTAAG 2 cut(s) 989, 1097
MspI CCGG 2 cut(s) 552, 1427
MspR9I CCNGG 1 cut(s) 1427
MunI CAATTG 1 cut(s) 1105
Mva1269I GAATGC 2 cut(s) 1298, 1675
MvnI CGCG 1 cut(s) 653
MwoI GCNNNNNNNGC 6 cut(s) 662, 800, 982, 1325, 1499, 1627
NciI CCSGG 1 cut(s) 1427
NdeII GATC 8 cut(s) 130, 196, 454, 562, 811, 961, 1336, 1446
NlaIII CATG 2 cut(s) 812, 1094
NmuCI GTSAC 2 cut(s) 1016, 1814
NsbI TGCGCA 1 cut(s) 1549
NspV TTCGAA 1 cut(s) 971
PaeR7I CTCGAG 2 cut(s) 239, 1134
PcsI WCGNNNNNNNCGW 4 cut(s) 205, 437, 455, 1530
PctI GAATGC 2 cut(s) 1298, 1675
PflMI CCANNNNNTGG 2 cut(s) 1489, 1690
PleI GAGTC 4 cut(s) 24, 57, 1237, 1279
PpsI GAGTC 4 cut(s) 24, 57, 1237, 1279
PshBI ATTAAT 1 cut(s) 336
Psp1406I AACGTT 1 cut(s) 1732
PspFI CCCAGC 1 cut(s) 1387
PspPI GGNCC 1 cut(s) 1841
PspXI VCTCGAGB 1 cut(s) 1134
PstI CTGCAG 1 cut(s) 1749
PsuI RGATCY 1 cut(s) 961
PvuII CAGCTG 1 cut(s) 1502
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
Sau3AI GATC 8 cut(s) 130, 196, 454, 562, 811, 961, 1336, 1446
Sau96I GGNCC 1 cut(s) 1841
SchI GAGTC 4 cut(s) 25, 57, 1237, 1280
ScrFI CCNGG 1 cut(s) 1427
SduI GDGCHC 2 cut(s) 1557, 1719
SfaNI GCATC 2 cut(s) 514, 1116
SfcI CTRYAG 1 cut(s) 1745
Sfr274I CTCGAG 2 cut(s) 239, 1134
SfuI TTCGAA 1 cut(s) 971
SinI GGWCC 1 cut(s) 1841
SlaI CTCGAG 2 cut(s) 239, 1134
SmlI CTYRAG 5 cut(s) 239, 822, 989, 1097, 1134
SmoI CTYRAG 5 cut(s) 239, 822, 989, 1097, 1134
Sse9I AATT 9 cut(s) 21, 506, 1048, 1105, 1220, 1231, 1309, 1506, 1520
SspMI CTAG 4 cut(s) 174, 795, 837, 1643
StyD4I CCNGG 1 cut(s) 1425
StyI CCWWGG 2 cut(s) 467, 1701
TaaI ACNGT 4 cut(s) 1638, 1689, 1714, 1820
TaiI ACGT 3 cut(s) 869, 1617, 1735
TasI AATT 9 cut(s) 21, 506, 1048, 1105, 1220, 1231, 1309, 1506, 1520
TatI WGTACW 1 cut(s) 299
TauI GCSGC 4 cut(s) 530, 656, 659, 988
TscAI CASTG 1 cut(s) 1643
TseFI GTSAC 2 cut(s) 1016, 1814
TseI GCWGC 6 cut(s) 314, 1262, 1265, 1295, 1319, 1621
Tsp45I GTSAC 2 cut(s) 1016, 1814
TspDTI ATGAA 9 cut(s) 96, 603, 621, 702, 729, 890, 956, 1500, 1613
TspGWI ACGGA 8 cut(s) 56, 411, 594, 954, 1181, 1432, 1593, 1654
TspRI CASTG 1 cut(s) 1643
Van91I CCANNNNNTGG 2 cut(s) 1489, 1690
Vha464I CTTAAG 2 cut(s) 989, 1097
VpaK11BI GGWCC 1 cut(s) 1841
VspI ATTAAT 1 cut(s) 336
XapI RAATTY 2 cut(s) 1048, 1520
XhoI CTCGAG 2 cut(s) 239, 1134
XspI CTAG 4 cut(s) 174, 795, 837, 1643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.