Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001438

Physical Location & Seq

Genomic Coordinates Forward (+)

19559070 .. 19559327

Gene Structure 258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g14980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGAGATTATTACAGACAACTGATCGAACTAGTGAACGGGGTCATGTCAATTGTTTAGTACTACTATGCTATCTAGCATCGCATGTTGGCAATAGCAAGGCTCTTGAACAAGCGCGGGCATTGAATACTCTTGAGGGGGGAGCTCGATATCTTGTAGCTCAATATCCCGATTTGAGGGATTTGTTAGCCAAAGCCATACACAATCTCACACTTTATCAGGCTGGAGCTCATCCCCACAGGCAAACCTTCATACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008285 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

86

Amino Acids

9.5

Weight (kDa)

9.18

Isoelectric Point (pI)

21.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26600 AT3G26600
fragaria_vesca	FvH4_4g25480 FvH4_5g06080
malus_domestica	MD06G1167100.v1.1 MD13G1102400.v1.1 MD14G1172700.v1.1 MD16G1102800.v1.1
prunus_persica	Prupe.1G089500_v2.0.a1 Prupe.1G243400_v2.0.a1 Prupe.5G166900_v2.0.a1
pyrus_communis	pycom06g14970 pycom06g14980 pycom13g08950 pycom14g14410 pycom16g08740
rosa_chinensis	RchiOBHm_Chr4g0423211 RchiOBHm_Chr4g0432811 RchiOBHm_Chr7g0192761 RchiOBHm_Chr7g0218041
rosa_laevigata	RLG00000004331 RLG00000006810
rosa_multiflora	Rmu_co8276235.1_g000001 Rmu_sc0001516.1_g000053 Rmu_sc0004101.1_g000049 Rmu_sc0005234.1_g000003 Rmu_sc0008148.1_g000037
rosa_roxburghii	Rroxscaffold_2G00090530 Rroxscaffold_3G00262710 Rroxscaffold_5G00374250 Rroxscaffold_7G00212840
rosa_rugosa	Rorug04G0263100 Rorug07G0004500
rosa_samantha	Rh1AG125500 Rh2AG461900 Rh2CG448900 Rh4AG317200 Rh4AG322300 Rh4BG325400 Rh4CG340300 Rh4DG320600 Rh4DG326400 Rh5BG349900 Rh5CG383400 Rh7AG129500 Rh7AG315400 Rh7BG130800 Rh7CG061100 Rh7CG134200 Rh7DG131700
rosa_wichuraiana	Rw4G027590 Rw7G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	115
AciI	CCGC	1 cut(s)	115
AfaI	GTAC	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	174
AgsI	TTSAA	2 cut(s)	107, 124
AhlI	ACTAGT	1 cut(s)	29
AluBI	AGCT	3 cut(s)	143, 158, 227
AluI	AGCT	3 cut(s)	143, 158, 227
Alw21I	GWGCWC	2 cut(s)	145, 229
AspLEI	GCGC	1 cut(s)	115
BanII	GRGCYC	2 cut(s)	145, 229
Bbv12I	GWGCWC	2 cut(s)	145, 229
BcuI	ACTAGT	1 cut(s)	29
BfaI	CTAG	2 cut(s)	30, 74
BmcAI	AGTACT	1 cut(s)	60
BmsI	GCATC	1 cut(s)	86
BpmI	CTGGAG	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	174
Bsh1236I	CGCG	1 cut(s)	115
BsiHKAI	GWGCWC	2 cut(s)	145, 229
BslI	CCNNNNNNNGG	1 cut(s)	174
Bsp1286I	GDGCHC	2 cut(s)	145, 229
Bsp143I	GATC	1 cut(s)	22
BspACI	CCGC	1 cut(s)	115
BspFNI	CGCG	1 cut(s)	115
BssMI	GATC	1 cut(s)	22
Bst4CI	ACNGT	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	229
BstFNI	CGCG	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	22
BstNSI	RCATGY	1 cut(s)	86
BstUI	CGCG	1 cut(s)	115
BtgZI	GCGATG	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	117
CfoI	GCGC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	59
CviAII	CATG	2 cut(s)	44, 83
CviJI	RGCY	7 cut(s)	101, 143, 158, 188, 194, 221, 227
CviKI_1	RGCY	7 cut(s)	101, 143, 158, 188, 194, 221, 227
CviQI	GTAC	1 cut(s)	59
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
Ecl136II	GAGCTC	2 cut(s)	143, 227
Eco24I	GRGCYC	2 cut(s)	145, 229
Eco32I	GATATC	1 cut(s)	149
Eco53kI	GAGCTC	2 cut(s)	143, 227
EcoICRI	GAGCTC	2 cut(s)	143, 227
EcoRV	GATATC	1 cut(s)	149
EcoT38I	GRGCYC	2 cut(s)	145, 229
FaeI	CATG	2 cut(s)	47, 86
FaiI	YATR	5 cut(s)	45, 67, 84, 197, 251
FatI	CATG	2 cut(s)	43, 82
FauI	CCCGC	1 cut(s)	108
FokI	GGATG	1 cut(s)	216
FriOI	GRGCYC	2 cut(s)	145, 229
FspBI	CTAG	2 cut(s)	30, 74
GlaI	GCGC	1 cut(s)	114
GsuI	CTGGAG	1 cut(s)	243
HhaI	GCGC	1 cut(s)	115
Hin1II	CATG	2 cut(s)	47, 86
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188III	TCNNGA	3 cut(s)	104, 131, 167
Hpy8I	GTNNAC	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	1 cut(s)	255
Hsp92II	CATG	2 cut(s)	47, 86
HspAI	GCGC	1 cut(s)	113
Kzo9I	GATC	1 cut(s)	22
LmnI	GCTCC	2 cut(s)	140, 224
LpnPI	CCDG	3 cut(s)	203, 207, 223
LweI	GCATC	1 cut(s)	86
MaeI	CTAG	2 cut(s)	30, 74
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MfeI	CAATTG	1 cut(s)	49
MhlI	GDGCHC	2 cut(s)	145, 229
MluCI	AATT	1 cut(s)	49
MnlI	CCTC	2 cut(s)	127, 168
MunI	CAATTG	1 cut(s)	49
MvnI	CGCG	1 cut(s)	115
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	2 cut(s)	47, 86
NspI	RCATGY	1 cut(s)	86
Psp124BI	GAGCTC	2 cut(s)	145, 229
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
SacI	GAGCTC	2 cut(s)	145, 229
Sau3AI	GATC	1 cut(s)	22
ScaI	AGTACT	1 cut(s)	60
SduI	GDGCHC	2 cut(s)	145, 229
SetI	ASST	4 cut(s)	145, 160, 229, 248
SfaNI	GCATC	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
SpeI	ACTAGT	1 cut(s)	29
Sse9I	AATT	1 cut(s)	49
SsiI	CCGC	1 cut(s)	115
SspMI	CTAG	2 cut(s)	30, 74
SstI	GAGCTC	2 cut(s)	145, 229
TaaI	ACNGT	1 cut(s)	255
TaqI	TCGA	2 cut(s)	25, 145
TasI	AATT	1 cut(s)	49
TatI	WGTACW	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	238
XceI	RCATGY	1 cut(s)	86
XspI	CTAG	2 cut(s)	30, 74
ZrmI	AGTACT	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.