Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008148.1

Orthogroup ID

OG0001438

Physical Location & Seq

Genomic Coordinates Forward (+)

156213 .. 156455

Gene Structure 243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008148.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

atgctccgatccgcagtccggatcgttgccacgtccccctccctctacgagcgccccggccaaagcatcgccgccgacggggccaagaacctcgaccgcgccctcaccctcgtccgcaagtgcaagcacagcagcgtcctccaccaggtcttttccatcaccaccaccgccaacttccgcaaggtgtccaacctcctcgagtcctccatcggcgacatgaagtgggtcctctctgtcttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008285 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

80

Amino Acids

8.82

Weight (kDa)

10.28

Isoelectric Point (pI)

30.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26600 AT3G26600
fragaria_vesca	FvH4_4g25480 FvH4_5g06080
malus_domestica	MD06G1167100.v1.1 MD13G1102400.v1.1 MD14G1172700.v1.1 MD16G1102800.v1.1
prunus_persica	Prupe.1G089500_v2.0.a1 Prupe.1G243400_v2.0.a1 Prupe.5G166900_v2.0.a1
pyrus_communis	pycom06g14970 pycom06g14980 pycom13g08950 pycom14g14410 pycom16g08740
rosa_chinensis	RchiOBHm_Chr4g0423211 RchiOBHm_Chr4g0432811 RchiOBHm_Chr7g0192761 RchiOBHm_Chr7g0218041
rosa_laevigata	RLG00000004331 RLG00000006810
rosa_multiflora	Rmu_co8276235.1_g000001 Rmu_sc0001516.1_g000053 Rmu_sc0004101.1_g000049 Rmu_sc0005234.1_g000003 Rmu_sc0008148.1_g000037
rosa_roxburghii	Rroxscaffold_2G00090530 Rroxscaffold_3G00262710 Rroxscaffold_5G00374250 Rroxscaffold_7G00212840
rosa_rugosa	Rorug04G0263100 Rorug07G0004500
rosa_samantha	Rh1AG125500 Rh2AG461900 Rh2CG448900 Rh4AG317200 Rh4AG322300 Rh4BG325400 Rh4CG340300 Rh4DG320600 Rh4DG326400 Rh5BG349900 Rh5CG383400 Rh7AG129500 Rh7AG315400 Rh7BG130800 Rh7CG061100 Rh7CG134200 Rh7DG131700
rosa_wichuraiana	Rw4G027590 Rw7G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	99
AccIII	TCCGGA	1 cut(s)	18
AciI	CCGC	6 cut(s)	12, 72, 97, 115, 168, 178
AclWI	GGATC	2 cut(s)	3, 29
AcoI	YGGCCR	1 cut(s)	58
AfiI	CCNNNNNNNGG	3 cut(s)	18, 78, 145
AjiI	CACGTC	1 cut(s)	33
AjnI	CCWGG	1 cut(s)	144
AlwI	GGATC	2 cut(s)	3, 29
Ama87I	CYCGRG	1 cut(s)	197
Aor13HI	TCCGGA	1 cut(s)	18
AoxI	GGCC	2 cut(s)	58, 81
ApeKI	GCWGC	1 cut(s)	132
AspLEI	GCGC	2 cut(s)	54, 101
AspS9I	GGNCC	2 cut(s)	81, 226
AsuC2I	CCSGG	1 cut(s)	57
AsuHPI	GGTGA	2 cut(s)	97, 151
AvaI	CYCGRG	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	144
BccI	CCATC	2 cut(s)	164, 215
BciT130I	CCWGG	1 cut(s)	146
BcnI	CCSGG	1 cut(s)	57
BfaI	CTAG	1 cut(s)	241
BfoI	RGCGCY	1 cut(s)	55
BglI	GCCNNNNNGGC	1 cut(s)	80
BisI	GCNGC	2 cut(s)	72, 133
BlsI	GCNGC	2 cut(s)	73, 134
Bme1390I	CCNGG	2 cut(s)	57, 146
Bme18I	GGWCC	1 cut(s)	226
BmeT110I	CYCGRG	1 cut(s)	197
BmgBI	CACGTC	1 cut(s)	33
BmgT120I	GGNCC	2 cut(s)	81, 226
BmiI	GGNNCC	2 cut(s)	82, 227
BmrFI	CCNGG	2 cut(s)	57, 146
BmsI	GCATC	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	229
BpuMI	CCSGG	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	3 cut(s)	18, 78, 145
BseAI	TCCGGA	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	1 cut(s)	55
BseLI	CCNNNNNNNGG	3 cut(s)	18, 78, 145
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	144
Bsh1236I	CGCG	1 cut(s)	99
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	2 cut(s)	60, 83
BsiEI	CGRYCG	1 cut(s)	97
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	2 cut(s)	19, 57
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	3 cut(s)	18, 78, 145
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	2 cut(s)	60, 83
BsoBI	CYCGRG	1 cut(s)	197
Bsp13I	TCCGGA	1 cut(s)	18
Bsp143I	GATC	2 cut(s)	8, 21
BspACI	CCGC	6 cut(s)	12, 72, 97, 115, 168, 178
BspANI	GGCC	2 cut(s)	60, 83
BspEI	TCCGGA	1 cut(s)	18
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	2 cut(s)	82, 227
BspPI	GGATC	2 cut(s)	3, 29
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	2 cut(s)	8, 21
Bst2UI	CCWGG	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	125
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstFNI	CGCG	1 cut(s)	99
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	2 cut(s)	54, 101
BstKTI	GATC	2 cut(s)	11, 24
BstMBI	GATC	2 cut(s)	8, 21
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 129
BstNI	CCWGG	1 cut(s)	146
BstSCI	CCNGG	2 cut(s)	55, 144
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	144
BstV2I	GAAGAC	1 cut(s)	229
BsuRI	GGCC	2 cut(s)	60, 83
BtgZI	GCGATG	1 cut(s)	52
BtrI	CACGTC	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	125
CfoI	GCGC	2 cut(s)	54, 101
Cfr13I	GGNCC	2 cut(s)	81, 226
CseI	GACGC	1 cut(s)	124
CsiI	ACCWGGT	1 cut(s)	144
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	2 cut(s)	60, 83
CviKI_1	RGCY	2 cut(s)	60, 83
DpnI	GATC	2 cut(s)	10, 23
DpnII	GATC	2 cut(s)	8, 21
EaeI	YGGCCR	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	226
Eco88I	CYCGRG	1 cut(s)	197
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	144
FaeI	CATG	1 cut(s)	220
FaiI	YATR	1 cut(s)	218
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	1 cut(s)	216
Fnu4HI	GCNGC	2 cut(s)	72, 133
Fsp4HI	GCNGC	2 cut(s)	72, 133
FspBI	CTAG	1 cut(s)	241
GlaI	GCGC	2 cut(s)	53, 100
GluI	GCNGC	2 cut(s)	72, 133
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	2 cut(s)	60, 83
HapII	CCGG	2 cut(s)	19, 57
HgaI	GACGC	1 cut(s)	124
HhaI	GCGC	2 cut(s)	54, 101
Hin1II	CATG	1 cut(s)	220
Hin6I	GCGC	2 cut(s)	52, 99
HinP1I	GCGC	2 cut(s)	52, 99
HinfI	GANTC	1 cut(s)	200
HpaII	CCGG	2 cut(s)	19, 57
HphI	GGTGA	2 cut(s)	97, 151
Hpy188I	TCNGA	1 cut(s)	8
Hpy188III	TCNNGA	1 cut(s)	19
Hpy99I	CGWCG	1 cut(s)	80
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	1 cut(s)	123
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 129
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	1 cut(s)	220
HspAI	GCGC	2 cut(s)	52, 99
Kpn2I	TCCGGA	1 cut(s)	18
Kzo9I	GATC	2 cut(s)	8, 21
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	4 cut(s)	32, 70, 131, 158
Lsp1109I	GCAGC	1 cut(s)	144
LweI	GCATC	1 cut(s)	75
MabI	ACCWGGT	1 cut(s)	144
MaeI	CTAG	1 cut(s)	241
MaeII	ACGT	1 cut(s)	32
MalI	GATC	2 cut(s)	10, 23
MboI	GATC	2 cut(s)	8, 21
MboII	GAAGA	1 cut(s)	229
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	213
MroI	TCCGGA	1 cut(s)	18
MspI	CCGG	2 cut(s)	19, 57
MspR9I	CCNGG	2 cut(s)	57, 146
MvaI	CCWGG	1 cut(s)	146
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	2 cut(s)	80, 129
NciI	CCSGG	1 cut(s)	57
NdeII	GATC	2 cut(s)	8, 21
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	2 cut(s)	82, 227
PaeR7I	CTCGAG	1 cut(s)	197
PkrI	GCNGC	2 cut(s)	73, 134
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PpuMI	RGGWCCY	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	82, 227
PspPI	GGNCC	2 cut(s)	81, 226
PspPPI	RGGWCCY	1 cut(s)	226
PspXI	VCTCGAGB	1 cut(s)	197
SatI	GCNGC	2 cut(s)	72, 133
Sau3AI	GATC	2 cut(s)	8, 21
Sau96I	GGNCC	2 cut(s)	81, 226
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	2 cut(s)	57, 146
SetI	ASST	5 cut(s)	35, 93, 150, 186, 195
SexAI	ACCWGGT	1 cut(s)	144
SfaNI	GCATC	1 cut(s)	75
Sfr274I	CTCGAG	1 cut(s)	197
SinI	GGWCC	1 cut(s)	226
SlaI	CTCGAG	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SsiI	CCGC	6 cut(s)	12, 72, 97, 115, 168, 178
SspMI	CTAG	1 cut(s)	241
StyD4I	CCNGG	2 cut(s)	55, 144
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	2 cut(s)	93, 198
TauI	GCSGC	1 cut(s)	74
TseI	GCWGC	1 cut(s)	132
TspDTI	ATGAA	1 cut(s)	233
VpaK11BI	GGWCC	1 cut(s)	226
XagI	CCTNNNNNAGG	1 cut(s)	143
XhoI	CTCGAG	1 cut(s)	197
XspI	CTAG	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.