Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8276235.1

Orthogroup ID

OG0001438

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 380

Gene Structure 380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8276235.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 380 bp

tctccgtcttcgagttcgaagccaccaacctttccctgcctcccatcgccagcaacgacccgattctgagctgggtgtggtcctacatcgccaccattcagatgggtcagctcctggaccgagtcgagacggcgagttcactcgtctcgctggcgagggacaacgaccggaacaagaagataattgttaacgagggaggagtgacgccgctgctcaagcttttgaaagaggggtctttggcggaggcacagattgctgcggcgaatgctctatttcatatcgctacggaccaggagagggtttggactgcaatcgagttgaatgggattctgataatagtttcggttttgggggagctgcggcggcattgggattggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008285 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

125

Amino Acids

13.88

Weight (kDa)

4.9

Isoelectric Point (pI)

25.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26600 AT3G26600
fragaria_vesca	FvH4_4g25480 FvH4_5g06080
malus_domestica	MD06G1167100.v1.1 MD13G1102400.v1.1 MD14G1172700.v1.1 MD16G1102800.v1.1
prunus_persica	Prupe.1G089500_v2.0.a1 Prupe.1G243400_v2.0.a1 Prupe.5G166900_v2.0.a1
pyrus_communis	pycom06g14970 pycom06g14980 pycom13g08950 pycom14g14410 pycom16g08740
rosa_chinensis	RchiOBHm_Chr4g0423211 RchiOBHm_Chr4g0432811 RchiOBHm_Chr7g0192761 RchiOBHm_Chr7g0218041
rosa_laevigata	RLG00000004331 RLG00000006810
rosa_multiflora	Rmu_co8276235.1_g000001 Rmu_sc0001516.1_g000053 Rmu_sc0004101.1_g000049 Rmu_sc0005234.1_g000003 Rmu_sc0008148.1_g000037
rosa_roxburghii	Rroxscaffold_2G00090530 Rroxscaffold_3G00262710 Rroxscaffold_5G00374250 Rroxscaffold_7G00212840
rosa_rugosa	Rorug04G0263100 Rorug07G0004500
rosa_samantha	Rh1AG125500 Rh2AG461900 Rh2CG448900 Rh4AG317200 Rh4AG322300 Rh4BG325400 Rh4CG340300 Rh4DG320600 Rh4DG326400 Rh5BG349900 Rh5CG383400 Rh7AG129500 Rh7AG315400 Rh7BG130800 Rh7CG061100 Rh7CG134200 Rh7DG131700
rosa_wichuraiana	Rw4G027590 Rw7G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	208, 241, 259, 360, 363
AcyI	GRCGYC	1 cut(s)	205
AfiI	CCNNNNNNNGG	1 cut(s)	297
AgsI	TTSAA	2 cut(s)	225, 321
AjnI	CCWGG	2 cut(s)	113, 290
AluBI	AGCT	4 cut(s)	71, 111, 219, 357
AluI	AGCT	4 cut(s)	71, 111, 219, 357
Alw26I	GTCTC	2 cut(s)	121, 150
AlwNI	CAGNNNCTG	1 cut(s)	114
ApeKI	GCWGC	3 cut(s)	210, 256, 357
AspS9I	GGNCC	3 cut(s)	80, 117, 288
AsuII	TTCGAA	1 cut(s)	17
AvaII	GGWCC	3 cut(s)	80, 117, 288
BbvI	GCAGC	3 cut(s)	197, 243, 344
BccI	CCATC	2 cut(s)	52, 96
BceAI	ACGGC	1 cut(s)	146
BciT130I	CCWGG	2 cut(s)	115, 292
BcoDI	GTCTC	2 cut(s)	121, 150
BisI	GCNGC	7 cut(s)	208, 211, 257, 260, 358, 361, 364
BlsI	GCNGC	7 cut(s)	209, 212, 258, 261, 359, 362, 365
Bme1390I	CCNGG	2 cut(s)	115, 292
Bme18I	GGWCC	3 cut(s)	80, 117, 288
BmgT120I	GGNCC	3 cut(s)	80, 117, 288
BmrFI	CCNGG	2 cut(s)	115, 292
Bpu14I	TTCGAA	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	199
BsaHI	GRCGYC	1 cut(s)	205
BsaWI	WCCGGW	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
BseBI	CCWGG	2 cut(s)	115, 292
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	58
BseRI	GAGGAG	1 cut(s)	212
BseXI	GCAGC	3 cut(s)	197, 243, 344
BseYI	CCCAGC	1 cut(s)	71
Bsh1285I	CGRYCG	1 cut(s)	168
BsiEI	CGRYCG	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmAI	GTCTC	2 cut(s)	121, 150
BsmBI	CGTCTC	2 cut(s)	121, 150
BsmFI	GGGAC	1 cut(s)	172
BsmI	GAATGC	1 cut(s)	270
Bsp119I	TTCGAA	1 cut(s)	17
BspACI	CCGC	5 cut(s)	208, 241, 259, 360, 363
BspCNI	CTCAG	1 cut(s)	59
BspT104I	TTCGAA	1 cut(s)	17
BssNI	GRCGYC	1 cut(s)	205
Bst2UI	CCWGG	2 cut(s)	115, 292
BstACI	GRCGYC	1 cut(s)	205
BstAPI	GCANNNNNTGC	1 cut(s)	253
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	51, 152
BstDEI	CTNAG	1 cut(s)	67
BstMAI	GTCTC	2 cut(s)	121, 150
BstMCI	CGRYCG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	4 cut(s)	216, 253, 265, 363
BstNI	CCWGG	2 cut(s)	115, 292
BstSCI	CCNGG	2 cut(s)	113, 290
BstV1I	GCAGC	3 cut(s)	197, 243, 344
BstXI	CCANNNNNNTGG	1 cut(s)	102
BtgZI	GCGATG	2 cut(s)	30, 72
Cac8I	GCNNGC	2 cut(s)	51, 152
CaiI	CAGNNNCTG	1 cut(s)	114
Cfr13I	GGNCC	3 cut(s)	80, 117, 288
CseI	GACGC	1 cut(s)	213
CviJI	RGCY	5 cut(s)	22, 71, 111, 219, 357
CviKI_1	RGCY	5 cut(s)	22, 71, 111, 219, 357
DdeI	CTNAG	1 cut(s)	67
EciI	GGCGGA	1 cut(s)	256
Eco47I	GGWCC	3 cut(s)	80, 117, 288
EcoRII	CCWGG	2 cut(s)	113, 290
Esp3I	CGTCTC	2 cut(s)	121, 150
FaiI	YATR	1 cut(s)	278
FaqI	GGGAC	1 cut(s)	172
Fnu4HI	GCNGC	7 cut(s)	208, 211, 257, 260, 358, 361, 364
Fsp4HI	GCNGC	7 cut(s)	208, 211, 257, 260, 358, 361, 364
GluI	GCNGC	7 cut(s)	208, 211, 257, 260, 358, 361, 364
GsaI	CCCAGC	1 cut(s)	75
HapII	CCGG	1 cut(s)	168
HgaI	GACGC	1 cut(s)	213
Hin1I	GRCGYC	1 cut(s)	205
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HindIII	AAGCTT	1 cut(s)	217
HinfI	GANTC	3 cut(s)	63, 122, 327
HpaI	GTTAAC	1 cut(s)	189
HpaII	CCGG	1 cut(s)	168
Hpy166II	GTNNAC	2 cut(s)	139, 189
Hpy188I	TCNGA	3 cut(s)	68, 101, 332
Hpy188III	TCNNGA	1 cut(s)	126
Hpy8I	GTNNAC	2 cut(s)	139, 189
HpyCH4V	TGCA	1 cut(s)	310
HpyF10VI	GCNNNNNNNGC	4 cut(s)	216, 253, 265, 363
HpyF3I	CTNAG	1 cut(s)	67
Hsp92I	GRCGYC	1 cut(s)	205
KspAI	GTTAAC	1 cut(s)	189
LmnI	GCTCC	2 cut(s)	116, 354
LpnPI	CCDG	9 cut(s)	49, 57, 63, 100, 127, 136, 181, 277, 304
Lsp1109I	GCAGC	3 cut(s)	197, 243, 344
MaeIII	GTNAC	1 cut(s)	201
MboII	GAAGA	1 cut(s)	189
MluCI	AATT	1 cut(s)	182
MlyI	GAGTC	1 cut(s)	131
MnlI	CCTC	7 cut(s)	50, 149, 186, 190, 222, 237, 290
MseI	TTAA	1 cut(s)	188
MslI	CAYNNNNRTG	1 cut(s)	100
MspA1I	CMGCKG	1 cut(s)	210
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	2 cut(s)	115, 292
Mva1269I	GAATGC	1 cut(s)	270
MvaI	CCWGG	2 cut(s)	115, 292
MwoI	GCNNNNNNNGC	4 cut(s)	216, 253, 265, 363
NmuCI	GTSAC	1 cut(s)	201
NspV	TTCGAA	1 cut(s)	17
PcsI	WCGNNNNNNNCGW	1 cut(s)	53
PctI	GAATGC	1 cut(s)	270
PfeI	GAWTC	2 cut(s)	63, 327
PflFI	GACNNNGTC	1 cut(s)	121
PfoI	TCCNGGA	1 cut(s)	113
PkrI	GCNGC	7 cut(s)	209, 212, 258, 261, 359, 362, 365
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
Psp6I	CCWGG	2 cut(s)	113, 290
PspFI	CCCAGC	1 cut(s)	71
PspGI	CCWGG	2 cut(s)	113, 290
PspPI	GGNCC	3 cut(s)	80, 117, 288
PstNI	CAGNNNCTG	1 cut(s)	114
PsyI	GACNNNGTC	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	7 cut(s)	208, 211, 257, 260, 358, 361, 364
Sau96I	GGNCC	3 cut(s)	80, 117, 288
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	2 cut(s)	115, 292
SetI	ASST	5 cut(s)	32, 73, 113, 221, 359
SfuI	TTCGAA	1 cut(s)	17
SinI	GGWCC	3 cut(s)	80, 117, 288
SmiMI	CAYNNNNRTG	1 cut(s)	100
SmlI	CTYRAG	1 cut(s)	214
SmoI	CTYRAG	1 cut(s)	214
Sse9I	AATT	1 cut(s)	182
SsiI	CCGC	5 cut(s)	208, 241, 259, 360, 363
StyD4I	CCNGG	2 cut(s)	113, 290
TaqI	TCGA	4 cut(s)	11, 17, 125, 314
TaqII	GACCGA	1 cut(s)	134
TasI	AATT	1 cut(s)	182
TauI	GCSGC	4 cut(s)	210, 262, 363, 366
TfiI	GAWTC	2 cut(s)	63, 327
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TseFI	GTSAC	1 cut(s)	201
TseI	GCWGC	3 cut(s)	210, 256, 357
Tsp45I	GTSAC	1 cut(s)	201
TspDTI	ATGAA	1 cut(s)	265
TspGWI	ACGGA	1 cut(s)	301
Tth111I	GACNNNGTC	1 cut(s)	121
VpaK11BI	GGWCC	3 cut(s)	80, 117, 288
XcmI	CCANNNNNNNNNTGG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.