Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001438

Physical Location & Seq

Genomic Coordinates Forward (+)

30732462 .. 30734306

Gene Structure 1845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1167100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1845 bp

ATGGCGGCGAACCCAGAAAATGACGAAAGGACCCTCCACGACGAACTCTCCCTCCCGATCCTCCTCGCCGATCGCGTCATCAAATCGGCCCAGGAAGCCGAGTCCTCCAAACTCGACTGCGCCGACCTTGCCAAGCAGGTTGACCGCCTCTCCCAAATGCTCCGATCCGCCGTCCGCATCGCCGCCGCCACTCAGTCCCTCTACGATCGCCCAGTCCGCCGAATCGTCGCCGACGTGGCGAAGAACCTTGACCGGGCGCTGACCCTGGTCCGGAAATGCAAGCACAGTGGGGTCCTCCGGCAAGTCTTCTCCATCACCACCACTGCTGATTTCAGAAAAGTGTCGAGCCTTCTGGAGTCTTCGATTGGAGACATGAAGTGGCTTCTCTCGGTGTTTGAGTCTGACGGCGCCAACCTCTCCCTGCCGCCGATCGCCAGCAACGACCCGATACTCAGCTGGGTCTGGTCATACATCGCCACCATTCAAATGGGTCAACTCAGGGACCGAGTCGAGGCGGCTAACTCGCTTGTTTCACTCGCTCGGGACAACGACCGGAACAAGAAGATAATCGTCGACGAAGGCGGCGTGACGCCGCTGCTAAAGCTTCTGAAAGAAGGGTCTTCTCCTGACGCCCAAATCGCCGCCGCCAGTGCTCTGTTTCACATCGCCACTGATCAAGAAAGGGTCCGAATTATAATCGATTTGTTGGGAATTAACGTTGTTGTCTCGGTTTTGGGCGATTCCCCGATGAGGGTTCAGGTGTACGTGGTGAGATTGGTGTCGGAAATGGCGGAGCTTGACACGGTGGCGCAGGAGGTGTTAGGCAGAGAAAATGTGATTAGGCCTTTGGTGTCTCTGCTGGCAATGGACACGGTTCTGGATGATCCGAAGGTGCAATCGGGTAAGCCTAGCATTCATAATCTTGTTCAGATTAATAAGCAGTTAGCTGTAAATGGTTTGAATCCGAATAGCCGTTTGTCTTCCTTTTCGAATCATTATCATTCGGATGGTAGTAGCAGAGGTGGCGGGCATCATCGAAAAGAGAGGGAGAGAGAGGCGGAGTCCAATCCTGAGGTGAAGCTTGAGCTGAAAGCCGGCTGTGCCAAGGCATTGTGGAAACTGTGTAAAGGGTGTTTGTTTAATAGTCGAAAAGTTACAGAGACGAAAGGGTTGATTTGTTTGGCAAAGATTATTGAGAAGGAAGCAGGGGAGTTGCAGCTGAATTGCTTGATGACTGTGATGGAAATAGCTGTGGTGGCAGAGTCCAATCCCGACCTTAGAAGAGCGGCTTTTAAGCCTAATTCTCCAGCAGCAAAGGCAATTTTGGATCAGCTTTTGAGAGTGATTCAGGAAGAGGCTAATCAGGAATTGCAAATTCCTGCCATTAAAGCAATTGGGTCATTGGCAAGAACTTTCCCGGCTAGGGAGACCCGGATAGTTGGTCCTCTGGTTGCCCGGCTTGGCAGTGCGGATGTCGATGTGGCAATTGAGGCTGCCATTGCATTAGGGAAGTTTGTGTGTACAGATAATTTCAATTGCGTGGAGCATTCCAAGACGATTATTGAGTTTGATGGGGTTCCTTCTCTGATGAGATTGTTACGGACAACTGATCGAACTAGTGAACGGGGTCATGTCAATTGTTTAGTACTACTATGCTATCTAGCATCGCATGTTGGCAATAGCAAGGCTCTTGAACAAGCGCGGGCATTGAATACTCTTGAGGGGGGAGCTCGATATCTTGTAGCTCAATATCCCGACTTGAGGGATTTGTTAGCCAAAGCCATACACAATCTCACACTTTATCAGGCTGGAGCTCATCCCCACAGGCAAACCTTCATACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008285 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

615

Amino Acids

67.3

Weight (kDa)

8.2

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7792	PF25055	14 - 132	5.5e-51	Domain of unknown function (DUF7792)
ARM_PUB	PF25598	166 - 291	1.5e-06	Plant U-box protein ARM repeat region
Arm	PF00514	183 - 223	3.1e-06	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26600 AT3G26600
fragaria_vesca	FvH4_4g25480 FvH4_5g06080
malus_domestica	MD06G1167100.v1.1 MD13G1102400.v1.1 MD14G1172700.v1.1 MD16G1102800.v1.1
prunus_persica	Prupe.1G089500_v2.0.a1 Prupe.1G243400_v2.0.a1 Prupe.5G166900_v2.0.a1
pyrus_communis	pycom06g14970 pycom06g14980 pycom13g08950 pycom14g14410 pycom16g08740
rosa_chinensis	RchiOBHm_Chr4g0423211 RchiOBHm_Chr4g0432811 RchiOBHm_Chr7g0192761 RchiOBHm_Chr7g0218041
rosa_laevigata	RLG00000004331 RLG00000006810
rosa_multiflora	Rmu_co8276235.1_g000001 Rmu_sc0001516.1_g000053 Rmu_sc0004101.1_g000049 Rmu_sc0005234.1_g000003 Rmu_sc0008148.1_g000037
rosa_roxburghii	Rroxscaffold_2G00090530 Rroxscaffold_3G00262710 Rroxscaffold_5G00374250 Rroxscaffold_7G00212840
rosa_rugosa	Rorug04G0263100 Rorug07G0004500
rosa_samantha	Rh1AG125500 Rh2AG461900 Rh2CG448900 Rh4AG317200 Rh4AG322300 Rh4BG325400 Rh4CG340300 Rh4DG320600 Rh4DG326400 Rh5BG349900 Rh5CG383400 Rh7AG129500 Rh7AG315400 Rh7BG130800 Rh7CG061100 Rh7CG134200 Rh7DG131700
rosa_wichuraiana	Rw4G027590 Rw7G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	695
Acc36I	ACCTGC	1 cut(s)	127
AccB1I	GGYRCC	1 cut(s)	407
AccBSI	CCGCTC	1 cut(s)	1286
AccI	GTMKAC	1 cut(s)	573
AccII	CGCG	2 cut(s)	75, 1702
AccIII	TCCGGA	1 cut(s)	270
AclI	AACGTT	1 cut(s)	717
AclWI	GGATC	4 cut(s)	52, 159, 878, 1335
AcsI	RAATTY	1 cut(s)	1374
AcyI	GRCGYC	3 cut(s)	408, 590, 630
AfaI	GTAC	3 cut(s)	764, 1522, 1647
AfiI	CCNNNNNNNGG	7 cut(s)	253, 270, 511, 750, 751, 1423, 1761
AgsI	TTSAA	5 cut(s)	485, 961, 1534, 1694, 1711
AhlI	ACTAGT	1 cut(s)	1616
AjiI	CACGTC	1 cut(s)	235
AjnI	CCWGG	2 cut(s)	90, 264
AloI	GAACNNNNNNTCC	2 cut(s)	36, 68
Alw21I	GWGCWC	3 cut(s)	655, 1732, 1816
Alw26I	GTCTC	5 cut(s)	363, 730, 858, 1154, 1421
AlwI	GGATC	4 cut(s)	52, 159, 878, 1335
Ama87I	CYCGRG	1 cut(s)	540
Aor13HI	TCCGGA	1 cut(s)	270
AoxI	GGCC	2 cut(s)	87, 842
ApeKI	GCWGC	4 cut(s)	595, 1216, 1310, 1493
ApoI	RAATTY	1 cut(s)	1374
AseI	ATTAAT	1 cut(s)	933
AspLEI	GCGC	5 cut(s)	122, 259, 410, 811, 1702
AspS9I	GGNCC	7 cut(s)	30, 88, 268, 292, 502, 685, 1442
AsuC2I	CCSGG	4 cut(s)	254, 1418, 1432, 1456
AsuHPI	GGTGA	3 cut(s)	307, 781, 1087
AsuII	TTCGAA	1 cut(s)	989
AvaI	CYCGRG	1 cut(s)	540
AvaII	GGWCC	6 cut(s)	30, 268, 292, 502, 685, 1442
AxyI	CCTNAGG	1 cut(s)	1071
BanI	GGYRCC	1 cut(s)	407
BanII	GRGCYC	2 cut(s)	1732, 1816
BbsI	GAAGAC	4 cut(s)	298, 351, 612, 972
Bbv12I	GWGCWC	3 cut(s)	655, 1732, 1816
BbvI	GCAGC	4 cut(s)	582, 1228, 1322, 1480
BccI	CCATC	4 cut(s)	320, 1001, 1234, 1565
BceAI	ACGGC	3 cut(s)	155, 421, 957
BciT130I	CCWGG	2 cut(s)	92, 266
BclI	TGATCA	1 cut(s)	673
BcnI	CCSGG	4 cut(s)	254, 1418, 1432, 1456
BcoDI	GTCTC	5 cut(s)	363, 730, 858, 1154, 1421
BcuI	ACTAGT	1 cut(s)	1616
BfaI	CTAG	4 cut(s)	909, 1422, 1617, 1661
BfoI	RGCGCY	2 cut(s)	260, 411
BfuAI	ACCTGC	1 cut(s)	127
BglI	GCCNNNNNGGC	1 cut(s)	236
BmcAI	AGTACT	1 cut(s)	1647
Bme1390I	CCNGG	6 cut(s)	92, 254, 266, 1418, 1432, 1456
Bme18I	GGWCC	6 cut(s)	30, 268, 292, 502, 685, 1442
BmeT110I	CYCGRG	1 cut(s)	540
BmgBI	CACGTC	1 cut(s)	235
BmgT120I	GGNCC	7 cut(s)	30, 88, 268, 292, 502, 685, 1442
BmiI	GGNNCC	6 cut(s)	32, 293, 409, 503, 686, 1578
BmrFI	CCNGG	6 cut(s)	92, 254, 266, 1418, 1432, 1456
BmrI	ACTGGG	1 cut(s)	206
BmsI	GCATC	3 cut(s)	186, 1039, 1673
BmuI	ACTGGG	1 cut(s)	206
BoxI	GACNNNNGTC	1 cut(s)	266
BpiI	GAAGAC	4 cut(s)	298, 351, 612, 972
BpmI	CTGGAG	3 cut(s)	374, 1290, 1830
Bpu14I	TTCGAA	1 cut(s)	989
BpuEI	CTTGAG	3 cut(s)	1103, 1739, 1780
BpuMI	CCSGG	4 cut(s)	254, 1418, 1432, 1456
Bsa29I	ATCGAT	1 cut(s)	699
BsaAI	YACGTR	1 cut(s)	766
BsaHI	GRCGYC	3 cut(s)	408, 590, 630
BsaI	GGTCTC	1 cut(s)	1421
BsaJI	CCNNGG	3 cut(s)	90, 264, 1104
BsaWI	WCCGGW	2 cut(s)	270, 552
BsaXI	ACNNNNNCTCC	6 cut(s)	32, 36, 62, 66, 134, 164
Bsc4I	CCNNNNNNNGG	7 cut(s)	253, 270, 511, 750, 751, 1423, 1761
Bse118I	RCCGGY	1 cut(s)	1094
Bse1I	ACTGG	2 cut(s)	212, 648
Bse21I	CCTNAGG	1 cut(s)	1071
Bse3DI	GCAATG	2 cut(s)	870, 1497
BseAI	TCCGGA	1 cut(s)	270
BseBI	CCWGG	2 cut(s)	92, 266
BseCI	ATCGAT	1 cut(s)	699
BseDI	CCNNGG	3 cut(s)	90, 264, 1104
BseGI	GGATG	4 cut(s)	886, 1012, 1477, 1816
BseLI	CCNNNNNNNGG	7 cut(s)	253, 270, 511, 750, 751, 1423, 1761
BseMI	GCAATG	2 cut(s)	870, 1497
BseMII	CTCAG	4 cut(s)	206, 466, 511, 1062
BseNI	ACTGG	2 cut(s)	212, 648
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	4 cut(s)	582, 1228, 1322, 1480
BseYI	CCCAGC	1 cut(s)	456
Bsh1236I	CGCG	2 cut(s)	75, 1702
Bsh1285I	CGRYCG	4 cut(s)	73, 208, 432, 553
BshFI	GGCC	2 cut(s)	89, 844
BshNI	GGYRCC	1 cut(s)	407
BshVI	ATCGAT	1 cut(s)	699
BsiEI	CGRYCG	4 cut(s)	73, 208, 432, 553
BsiHKAI	GWGCWC	3 cut(s)	655, 1732, 1816
BsiHKCI	CYCGRG	1 cut(s)	540
BsiSI	CCGG	8 cut(s)	253, 271, 298, 553, 1095, 1418, 1432, 1456
BslFI	GGGAC	3 cut(s)	181, 515, 557
BslI	CCNNNNNNNGG	7 cut(s)	253, 270, 511, 750, 751, 1423, 1761
BsmAI	GTCTC	5 cut(s)	363, 730, 858, 1154, 1421
BsmBI	CGTCTC	1 cut(s)	1154
BsmFI	GGGAC	3 cut(s)	181, 515, 557
BsmI	GAATGC	2 cut(s)	912, 1546
BsnI	GGCC	2 cut(s)	89, 844
Bso31I	GGTCTC	1 cut(s)	1421
BsoBI	CYCGRG	1 cut(s)	540
Bsp119I	TTCGAA	1 cut(s)	989
Bsp1286I	GDGCHC	3 cut(s)	655, 1732, 1816
Bsp13I	TCCGGA	1 cut(s)	270
Bsp1407I	TGTACA	1 cut(s)	1520
Bsp143I	GATC	9 cut(s)	57, 70, 164, 205, 429, 673, 883, 1327, 1609
BspANI	GGCC	2 cut(s)	89, 844
BspCNI	CTCAG	4 cut(s)	205, 465, 510, 1063
BspDI	ATCGAT	1 cut(s)	699
BspEI	TCCGGA	1 cut(s)	270
BspFNI	CGCG	2 cut(s)	75, 1702
BspLI	GGNNCC	6 cut(s)	32, 293, 409, 503, 686, 1578
BspMI	ACCTGC	1 cut(s)	127
BspPI	GGATC	4 cut(s)	52, 159, 878, 1335
BspQI	GCTCTTC	1 cut(s)	1276
BspT104I	TTCGAA	1 cut(s)	989
BspT107I	GGYRCC	1 cut(s)	407
BspTNI	GGTCTC	1 cut(s)	1421
BsrBI	CCGCTC	1 cut(s)	1286
BsrDI	GCAATG	2 cut(s)	870, 1497
BsrFI	RCCGGY	1 cut(s)	1094
BsrGI	TGTACA	1 cut(s)	1520
BsrI	ACTGG	2 cut(s)	212, 648
BssAI	RCCGGY	1 cut(s)	1094
BssECI	CCNNGG	3 cut(s)	90, 264, 1104
BssMI	GATC	9 cut(s)	57, 70, 164, 205, 429, 673, 883, 1327, 1609
BssNI	GRCGYC	3 cut(s)	408, 590, 630
BssT1I	CCWWGG	1 cut(s)	1104
Bst2UI	CCWGG	2 cut(s)	92, 266
Bst4CI	ACNGT	6 cut(s)	287, 805, 874, 1122, 1237, 1842
Bst6I	CTCTTC	2 cut(s)	1276, 1347
BstACI	GRCGYC	3 cut(s)	408, 590, 630
BstAUI	TGTACA	1 cut(s)	1520
BstBAI	YACGTR	1 cut(s)	766
BstBI	TTCGAA	1 cut(s)	989
BstC8I	GCNNGC	6 cut(s)	281, 436, 861, 1028, 1096, 1704
BstDEI	CTNAG	5 cut(s)	192, 452, 497, 1071, 1277
BstF5I	GGATG	4 cut(s)	886, 1012, 1477, 1816
BstFNI	CGCG	2 cut(s)	75, 1702
BstH2I	RGCGCY	2 cut(s)	260, 411
BstHHI	GCGC	5 cut(s)	122, 259, 410, 811, 1702
BstKTI	GATC	9 cut(s)	60, 73, 167, 208, 432, 676, 886, 1330, 1612
BstMAI	GTCTC	5 cut(s)	363, 730, 858, 1154, 1421
BstMBI	GATC	9 cut(s)	57, 70, 164, 205, 429, 673, 883, 1327, 1609
BstMCI	CGRYCG	4 cut(s)	73, 208, 432, 553
BstNI	CCWGG	2 cut(s)	92, 266
BstNSI	RCATGY	1 cut(s)	1673
BstPAI	GACNNNNGTC	1 cut(s)	266
BstSCI	CCNGG	6 cut(s)	90, 252, 264, 1416, 1430, 1454
BstUI	CGCG	2 cut(s)	75, 1702
BstV1I	GCAGC	4 cut(s)	582, 1228, 1322, 1480
BstV2I	GAAGAC	4 cut(s)	298, 351, 612, 972
BstXI	CCANNNNNNTGG	1 cut(s)	487
Bsu15I	ATCGAT	1 cut(s)	699
Bsu36I	CCTNAGG	1 cut(s)	1071
BsuRI	GGCC	2 cut(s)	89, 844
BsuTUI	ATCGAT	1 cut(s)	699
BtgZI	GCGATG	4 cut(s)	163, 457, 649, 1650
BtrI	CACGTC	1 cut(s)	235
BtsCI	GGATG	4 cut(s)	886, 1012, 1477, 1816
BtsI	GCAGTG	2 cut(s)	321, 1471
BtsIMutI	CAGTG	5 cut(s)	292, 321, 655, 669, 1471
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	6 cut(s)	281, 436, 861, 1028, 1096, 1704
CfoI	GCGC	5 cut(s)	122, 259, 410, 811, 1702
Cfr10I	RCCGGY	1 cut(s)	1094
Cfr13I	GGNCC	7 cut(s)	30, 88, 268, 292, 502, 685, 1442
ClaI	ATCGAT	1 cut(s)	699
CseI	GACGC	3 cut(s)	64, 598, 638
Csp6I	GTAC	3 cut(s)	763, 1521, 1646
CspCI	CAANNNNNGTGG	2 cut(s)	268, 303
CviAII	CATG	3 cut(s)	373, 1631, 1670
CviQI	GTAC	3 cut(s)	763, 1521, 1646
DdeI	CTNAG	5 cut(s)	192, 452, 497, 1071, 1277
DinI	GGCGCC	1 cut(s)	409
DpnI	GATC	9 cut(s)	59, 72, 166, 207, 431, 675, 885, 1329, 1611
DpnII	GATC	9 cut(s)	57, 70, 164, 205, 429, 673, 883, 1327, 1609
Eam1104I	CTCTTC	2 cut(s)	1276, 1347
EarI	CTCTTC	2 cut(s)	1276, 1347
EciI	GGCGGA	4 cut(s)	157, 206, 806, 1073
Ecl136II	GAGCTC	2 cut(s)	1730, 1814
Eco130I	CCWWGG	1 cut(s)	1104
Eco147I	AGGCCT	1 cut(s)	844
Eco24I	GRGCYC	2 cut(s)	1732, 1816
Eco31I	GGTCTC	1 cut(s)	1421
Eco32I	GATATC	1 cut(s)	1736
Eco47I	GGWCC	6 cut(s)	30, 268, 292, 502, 685, 1442
Eco53kI	GAGCTC	2 cut(s)	1730, 1814
Eco81I	CCTNAGG	1 cut(s)	1071
Eco88I	CYCGRG	1 cut(s)	540
EcoICRI	GAGCTC	2 cut(s)	1730, 1814
EcoO109I	RGGNCCY	2 cut(s)	30, 292
EcoRII	CCWGG	2 cut(s)	90, 264
EcoRV	GATATC	1 cut(s)	1736
EcoT14I	CCWWGG	1 cut(s)	1104
EcoT38I	GRGCYC	2 cut(s)	1732, 1816
EgeI	GGCGCC	1 cut(s)	409
EheI	GGCGCC	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	1104
Esp3I	CGTCTC	1 cut(s)	1154
FaeI	CATG	3 cut(s)	376, 1634, 1673
FaiI	YATR	9 cut(s)	374, 469, 695, 918, 1632, 1654, 1671, 1784, 1838
FalI	AAGNNNNNCTT	2 cut(s)	1273, 1305
FaqI	GGGAC	3 cut(s)	181, 515, 557
FatI	CATG	3 cut(s)	372, 1630, 1669
FauI	CCCGC	2 cut(s)	1019, 1695
FbaI	TGATCA	1 cut(s)	673
FblI	GTMKAC	1 cut(s)	573
FokI	GGATG	4 cut(s)	893, 1019, 1484, 1803
FriOI	GRGCYC	2 cut(s)	1732, 1816
FspBI	CTAG	4 cut(s)	909, 1422, 1617, 1661
GlaI	GCGC	5 cut(s)	121, 258, 409, 810, 1701
GsaI	CCCAGC	1 cut(s)	460
GsuI	CTGGAG	3 cut(s)	374, 1290, 1830
HaeII	RGCGCY	2 cut(s)	260, 411
HaeIII	GGCC	2 cut(s)	89, 844
HapII	CCGG	8 cut(s)	253, 271, 298, 553, 1095, 1418, 1432, 1456
HgaI	GACGC	3 cut(s)	64, 598, 638
HhaI	GCGC	5 cut(s)	122, 259, 410, 811, 1702
Hin1I	GRCGYC	3 cut(s)	408, 590, 630
Hin1II	CATG	3 cut(s)	376, 1634, 1673
Hin6I	GCGC	5 cut(s)	120, 257, 408, 809, 1700
HinP1I	GCGC	5 cut(s)	120, 257, 408, 809, 1700
HincII	GTYRAC	3 cut(s)	142, 494, 574
HindII	GTYRAC	3 cut(s)	142, 494, 574
HindIII	AAGCTT	2 cut(s)	602, 1079
HpaII	CCGG	8 cut(s)	253, 271, 298, 553, 1095, 1418, 1432, 1456
HphI	GGTGA	3 cut(s)	307, 781, 1087
Hpy166II	GTNNAC	6 cut(s)	142, 494, 574, 763, 1521, 1622
Hpy8I	GTNNAC	6 cut(s)	142, 494, 574, 763, 1521, 1622
Hpy99I	CGWCG	5 cut(s)	44, 230, 236, 575, 578
HpyAV	CCTTC	7 cut(s)	359, 572, 608, 883, 1192, 1590, 1843
HpyCH4III	ACNGT	6 cut(s)	287, 805, 874, 1122, 1237, 1842
HpyCH4IV	ACGT	3 cut(s)	234, 717, 765
HpyCH4V	TGCA	5 cut(s)	279, 895, 1216, 1372, 1502
HpyF3I	CTNAG	5 cut(s)	192, 452, 497, 1071, 1277
HpySE526I	ACGT	3 cut(s)	234, 717, 765
Hsp92I	GRCGYC	3 cut(s)	408, 590, 630
Hsp92II	CATG	3 cut(s)	376, 1634, 1673
HspAI	GCGC	5 cut(s)	120, 257, 408, 809, 1700
KasI	GGCGCC	1 cut(s)	407
Kpn2I	TCCGGA	1 cut(s)	270
KroI	GCCGGC	1 cut(s)	1094
KroNI	GCCGGC	1 cut(s)	1096
Ksp22I	TGATCA	1 cut(s)	673
Kzo9I	GATC	9 cut(s)	57, 70, 164, 205, 429, 673, 883, 1327, 1609
LguI	GCTCTTC	1 cut(s)	1276
LmnI	GCTCC	5 cut(s)	165, 793, 1543, 1727, 1811
Lsp1109I	GCAGC	4 cut(s)	582, 1228, 1322, 1480
LweI	GCATC	3 cut(s)	186, 1039, 1673
MaeI	CTAG	4 cut(s)	909, 1422, 1617, 1661
MaeII	ACGT	3 cut(s)	234, 717, 765
MaeIII	GTNAC	3 cut(s)	586, 1153, 1596
MalI	GATC	9 cut(s)	59, 72, 166, 207, 431, 675, 885, 1329, 1611
MbiI	CCGCTC	1 cut(s)	1286
MboI	GATC	9 cut(s)	57, 70, 164, 205, 429, 673, 883, 1327, 1609
MboII	GAAGA	8 cut(s)	253, 298, 351, 574, 612, 972, 1293, 1364
MfeI	CAATTG	4 cut(s)	1392, 1485, 1534, 1636
MhlI	GDGCHC	3 cut(s)	655, 1732, 1816
Mly113I	GGCGCC	1 cut(s)	408
MlyI	GAGTC	6 cut(s)	110, 365, 407, 516, 1070, 1271
MmeI	TCCRAC	1 cut(s)	762
MroI	TCCGGA	1 cut(s)	270
MroNI	GCCGGC	1 cut(s)	1094
MseI	TTAA	5 cut(s)	714, 933, 1140, 1293, 1386
MslI	CAYNNNNRTG	2 cut(s)	485, 1005
MspA1I	CMGCKG	3 cut(s)	456, 595, 1219
MspI	CCGG	8 cut(s)	253, 271, 298, 553, 1095, 1418, 1432, 1456
MspR9I	CCNGG	6 cut(s)	92, 254, 266, 1418, 1432, 1456
MunI	CAATTG	4 cut(s)	1392, 1485, 1534, 1636
Mva1269I	GAATGC	2 cut(s)	912, 1546
MvaI	CCWGG	2 cut(s)	92, 266
MvnI	CGCG	2 cut(s)	75, 1702
NaeI	GCCGGC	1 cut(s)	1096
NarI	GGCGCC	1 cut(s)	408
NciI	CCSGG	4 cut(s)	254, 1418, 1432, 1456
NdeII	GATC	9 cut(s)	57, 70, 164, 205, 429, 673, 883, 1327, 1609
NgoMIV	GCCGGC	1 cut(s)	1094
NlaIII	CATG	3 cut(s)	376, 1634, 1673
NlaIV	GGNNCC	6 cut(s)	32, 293, 409, 503, 686, 1578
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	586
NspI	RCATGY	1 cut(s)	1673
NspV	TTCGAA	1 cut(s)	989
PceI	AGGCCT	1 cut(s)	844
PciSI	GCTCTTC	1 cut(s)	1276
PcsI	WCGNNNNNNNCGW	5 cut(s)	72, 120, 231, 438, 582
PctI	GAATGC	2 cut(s)	912, 1546
PdiI	GCCGGC	1 cut(s)	1096
PfeI	GAWTC	5 cut(s)	222, 740, 961, 991, 1345
PflFI	GACNNNGTC	1 cut(s)	506
Ple19I	CGATCG	3 cut(s)	73, 208, 432
PleI	GAGTC	6 cut(s)	109, 364, 406, 515, 1069, 1270
PluTI	GGCGCC	1 cut(s)	411
PpsI	GAGTC	6 cut(s)	109, 364, 406, 515, 1069, 1270
Ppu21I	YACGTR	1 cut(s)	766
PpuMI	RGGWCCY	2 cut(s)	30, 292
PshAI	GACNNNNGTC	1 cut(s)	266
PshBI	ATTAAT	1 cut(s)	933
PsiI	TTATAA	1 cut(s)	695
Psp124BI	GAGCTC	2 cut(s)	1732, 1816
Psp1406I	AACGTT	1 cut(s)	717
Psp5II	RGGWCCY	2 cut(s)	30, 292
Psp6I	CCWGG	2 cut(s)	90, 264
PspFI	CCCAGC	1 cut(s)	456
PspGI	CCWGG	2 cut(s)	90, 264
PspN4I	GGNNCC	6 cut(s)	32, 293, 409, 503, 686, 1578
PspPI	GGNCC	7 cut(s)	30, 88, 268, 292, 502, 685, 1442
PspPPI	RGGWCCY	2 cut(s)	30, 292
PsyI	GACNNNGTC	1 cut(s)	506
PvuI	CGATCG	3 cut(s)	73, 208, 432
PvuII	CAGCTG	2 cut(s)	456, 1219
RsaI	GTAC	3 cut(s)	764, 1522, 1647
RsaNI	GTAC	3 cut(s)	763, 1521, 1646
RseI	CAYNNNNRTG	2 cut(s)	485, 1005
SacI	GAGCTC	2 cut(s)	1732, 1816
SalI	GTCGAC	1 cut(s)	572
SapI	GCTCTTC	1 cut(s)	1276
SaqAI	TTAA	5 cut(s)	714, 933, 1140, 1293, 1386
Sau3AI	GATC	9 cut(s)	57, 70, 164, 205, 429, 673, 883, 1327, 1609
Sau96I	GGNCC	7 cut(s)	30, 88, 268, 292, 502, 685, 1442
ScaI	AGTACT	1 cut(s)	1647
SchI	GAGTC	6 cut(s)	110, 365, 407, 516, 1070, 1271
ScrFI	CCNGG	6 cut(s)	92, 254, 266, 1418, 1432, 1456
SduI	GDGCHC	3 cut(s)	655, 1732, 1816
SfaNI	GCATC	3 cut(s)	186, 1039, 1673
SfoI	GGCGCC	1 cut(s)	409
SfuI	TTCGAA	1 cut(s)	989
SgrDI	CGTCGACG	1 cut(s)	572
SinI	GGWCC	6 cut(s)	30, 268, 292, 502, 685, 1442
SmiMI	CAYNNNNRTG	2 cut(s)	485, 1005
SmlI	CTYRAG	3 cut(s)	1082, 1718, 1759
SmoI	CTYRAG	3 cut(s)	1082, 1718, 1759
SpeI	ACTAGT	1 cut(s)	1616
SseBI	AGGCCT	1 cut(s)	844
SspDI	GGCGCC	1 cut(s)	407
SspMI	CTAG	4 cut(s)	909, 1422, 1617, 1661
SstI	GAGCTC	2 cut(s)	1732, 1816
StuI	AGGCCT	1 cut(s)	844
StyD4I	CCNGG	6 cut(s)	90, 252, 264, 1416, 1430, 1454
StyI	CCWWGG	1 cut(s)	1104
TaaI	ACNGT	6 cut(s)	287, 805, 874, 1122, 1237, 1842
TaiI	ACGT	3 cut(s)	237, 720, 768
TaqII	GACCGA	1 cut(s)	519
TatI	WGTACW	2 cut(s)	1520, 1645
TfiI	GAWTC	5 cut(s)	222, 740, 961, 991, 1345
Tru1I	TTAA	5 cut(s)	714, 933, 1140, 1293, 1386
Tru9I	TTAA	5 cut(s)	714, 933, 1140, 1293, 1386
TscAI	CASTG	5 cut(s)	292, 328, 655, 676, 1471
TseFI	GTSAC	1 cut(s)	586
TseI	GCWGC	4 cut(s)	595, 1216, 1310, 1493
Tsp45I	GTSAC	1 cut(s)	586
TspDTI	ATGAA	3 cut(s)	389, 905, 1825
TspGWI	ACGGA	1 cut(s)	1615
TspRI	CASTG	5 cut(s)	292, 328, 655, 676, 1471
Tth111I	GACNNNGTC	1 cut(s)	506
VpaK11BI	GGWCC	6 cut(s)	30, 268, 292, 502, 685, 1442
VspI	ATTAAT	1 cut(s)	933
XapI	RAATTY	1 cut(s)	1374
XceI	RCATGY	1 cut(s)	1673
XcmI	CCANNNNNNNNNTGG	1 cut(s)	484
XmiI	GTMKAC	1 cut(s)	573
XspI	CTAG	4 cut(s)	909, 1422, 1617, 1661
ZrmI	AGTACT	1 cut(s)	1647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.