pycom13g08950

Armadillo repeat only

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0001438
Physical Location & Seq
Forward (+)
5985222 .. 5985982
761 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g08950.2

Sequence Viewer

Length: 699 bp
ATGGGTCAGCTGCCGTATCGTATCGAGGCCGCCAATGAGCTCGCCTCGCTGGCGCAGGACAACGACCGGAACAAGAAGATTATTGTCGACGAAGGCGGAGTCTCGCCGCTACTGAAATTGTTGAAAGAGGGCTCGTCGCCGGATGCCCAAATTGCGGCGGCGACGGCGCTCTATAATCTGGCGGGCGATCAGGAGAAGGTGAGGACTATTGTGAATGAGGTTGGGGTGCCGATTATTGTGCAGGTTCTGGGCGACTCGCCGATGAGGGTTCAGAGCCGTGTGGCGACCCTGGTGGCGCGGATGGCGGAGCATGACAGCATTGCCCAGGAGGATTTCGCCAGGGAGAATGTGATCAGGCCGCTGGTGACGCTACTGTCGTTCGAGACGTTTGGGGAGGATCAGAATAATGATCAATTGGGTAAGCAAAGCATTCATTCTCTGATTCAGATTAATAGGGAAATGGAGAAGAGCACATCAGCAAAACCGCAATCGAGAGGCAGTAGCAGTGACAGTCTATATAGACCTTATTCGAATACGTATTCAAGTTCTTCGTATTCTTATTATTCGGAGGGTAGTAGCCGAGGCGGGCATTACAGGAAGGAGAGGGAGAATGAGAAACCTCATGTAAAGCTTCAGCTGAAAATTAGTTGCGGCGCGGCGTTGTGGATGCTTGCCAGGGGCAGTGTTTTGAATAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

233

Amino Acids

25.63

Weight (kDa)

6.92

Isoelectric Point (pI)

42.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 373
Acc36I ACCTGC 1 cut(s) 232
AccB1I GGYRCC 1 cut(s) 226
AccI GTMKAC 1 cut(s) 87
AccII CGCG 2 cut(s) 298, 656
AclWI GGATC 1 cut(s) 405
AcuI CTGAAG 1 cut(s) 617
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 3 cut(s) 124, 543, 691
AjnI CCWGG 4 cut(s) 288, 324, 338, 674
AluBI AGCT 4 cut(s) 10, 40, 631, 637
AluI AGCT 4 cut(s) 10, 40, 631, 637
Alw21I GWGCWC 2 cut(s) 42, 473
Alw26I GTCTC 2 cut(s) 106, 377
AlwI GGATC 1 cut(s) 405
AlwNI CAGNNNCTG 1 cut(s) 247
AoxI GGCC 2 cut(s) 27, 356
ApeKI GCWGC 1 cut(s) 10
ArsI GACNNNNNNTTYG 2 cut(s) 84, 116
AseI ATTAAT 1 cut(s) 450
AspLEI GCGC 4 cut(s) 55, 169, 298, 656
AsuHPI GGTGA 2 cut(s) 211, 376
AsuII TTCGAA 1 cut(s) 530
BanI GGYRCC 1 cut(s) 226
BanII GRGCYC 2 cut(s) 42, 134
Bbv12I GWGCWC 2 cut(s) 42, 473
BccI CCATC 1 cut(s) 295
BceAI ACGGC 2 cut(s) 180, 261
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BciT130I CCWGG 4 cut(s) 290, 326, 340, 676
BclI TGATCA 2 cut(s) 351, 409
BcoDI GTCTC 2 cut(s) 106, 377
BfoI RGCGCY 1 cut(s) 170
BfuAI ACCTGC 1 cut(s) 232
BglI GCCNNNNNGGC 1 cut(s) 50
BisI GCNGC 8 cut(s) 11, 30, 107, 156, 159, 359, 652, 657
BlsI GCNGC 8 cut(s) 12, 31, 108, 157, 160, 360, 653, 658
Bme1390I CCNGG 4 cut(s) 290, 326, 340, 676
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 4 cut(s) 290, 326, 340, 676
BmsI GCATC 2 cut(s) 133, 657
BplI GAGNNNNNCTC 2 cut(s) 29, 61
Bpu14I TTCGAA 1 cut(s) 530
BsaAI YACGTR 1 cut(s) 537
BsaJI CCNNGG 5 cut(s) 288, 324, 339, 580, 675
BsaWI WCCGGW 1 cut(s) 66
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse3DI GCAATG 1 cut(s) 318
BseBI CCWGG 4 cut(s) 290, 326, 340, 676
BseDI CCNNGG 5 cut(s) 288, 324, 339, 580, 675
BseGI GGATG 3 cut(s) 148, 306, 672
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMI GCAATG 1 cut(s) 318
BsgI GTGCAG 1 cut(s) 260
Bsh1236I CGCG 2 cut(s) 298, 656
Bsh1285I CGRYCG 1 cut(s) 67
BshFI GGCC 2 cut(s) 29, 358
BshNI GGYRCC 1 cut(s) 226
BsiEI CGRYCG 1 cut(s) 67
BsiHKAI GWGCWC 2 cut(s) 42, 473
BsiSI CCGG 2 cut(s) 67, 140
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 2 cut(s) 106, 377
BsmBI CGTCTC 1 cut(s) 377
BsmI GAATGC 1 cut(s) 429
BsnI GGCC 2 cut(s) 29, 358
Bsp119I TTCGAA 1 cut(s) 530
Bsp1286I GDGCHC 3 cut(s) 42, 134, 473
Bsp143I GATC 4 cut(s) 187, 351, 397, 409
BspANI GGCC 2 cut(s) 29, 358
BspFNI CGCG 2 cut(s) 298, 656
BspLI GGNNCC 1 cut(s) 228
BspMI ACCTGC 1 cut(s) 232
BspPI GGATC 1 cut(s) 405
BspQI GCTCTTC 1 cut(s) 461
BspT104I TTCGAA 1 cut(s) 530
BspT107I GGYRCC 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 318
BssECI CCNNGG 5 cut(s) 288, 324, 339, 580, 675
BssMI GATC 4 cut(s) 187, 351, 397, 409
Bst2UI CCWGG 4 cut(s) 290, 326, 340, 676
Bst4CI ACNGT 2 cut(s) 375, 512
Bst6I CTCTTC 1 cut(s) 461
BstBAI YACGTR 1 cut(s) 537
BstBI TTCGAA 1 cut(s) 530
BstC8I GCNNGC 5 cut(s) 42, 51, 184, 587, 672
BstF5I GGATG 3 cut(s) 148, 306, 672
BstFNI CGCG 2 cut(s) 298, 656
BstH2I RGCGCY 1 cut(s) 170
BstHHI GCGC 4 cut(s) 55, 169, 298, 656
BstKTI GATC 4 cut(s) 190, 354, 400, 412
BstMAI GTCTC 2 cut(s) 106, 377
BstMBI GATC 4 cut(s) 187, 351, 397, 409
BstMCI CGRYCG 1 cut(s) 67
BstMWI GCNNNNNNNGC 6 cut(s) 46, 50, 152, 164, 302, 367
BstNI CCWGG 4 cut(s) 290, 326, 340, 676
BstSCI CCNGG 4 cut(s) 288, 324, 338, 674
BstSNI TACGTA 1 cut(s) 537
BstUI CGCG 2 cut(s) 298, 656
BsuRI GGCC 2 cut(s) 29, 358
BtsCI GGATG 3 cut(s) 148, 306, 672
BtsI GCAGTG 2 cut(s) 511, 688
BtsIMutI CAGTG 2 cut(s) 511, 688
BveI ACCTGC 1 cut(s) 232
Cac8I GCNNGC 5 cut(s) 42, 51, 184, 587, 672
CaiI CAGNNNCTG 1 cut(s) 247
CfoI GCGC 4 cut(s) 55, 169, 298, 656
CseI GACGC 1 cut(s) 376
CviAII CATG 2 cut(s) 311, 623
CviJI RGCY 9 cut(s) 10, 29, 40, 132, 276, 358, 579, 631, 637
CviKI_1 RGCY 9 cut(s) 10, 29, 40, 132, 276, 358, 579, 631, 637
DpnI GATC 4 cut(s) 189, 353, 399, 411
DpnII GATC 4 cut(s) 187, 351, 397, 409
DrdI GACNNNNNNGTC 1 cut(s) 373
DseDI GACNNNNNNGTC 1 cut(s) 373
Eam1104I CTCTTC 1 cut(s) 461
EarI CTCTTC 1 cut(s) 461
EciI GGCGGA 2 cut(s) 111, 320
Ecl136II GAGCTC 1 cut(s) 40
Eco105I TACGTA 1 cut(s) 537
Eco24I GRGCYC 2 cut(s) 42, 134
Eco53kI GAGCTC 1 cut(s) 40
Eco57I CTGAAG 1 cut(s) 617
EcoICRI GAGCTC 1 cut(s) 40
EcoRII CCWGG 4 cut(s) 288, 324, 338, 674
EcoT38I GRGCYC 2 cut(s) 42, 134
Esp3I CGTCTC 1 cut(s) 377
FaeI CATG 2 cut(s) 314, 626
FaiI YATR 5 cut(s) 174, 312, 517, 519, 624
FatI CATG 2 cut(s) 310, 622
FauI CCCGC 2 cut(s) 175, 578
FbaI TGATCA 2 cut(s) 351, 409
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 8 cut(s) 11, 30, 107, 156, 159, 359, 652, 657
FokI GGATG 3 cut(s) 155, 313, 679
FriOI GRGCYC 2 cut(s) 42, 134
Fsp4HI GCNGC 8 cut(s) 11, 30, 107, 156, 159, 359, 652, 657
GlaI GCGC 4 cut(s) 54, 168, 297, 655
GluI GCNGC 8 cut(s) 11, 30, 107, 156, 159, 359, 652, 657
HaeII RGCGCY 1 cut(s) 170
HaeIII GGCC 2 cut(s) 29, 358
HapII CCGG 2 cut(s) 67, 140
HgaI GACGC 1 cut(s) 376
HhaI GCGC 4 cut(s) 55, 169, 298, 656
Hin1II CATG 2 cut(s) 314, 626
Hin6I GCGC 4 cut(s) 53, 167, 296, 654
HinP1I GCGC 4 cut(s) 53, 167, 296, 654
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 629
HinfI GANTC 3 cut(s) 99, 254, 442
HpaII CCGG 2 cut(s) 67, 140
HphI GGTGA 2 cut(s) 211, 376
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 5 cut(s) 273, 402, 441, 447, 568
Hpy188III TCNNGA 3 cut(s) 191, 382, 492
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 3 cut(s) 92, 139, 166
HpyAV CCTTC 3 cut(s) 86, 190, 592
HpyCH4III ACNGT 2 cut(s) 375, 512
HpyCH4IV ACGT 2 cut(s) 386, 536
HpyCH4V TGCA 1 cut(s) 241
HpyF10VI GCNNNNNNNGC 6 cut(s) 46, 50, 152, 164, 302, 367
HpySE526I ACGT 2 cut(s) 386, 536
Hsp92II CATG 2 cut(s) 314, 626
HspAI GCGC 4 cut(s) 53, 167, 296, 654
Ksp22I TGATCA 2 cut(s) 351, 409
Kzo9I GATC 4 cut(s) 187, 351, 397, 409
LguI GCTCTTC 1 cut(s) 461
LmnI GCTCC 1 cut(s) 307
LweI GCATC 2 cut(s) 133, 657
MaeII ACGT 2 cut(s) 386, 536
MaeIII GTNAC 2 cut(s) 364, 506
MalI GATC 4 cut(s) 189, 353, 399, 411
MboI GATC 4 cut(s) 187, 351, 397, 409
MboII GAAGA 3 cut(s) 88, 478, 540
MfeI CAATTG 1 cut(s) 413
MhlI GDGCHC 3 cut(s) 42, 134, 473
MluCI AATT 4 cut(s) 116, 150, 413, 642
MlyI GAGTC 2 cut(s) 108, 248
MseI TTAA 1 cut(s) 450
MspA1I CMGCKG 3 cut(s) 10, 361, 637
MspI CCGG 2 cut(s) 67, 140
MspR9I CCNGG 4 cut(s) 290, 326, 340, 676
MunI CAATTG 1 cut(s) 413
Mva1269I GAATGC 1 cut(s) 429
MvaI CCWGG 4 cut(s) 290, 326, 340, 676
MvnI CGCG 2 cut(s) 298, 656
MwoI GCNNNNNNNGC 6 cut(s) 46, 50, 152, 164, 302, 367
NdeII GATC 4 cut(s) 187, 351, 397, 409
NlaIII CATG 2 cut(s) 314, 626
NlaIV GGNNCC 1 cut(s) 228
NmeAIII GCCGAG 1 cut(s) 605
NmuCI GTSAC 2 cut(s) 364, 506
NspV TTCGAA 1 cut(s) 530
PciSI GCTCTTC 1 cut(s) 461
PcsI WCGNNNNNNNCGW 2 cut(s) 374, 383
PctI GAATGC 1 cut(s) 429
PfeI GAWTC 1 cut(s) 442
PkrI GCNGC 8 cut(s) 12, 31, 108, 157, 160, 360, 653, 658
PleI GAGTC 2 cut(s) 107, 248
PpsI GAGTC 2 cut(s) 107, 248
Ppu21I YACGTR 1 cut(s) 537
PshBI ATTAAT 1 cut(s) 450
Psp124BI GAGCTC 1 cut(s) 42
Psp6I CCWGG 4 cut(s) 288, 324, 338, 674
PspGI CCWGG 4 cut(s) 288, 324, 338, 674
PspN4I GGNNCC 1 cut(s) 228
PstNI CAGNNNCTG 1 cut(s) 247
PvuII CAGCTG 2 cut(s) 10, 637
SacI GAGCTC 1 cut(s) 42
SalI GTCGAC 1 cut(s) 86
SapI GCTCTTC 1 cut(s) 461
SaqAI TTAA 1 cut(s) 450
SatI GCNGC 8 cut(s) 11, 30, 107, 156, 159, 359, 652, 657
Sau3AI GATC 4 cut(s) 187, 351, 397, 409
SchI GAGTC 2 cut(s) 108, 248
ScrFI CCNGG 4 cut(s) 290, 326, 340, 676
SduI GDGCHC 3 cut(s) 42, 134, 473
SfaNI GCATC 2 cut(s) 133, 657
SfuI TTCGAA 1 cut(s) 530
SnaBI TACGTA 1 cut(s) 537
Sse9I AATT 4 cut(s) 116, 150, 413, 642
SstI GAGCTC 1 cut(s) 42
StyD4I CCNGG 4 cut(s) 288, 324, 338, 674
TaaI ACNGT 2 cut(s) 375, 512
TaiI ACGT 2 cut(s) 389, 539
TaqI TCGA 5 cut(s) 24, 87, 381, 491, 530
TasI AATT 4 cut(s) 116, 150, 413, 642
TauI GCSGC 7 cut(s) 32, 109, 158, 161, 361, 654, 659
TfiI GAWTC 1 cut(s) 442
Tru1I TTAA 1 cut(s) 450
Tru9I TTAA 1 cut(s) 450
TscAI CASTG 2 cut(s) 511, 688
TseFI GTSAC 2 cut(s) 364, 506
TseI GCWGC 1 cut(s) 10
Tsp45I GTSAC 2 cut(s) 364, 506
TspDTI ATGAA 1 cut(s) 422
TspRI CASTG 2 cut(s) 511, 688
VspI ATTAAT 1 cut(s) 450
XmiI GTMKAC 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.