Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001438

Physical Location & Seq

Genomic Coordinates Forward (+)

67929799 .. 67930155

Gene Structure 357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG461900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGACAATGAGCGCCTAGTCCGACTCATCGCCGCCGACGTGGCCAAGAACCTCGACCGCGCTCTCACCCTCGTCCGCAAGTGCAAGCACAGCGGCATCCTCCGCCAGGTCTTCTCCATCACCACCATCGCCGACTTCTGCAAGGTGTCCAACCTCCTCGAGTCCTCCATCGGCGACATGAAGTGGCTCCTCTCCGTCTTCGAGTCTGATAGTGCCAACCTCTCCCTGTCTCCCATCACCAGCAACGACCCGATTCTGAGCTGGGTCTGGTCCTACATCGCCACTGTAGGAGATAGCTTAATCACCAGCCTGAAAAGTATGGCCGCCTCTAACCGCACTAAAAAGCTCGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008285 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

118

Amino Acids

13.02

Weight (kDa)

8.66

Isoelectric Point (pI)

22.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7792	PF25055	4 - 67	8e-25	Domain of unknown function (DUF7792)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26600 AT3G26600
fragaria_vesca	FvH4_4g25480 FvH4_5g06080
malus_domestica	MD06G1167100.v1.1 MD13G1102400.v1.1 MD14G1172700.v1.1 MD16G1102800.v1.1
prunus_persica	Prupe.1G089500_v2.0.a1 Prupe.1G243400_v2.0.a1 Prupe.5G166900_v2.0.a1
pyrus_communis	pycom06g14970 pycom06g14980 pycom13g08950 pycom14g14410 pycom16g08740
rosa_chinensis	RchiOBHm_Chr4g0423211 RchiOBHm_Chr4g0432811 RchiOBHm_Chr7g0192761 RchiOBHm_Chr7g0218041
rosa_laevigata	RLG00000004331 RLG00000006810
rosa_multiflora	Rmu_co8276235.1_g000001 Rmu_sc0001516.1_g000053 Rmu_sc0004101.1_g000049 Rmu_sc0005234.1_g000003 Rmu_sc0008148.1_g000037
rosa_roxburghii	Rroxscaffold_2G00090530 Rroxscaffold_3G00262710 Rroxscaffold_5G00374250 Rroxscaffold_7G00212840
rosa_rugosa	Rorug04G0263100 Rorug07G0004500
rosa_samantha	Rh1AG125500 Rh2AG461900 Rh2CG448900 Rh4AG317200 Rh4AG322300 Rh4BG325400 Rh4CG340300 Rh4DG320600 Rh4DG326400 Rh5BG349900 Rh5CG383400 Rh7AG129500 Rh7AG315400 Rh7BG130800 Rh7CG061100 Rh7CG134200 Rh7DG131700
rosa_wichuraiana	Rw4G027590 Rw7G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	60
AciI	CCGC	7 cut(s)	33, 58, 76, 93, 103, 324, 334
AcoI	YGGCCR	2 cut(s)	42, 321
AfiI	CCNNNNNNNGG	1 cut(s)	106
AjiI	CACGTC	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	105
AluBI	AGCT	4 cut(s)	261, 297, 346, 353
AluI	AGCT	4 cut(s)	261, 297, 346, 353
Alw26I	GTCTC	1 cut(s)	234
Ama87I	CYCGRG	1 cut(s)	158
AoxI	GGCC	2 cut(s)	42, 321
AspLEI	GCGC	2 cut(s)	15, 62
AspS9I	GGNCC	1 cut(s)	270
AsuHPI	GGTGA	4 cut(s)	58, 112, 229, 295
AvaI	CYCGRG	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	270
BalI	TGGCCA	1 cut(s)	44
BbsI	GAAGAC	2 cut(s)	103, 190
BccI	CCATC	4 cut(s)	125, 134, 176, 242
BciT130I	CCWGG	1 cut(s)	107
BcoDI	GTCTC	1 cut(s)	234
BfaI	CTAG	1 cut(s)	17
BfmI	CTRYAG	1 cut(s)	285
BfoI	RGCGCY	1 cut(s)	16
BglI	GCCNNNNNGGC	1 cut(s)	41
BisI	GCNGC	3 cut(s)	33, 94, 324
BlsI	GCNGC	3 cut(s)	34, 95, 325
Bme1390I	CCNGG	1 cut(s)	107
Bme18I	GGWCC	1 cut(s)	270
BmeT110I	CYCGRG	1 cut(s)	158
BmgBI	CACGTC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	270
BmiI	GGNNCC	1 cut(s)	188
BmrFI	CCNGG	1 cut(s)	107
BmsI	GCATC	1 cut(s)	105
BpiI	GAAGAC	2 cut(s)	103, 190
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	107
BseGI	GGATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	248
BseRI	GAGGAG	2 cut(s)	146, 179
BseYI	CCCAGC	1 cut(s)	261
Bsh1236I	CGCG	1 cut(s)	60
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	2 cut(s)	44, 323
BsiEI	CGRYCG	1 cut(s)	58
BsiHKCI	CYCGRG	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmAI	GTCTC	1 cut(s)	234
BsnI	GGCC	2 cut(s)	44, 323
BsoBI	CYCGRG	1 cut(s)	158
BspACI	CCGC	7 cut(s)	33, 58, 76, 93, 103, 324, 334
BspANI	GGCC	2 cut(s)	44, 323
BspCNI	CTCAG	1 cut(s)	249
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	188
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	86
BstDEI	CTNAG	1 cut(s)	257
BstENI	CCTNNNNNAGG	1 cut(s)	104
BstF5I	GGATG	1 cut(s)	96
BstFNI	CGCG	1 cut(s)	60
BstH2I	RGCGCY	1 cut(s)	16
BstHHI	GCGC	2 cut(s)	15, 62
BstMAI	GTCTC	1 cut(s)	234
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 90, 102
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	105
BstSFI	CTRYAG	1 cut(s)	285
BstUI	CGCG	1 cut(s)	60
BstV2I	GAAGAC	2 cut(s)	103, 190
BsuRI	GGCC	2 cut(s)	44, 323
BtgZI	GCGATG	3 cut(s)	13, 112, 262
BtrI	CACGTC	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	86
CfoI	GCGC	2 cut(s)	15, 62
Cfr13I	GGNCC	1 cut(s)	270
CviAII	CATG	1 cut(s)	178
CviJI	RGCY	8 cut(s)	44, 187, 261, 297, 309, 323, 346, 353
CviKI_1	RGCY	8 cut(s)	44, 187, 261, 297, 309, 323, 346, 353
DdeI	CTNAG	1 cut(s)	257
EaeI	YGGCCR	2 cut(s)	42, 321
EciI	GGCGGA	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	270
Eco88I	CYCGRG	1 cut(s)	158
EcoNI	CCTNNNNNAGG	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	105
FaeI	CATG	1 cut(s)	181
FaiI	YATR	2 cut(s)	179, 320
FatI	CATG	1 cut(s)	177
Fnu4HI	GCNGC	3 cut(s)	33, 94, 324
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	3 cut(s)	33, 94, 324
FspBI	CTAG	1 cut(s)	17
GlaI	GCGC	2 cut(s)	14, 61
GluI	GCNGC	3 cut(s)	33, 94, 324
GsaI	CCCAGC	1 cut(s)	265
HaeII	RGCGCY	1 cut(s)	16
HaeIII	GGCC	2 cut(s)	44, 323
HhaI	GCGC	2 cut(s)	15, 62
Hin1II	CATG	1 cut(s)	181
Hin6I	GCGC	2 cut(s)	13, 60
HinP1I	GCGC	2 cut(s)	13, 60
HindIII	AAGCTT	1 cut(s)	351
HinfI	GANTC	4 cut(s)	24, 161, 203, 253
HphI	GGTGA	4 cut(s)	58, 112, 229, 295
Hpy188I	TCNGA	3 cut(s)	23, 208, 258
Hpy99I	CGWCG	1 cut(s)	41
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	2 cut(s)	84, 141
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 90, 102
HpyF3I	CTNAG	1 cut(s)	257
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	181
HspAI	GCGC	2 cut(s)	13, 60
LmnI	GCTCC	1 cut(s)	192
LpnPI	CCDG	8 cut(s)	92, 119, 239, 247, 253, 253, 319, 323
LweI	GCATC	1 cut(s)	105
MaeI	CTAG	1 cut(s)	17
MaeII	ACGT	1 cut(s)	39
MboII	GAAGA	2 cut(s)	103, 190
MlsI	TGGCCA	1 cut(s)	44
MluNI	TGGCCA	1 cut(s)	44
MlyI	GAGTC	3 cut(s)	18, 170, 212
MmeI	TCCRAC	2 cut(s)	46, 174
MnlI	CCTC	9 cut(s)	62, 80, 110, 164, 167, 175, 200, 230, 337
Mox20I	TGGCCA	1 cut(s)	44
MscI	TGGCCA	1 cut(s)	44
MseI	TTAA	1 cut(s)	299
Msp20I	TGGCCA	1 cut(s)	44
MspA1I	CMGCKG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	107
MvaI	CCWGG	1 cut(s)	107
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	3 cut(s)	41, 90, 102
NlaIII	CATG	1 cut(s)	181
NlaIV	GGNNCC	1 cut(s)	188
PaeR7I	CTCGAG	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	253
PkrI	GCNGC	3 cut(s)	34, 95, 325
PleI	GAGTC	3 cut(s)	18, 169, 211
PpsI	GAGTC	3 cut(s)	18, 169, 211
Psp6I	CCWGG	1 cut(s)	105
PspFI	CCCAGC	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	188
PspPI	GGNCC	1 cut(s)	270
PspXI	VCTCGAGB	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	299
SatI	GCNGC	3 cut(s)	33, 94, 324
Sau96I	GGNCC	1 cut(s)	270
SchI	GAGTC	3 cut(s)	18, 170, 212
ScrFI	CCNGG	1 cut(s)	107
SfaNI	GCATC	1 cut(s)	105
SfcI	CTRYAG	1 cut(s)	285
Sfr274I	CTCGAG	1 cut(s)	158
SinI	GGWCC	1 cut(s)	270
SlaI	CTCGAG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
SsiI	CCGC	7 cut(s)	33, 58, 76, 93, 103, 324, 334
SspMI	CTAG	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	286
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	4 cut(s)	54, 159, 201, 348
TauI	GCSGC	3 cut(s)	35, 96, 326
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	1 cut(s)	299
Tru9I	TTAA	1 cut(s)	299
TscAI	CASTG	1 cut(s)	289
TspDTI	ATGAA	1 cut(s)	194
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	1 cut(s)	289
VpaK11BI	GGWCC	1 cut(s)	270
XagI	CCTNNNNNAGG	1 cut(s)	104
XhoI	CTCGAG	1 cut(s)	158
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.