Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001438

Physical Location & Seq

Genomic Coordinates Reverse (-)

63397454 .. 63398799

Gene Structure 1346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00212840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCATATAAAGGTGTGGAGGATTTGGGTTCTTCTAGTTGCAGTCAAACTGGGATGGCAAGTCAAGAGAAGAAAAGTCGTCATGCGTGGACTATATCAAGTTCAAATAGCACATGTGAAAGCTTGAGCGGCGGCGTCACTCCTCCCTTATCGACCAATTTCTTCGGACCGCGAAGCGACCCTTTGGTATCTCCACGTCCTCCGCCGGTCTTCTCCATCACCACCACCGCCGACTTCCGCAAGGTCTCCAACCTCCTCGAGTCCTCCATCGGCTACATGAAGTGGCTCCTCTCCGTCTTCGAGTCCGACGGCGCCGACCTCTCCCTGCCGCCCATTGCCAACAACAACCCGGTTCGGCGGCTCGGTCCTCTCCAACGCCACCATTCAAATGGGTTAGCTCGGGACCGAGTCGAGCGGCGAGCTCACTCGTCTCGGCCGGAGAGGGGACAACGATACGGTCGTCGAACCCGAAATGAAATGAGTGGGTCGTCGTTACGCCACGTCACCGGTGAGCACCACCTAGGTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008285 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

176

Amino Acids

19.27

Weight (kDa)

10.19

Isoelectric Point (pI)

57.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7792	PF25055	70 - 100	1.5e-08	Domain of unknown function (DUF7792)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26600 AT3G26600
fragaria_vesca	FvH4_4g25480 FvH4_5g06080
malus_domestica	MD06G1167100.v1.1 MD13G1102400.v1.1 MD14G1172700.v1.1 MD16G1102800.v1.1
prunus_persica	Prupe.1G089500_v2.0.a1 Prupe.1G243400_v2.0.a1 Prupe.5G166900_v2.0.a1
pyrus_communis	pycom06g14970 pycom06g14980 pycom13g08950 pycom14g14410 pycom16g08740
rosa_chinensis	RchiOBHm_Chr4g0423211 RchiOBHm_Chr4g0432811 RchiOBHm_Chr7g0192761 RchiOBHm_Chr7g0218041
rosa_laevigata	RLG00000004331 RLG00000006810
rosa_multiflora	Rmu_co8276235.1_g000001 Rmu_sc0001516.1_g000053 Rmu_sc0004101.1_g000049 Rmu_sc0005234.1_g000003 Rmu_sc0008148.1_g000037
rosa_roxburghii	Rroxscaffold_2G00090530 Rroxscaffold_3G00262710 Rroxscaffold_5G00374250 Rroxscaffold_7G00212840
rosa_rugosa	Rorug04G0263100 Rorug07G0004500
rosa_samantha	Rh1AG125500 Rh2AG461900 Rh2CG448900 Rh4AG317200 Rh4AG322300 Rh4BG325400 Rh4CG340300 Rh4DG320600 Rh4DG326400 Rh5BG349900 Rh5CG383400 Rh7AG129500 Rh7AG315400 Rh7BG130800 Rh7CG061100 Rh7CG134200 Rh7DG131700
rosa_wichuraiana	Rw4G027590 Rw7G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	311
AccBSI	CCGCTC	2 cut(s)	129, 415
AccII	CGCG	1 cut(s)	172
AciI	CCGC	9 cut(s)	129, 132, 170, 203, 228, 238, 329, 358, 415
AcoI	YGGCCR	1 cut(s)	434
AcyI	GRCGYC	2 cut(s)	135, 312
AfiI	CCNNNNNNNGG	1 cut(s)	443
AflIII	ACRYGT	1 cut(s)	113
AgeI	ACCGGT	1 cut(s)	506
AgsI	TTSAA	2 cut(s)	105, 387
AjiI	CACGTC	2 cut(s)	197, 502
AleI	CACNNNNGTG	1 cut(s)	522
AluBI	AGCT	3 cut(s)	123, 398, 422
AluI	AGCT	3 cut(s)	123, 398, 422
Alw21I	GWGCWC	2 cut(s)	424, 516
Alw26I	GTCTC	2 cut(s)	250, 435
Ama87I	CYCGRG	2 cut(s)	257, 399
AoxI	GGCC	1 cut(s)	434
AsiGI	ACCGGT	1 cut(s)	506
AspA2I	CCTAGG	1 cut(s)	520
AspLEI	GCGC	1 cut(s)	314
AspS9I	GGNCC	3 cut(s)	167, 365, 403
AsuC2I	CCSGG	1 cut(s)	350
AsuHPI	GGTGA	3 cut(s)	211, 496, 521
AvaI	CYCGRG	2 cut(s)	257, 399
AvaII	GGWCC	3 cut(s)	167, 365, 403
AvrII	CCTAGG	1 cut(s)	520
BaeI	ACNNNNGTAYC	2 cut(s)	445, 478
BanI	GGYRCC	1 cut(s)	311
BanII	GRGCYC	1 cut(s)	424
BbsI	GAAGAC	2 cut(s)	202, 289
Bbv12I	GWGCWC	2 cut(s)	424, 516
BccI	CCATC	3 cut(s)	49, 224, 275
BceAI	ACGGC	1 cut(s)	325
BcnI	CCSGG	1 cut(s)	350
BcoDI	GTCTC	2 cut(s)	250, 435
BfaI	CTAG	2 cut(s)	36, 521
BfoI	RGCGCY	1 cut(s)	315
BisI	GCNGC	5 cut(s)	130, 133, 329, 359, 416
BlnI	CCTAGG	1 cut(s)	520
BlsI	GCNGC	5 cut(s)	131, 134, 330, 360, 417
Bme1390I	CCNGG	1 cut(s)	350
Bme18I	GGWCC	3 cut(s)	167, 365, 403
BmeT110I	CYCGRG	2 cut(s)	257, 399
BmgBI	CACGTC	2 cut(s)	197, 502
BmgT120I	GGNCC	3 cut(s)	167, 365, 403
BmiI	GGNNCC	3 cut(s)	287, 313, 404
BmrFI	CCNGG	1 cut(s)	350
BmrI	ACTGGG	1 cut(s)	60
BmuI	ACTGGG	1 cut(s)	60
BpiI	GAAGAC	2 cut(s)	202, 289
BpuEI	CTTGAG	1 cut(s)	145
BpuMI	CCSGG	1 cut(s)	350
BsaHI	GRCGYC	2 cut(s)	135, 312
BsaI	GGTCTC	1 cut(s)	250
BsaJI	CCNNGG	1 cut(s)	520
BsaWI	WCCGGW	1 cut(s)	506
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse118I	RCCGGY	2 cut(s)	205, 506
Bse1I	ACTGG	1 cut(s)	55
Bse3DI	GCAATG	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	520
BseGI	GGATG	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseMI	GCAATG	1 cut(s)	333
BseNI	ACTGG	1 cut(s)	55
BseRI	GAGGAG	3 cut(s)	132, 245, 278
BseX3I	CGGCCG	1 cut(s)	434
Bsh1236I	CGCG	1 cut(s)	172
Bsh1285I	CGRYCG	2 cut(s)	437, 460
BshFI	GGCC	1 cut(s)	436
BshNI	GGYRCC	1 cut(s)	311
BshTI	ACCGGT	1 cut(s)	506
BsiEI	CGRYCG	2 cut(s)	437, 460
BsiHKAI	GWGCWC	2 cut(s)	424, 516
BsiHKCI	CYCGRG	2 cut(s)	257, 399
BsiSI	CCGG	4 cut(s)	206, 350, 437, 507
BslFI	GGGAC	2 cut(s)	416, 459
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmAI	GTCTC	2 cut(s)	250, 435
BsmBI	CGTCTC	1 cut(s)	435
BsmFI	GGGAC	2 cut(s)	416, 459
BsnI	GGCC	1 cut(s)	436
Bso31I	GGTCTC	1 cut(s)	250
BsoBI	CYCGRG	2 cut(s)	257, 399
Bsp1286I	GDGCHC	2 cut(s)	424, 516
BspACI	CCGC	9 cut(s)	129, 132, 170, 203, 228, 238, 329, 358, 415
BspANI	GGCC	1 cut(s)	436
BspFNI	CGCG	1 cut(s)	172
BspLI	GGNNCC	3 cut(s)	287, 313, 404
BspT107I	GGYRCC	1 cut(s)	311
BspTNI	GGTCTC	1 cut(s)	250
BsrBI	CCGCTC	2 cut(s)	129, 415
BsrDI	GCAATG	1 cut(s)	333
BsrFI	RCCGGY	2 cut(s)	205, 506
BsrI	ACTGG	1 cut(s)	55
BssAI	RCCGGY	2 cut(s)	205, 506
BssECI	CCNNGG	1 cut(s)	520
BssNI	GRCGYC	2 cut(s)	135, 312
BssT1I	CCWWGG	1 cut(s)	520
Bst4CI	ACNGT	1 cut(s)	458
BstACI	GRCGYC	2 cut(s)	135, 312
BstC8I	GCNNGC	1 cut(s)	420
BstF5I	GGATG	1 cut(s)	60
BstFNI	CGCG	1 cut(s)	172
BstH2I	RGCGCY	1 cut(s)	315
BstHHI	GCGC	1 cut(s)	314
BstMAI	GTCTC	2 cut(s)	250, 435
BstMCI	CGRYCG	2 cut(s)	437, 460
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstNSI	RCATGY	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	348
BstUI	CGCG	1 cut(s)	172
BstV2I	GAAGAC	2 cut(s)	202, 289
BstXI	CCANNNNNNTGG	2 cut(s)	389, 524
BstZI	CGGCCG	1 cut(s)	434
BsuRI	GGCC	1 cut(s)	436
BtrI	CACGTC	2 cut(s)	197, 502
BtsCI	GGATG	1 cut(s)	60
Cac8I	GCNNGC	1 cut(s)	420
CfoI	GCGC	1 cut(s)	314
Cfr10I	RCCGGY	2 cut(s)	205, 506
Cfr13I	GGNCC	3 cut(s)	167, 365, 403
CpoI	CGGWCCG	1 cut(s)	167
CseI	GACGC	1 cut(s)	124
CspAI	ACCGGT	1 cut(s)	506
CspI	CGGWCCG	1 cut(s)	167
CviAII	CATG	3 cut(s)	83, 114, 277
CviJI	RGCY	7 cut(s)	123, 273, 286, 361, 398, 422, 436
CviKI_1	RGCY	7 cut(s)	123, 273, 286, 361, 398, 422, 436
DinI	GGCGCC	1 cut(s)	313
EaeI	YGGCCR	1 cut(s)	434
EagI	CGGCCG	1 cut(s)	434
EciI	GGCGGA	1 cut(s)	192
Ecl136II	GAGCTC	1 cut(s)	422
EclXI	CGGCCG	1 cut(s)	434
Eco130I	CCWWGG	1 cut(s)	520
Eco24I	GRGCYC	1 cut(s)	424
Eco31I	GGTCTC	1 cut(s)	250
Eco47I	GGWCC	3 cut(s)	167, 365, 403
Eco52I	CGGCCG	1 cut(s)	434
Eco53kI	GAGCTC	1 cut(s)	422
Eco88I	CYCGRG	2 cut(s)	257, 399
EcoICRI	GAGCTC	1 cut(s)	422
EcoT14I	CCWWGG	1 cut(s)	520
EcoT38I	GRGCYC	1 cut(s)	424
EgeI	GGCGCC	1 cut(s)	313
EheI	GGCGCC	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	520
Esp3I	CGTCTC	1 cut(s)	435
FaeI	CATG	3 cut(s)	86, 117, 280
FaiI	YATR	6 cut(s)	7, 9, 84, 95, 115, 278
FalI	AAGNNNNNCTT	2 cut(s)	166, 198
FaqI	GGGAC	2 cut(s)	416, 459
FatI	CATG	3 cut(s)	82, 113, 276
Fnu4HI	GCNGC	5 cut(s)	130, 133, 329, 359, 416
FokI	GGATG	1 cut(s)	67
FriOI	GRGCYC	1 cut(s)	424
Fsp4HI	GCNGC	5 cut(s)	130, 133, 329, 359, 416
FspBI	CTAG	2 cut(s)	36, 521
GlaI	GCGC	1 cut(s)	313
GluI	GCNGC	5 cut(s)	130, 133, 329, 359, 416
HaeII	RGCGCY	1 cut(s)	315
HaeIII	GGCC	1 cut(s)	436
HapII	CCGG	4 cut(s)	206, 350, 437, 507
HgaI	GACGC	1 cut(s)	124
HhaI	GCGC	1 cut(s)	314
Hin1I	GRCGYC	2 cut(s)	135, 312
Hin1II	CATG	3 cut(s)	86, 117, 280
Hin6I	GCGC	1 cut(s)	312
HinP1I	GCGC	1 cut(s)	312
HindIII	AAGCTT	1 cut(s)	121
HinfI	GANTC	3 cut(s)	260, 302, 408
HpaII	CCGG	4 cut(s)	206, 350, 437, 507
HphI	GGTGA	3 cut(s)	211, 496, 521
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	2 cut(s)	167, 307
Hpy188III	TCNNGA	2 cut(s)	65, 401
Hpy8I	GTNNAC	1 cut(s)	90
Hpy99I	CGWCG	3 cut(s)	311, 465, 493
HpyCH4III	ACNGT	1 cut(s)	458
HpyCH4IV	ACGT	2 cut(s)	196, 501
HpyCH4V	TGCA	1 cut(s)	42
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
HpySE526I	ACGT	2 cut(s)	196, 501
Hsp92I	GRCGYC	2 cut(s)	135, 312
Hsp92II	CATG	3 cut(s)	86, 117, 280
HspAI	GCGC	1 cut(s)	312
KasI	GGCGCC	1 cut(s)	311
LmnI	GCTCC	1 cut(s)	291
LpnPI	CCDG	6 cut(s)	36, 219, 338, 363, 450, 520
MaeI	CTAG	2 cut(s)	36, 521
MaeII	ACGT	2 cut(s)	196, 501
MaeIII	GTNAC	3 cut(s)	136, 492, 502
MbiI	CCGCTC	2 cut(s)	129, 415
MboII	GAAGA	5 cut(s)	24, 82, 154, 202, 289
MhlI	GDGCHC	2 cut(s)	424, 516
MluCI	AATT	1 cut(s)	157
Mly113I	GGCGCC	1 cut(s)	312
MlyI	GAGTC	3 cut(s)	269, 311, 417
MmeI	TCCRAC	3 cut(s)	273, 330, 397
MslI	CAYNNNNRTG	2 cut(s)	387, 522
MspI	CCGG	4 cut(s)	206, 350, 437, 507
MspR9I	CCNGG	1 cut(s)	350
MvnI	CGCG	1 cut(s)	172
MwoI	GCNNNNNNNGC	1 cut(s)	129
NarI	GGCGCC	1 cut(s)	312
NciI	CCSGG	1 cut(s)	350
NlaIII	CATG	3 cut(s)	86, 117, 280
NlaIV	GGNNCC	3 cut(s)	287, 313, 404
NmeAIII	GCCGAG	1 cut(s)	412
NmuCI	GTSAC	2 cut(s)	136, 502
NspI	RCATGY	1 cut(s)	117
OliI	CACNNNNGTG	1 cut(s)	522
PaeR7I	CTCGAG	1 cut(s)	257
PciI	ACATGT	1 cut(s)	113
PcsI	WCGNNNNNNNCGW	2 cut(s)	457, 466
PflFI	GACNNNGTC	1 cut(s)	407
PinAI	ACCGGT	1 cut(s)	506
PkrI	GCNGC	5 cut(s)	131, 134, 330, 360, 417
PleI	GAGTC	3 cut(s)	268, 310, 416
PluTI	GGCGCC	1 cut(s)	315
PpsI	GAGTC	3 cut(s)	268, 310, 416
PscI	ACATGT	1 cut(s)	113
Psp124BI	GAGCTC	1 cut(s)	424
PspN4I	GGNNCC	3 cut(s)	287, 313, 404
PspPI	GGNCC	3 cut(s)	167, 365, 403
PspXI	VCTCGAGB	1 cut(s)	257
PsyI	GACNNNGTC	1 cut(s)	407
RseI	CAYNNNNRTG	2 cut(s)	387, 522
Rsr2I	CGGWCCG	1 cut(s)	167
RsrII	CGGWCCG	1 cut(s)	167
SacI	GAGCTC	1 cut(s)	424
SatI	GCNGC	5 cut(s)	130, 133, 329, 359, 416
Sau96I	GGNCC	3 cut(s)	167, 365, 403
SchI	GAGTC	3 cut(s)	269, 311, 417
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	2 cut(s)	424, 516
SfoI	GGCGCC	1 cut(s)	313
Sfr274I	CTCGAG	1 cut(s)	257
SgrAI	CRCCGGYG	1 cut(s)	506
SinI	GGWCC	3 cut(s)	167, 365, 403
SlaI	CTCGAG	1 cut(s)	257
SmiMI	CAYNNNNRTG	2 cut(s)	387, 522
SmlI	CTYRAG	2 cut(s)	124, 257
SmoI	CTYRAG	2 cut(s)	124, 257
Sse9I	AATT	1 cut(s)	157
SsiI	CCGC	9 cut(s)	129, 132, 170, 203, 228, 238, 329, 358, 415
SspDI	GGCGCC	1 cut(s)	311
SspMI	CTAG	2 cut(s)	36, 521
SstI	GAGCTC	1 cut(s)	424
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	1 cut(s)	520
TaaI	ACNGT	1 cut(s)	458
TaiI	ACGT	2 cut(s)	199, 504
TaqI	TCGA	5 cut(s)	152, 258, 300, 411, 463
TaqII	GACCGA	2 cut(s)	353, 420
TasI	AATT	1 cut(s)	157
TauI	GCSGC	5 cut(s)	132, 135, 331, 361, 418
TseFI	GTSAC	2 cut(s)	136, 502
Tsp45I	GTSAC	2 cut(s)	136, 502
TspDTI	ATGAA	2 cut(s)	293, 489
TspGWI	ACGGA	1 cut(s)	283
Tth111I	GACNNNGTC	1 cut(s)	407
VpaK11BI	GGWCC	3 cut(s)	167, 365, 403
XceI	RCATGY	1 cut(s)	117
XcmI	CCANNNNNNNNNTGG	1 cut(s)	386
XhoI	CTCGAG	1 cut(s)	257
XmaJI	CCTAGG	1 cut(s)	520
XspI	CTAG	2 cut(s)	36, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.