Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001516.1

Orthogroup ID

OG0001438

Physical Location & Seq

Genomic Coordinates Forward (+)

201742 .. 203135

Gene Structure 1394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001516.1_g000053.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atgtcgtctttgaccttgaagaggacgatgtgcacgacgacgggggatgacgacatggtgactgtggcgaatttggggatgcgggttttgggaaaagagaagtggttgtggtgtttgggaggtgagagagaacgagagaatggaagaaaaggctccggtattagactagggctccttagaagaggagtccggatcgccgccgcctccctttccctctacgagcgcccagtccgacgcatcgccgccgatgtggccaagaacctcgaccgcgccctcaccctcgtccgcaagtgcaagcacagcggcgtcctccgccaggtcttctccatcaccaccatcgccgacttccgcaaggtgtccaacctcctcgagtcctccatcggcgacatgaagtggctcctctccgtcttcgagtcagacagcgccaacctctccctgtcgcccatcgccagcaacgacccgattctgagctgggtctggtcctacatcgccactgtaggagatagcttaatcaccagcctgaaaagtgtggccgcctctaaccgcactaaaaagctcgaagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008285 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

188

Amino Acids

20.7

Weight (kDa)

10.01

Isoelectric Point (pI)

31.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26600 AT3G26600
fragaria_vesca	FvH4_4g25480 FvH4_5g06080
malus_domestica	MD06G1167100.v1.1 MD13G1102400.v1.1 MD14G1172700.v1.1 MD16G1102800.v1.1
prunus_persica	Prupe.1G089500_v2.0.a1 Prupe.1G243400_v2.0.a1 Prupe.5G166900_v2.0.a1
pyrus_communis	pycom06g14970 pycom06g14980 pycom13g08950 pycom14g14410 pycom16g08740
rosa_chinensis	RchiOBHm_Chr4g0423211 RchiOBHm_Chr4g0432811 RchiOBHm_Chr7g0192761 RchiOBHm_Chr7g0218041
rosa_laevigata	RLG00000004331 RLG00000006810
rosa_multiflora	Rmu_co8276235.1_g000001 Rmu_sc0001516.1_g000053 Rmu_sc0004101.1_g000049 Rmu_sc0005234.1_g000003 Rmu_sc0008148.1_g000037
rosa_roxburghii	Rroxscaffold_2G00090530 Rroxscaffold_3G00262710 Rroxscaffold_5G00374250 Rroxscaffold_7G00212840
rosa_rugosa	Rorug04G0263100 Rorug07G0004500
rosa_samantha	Rh1AG125500 Rh2AG461900 Rh2CG448900 Rh4AG317200 Rh4AG322300 Rh4BG325400 Rh4CG340300 Rh4DG320600 Rh4DG326400 Rh5BG349900 Rh5CG383400 Rh7AG129500 Rh7AG315400 Rh7BG130800 Rh7CG061100 Rh7CG134200 Rh7DG131700
rosa_wichuraiana	Rw4G027590 Rw7G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	270
AccIII	TCCGGA	1 cut(s)	189
AclWI	GGATC	1 cut(s)	200
AcoI	YGGCCR	2 cut(s)	252, 531
AcsI	RAATTY	1 cut(s)	70
AcyI	GRCGYC	1 cut(s)	306
AfiI	CCNNNNNNNGG	2 cut(s)	21, 316
AgsI	TTSAA	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	4 cut(s)	471, 507, 556, 563
AluI	AGCT	4 cut(s)	471, 507, 556, 563
Alw21I	GWGCWC	1 cut(s)	35
Alw44I	GTGCAC	1 cut(s)	31
AlwI	GGATC	1 cut(s)	200
Ama87I	CYCGRG	1 cut(s)	368
Aor13HI	TCCGGA	1 cut(s)	189
AoxI	GGCC	2 cut(s)	252, 531
ApaLI	GTGCAC	1 cut(s)	31
ApoI	RAATTY	1 cut(s)	70
AspLEI	GCGC	3 cut(s)	225, 272, 425
AspS9I	GGNCC	1 cut(s)	480
AsuHPI	GGTGA	5 cut(s)	70, 134, 268, 322, 505
AvaI	CYCGRG	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	480
BaeGI	GKGCMC	1 cut(s)	35
BalI	TGGCCA	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	174
BbsI	GAAGAC	2 cut(s)	313, 400
Bbv12I	GWGCWC	1 cut(s)	35
BccI	CCATC	4 cut(s)	335, 344, 386, 452
BciT130I	CCWGG	1 cut(s)	317
BfaI	CTAG	1 cut(s)	167
BfmI	CTRYAG	1 cut(s)	495
BfoI	RGCGCY	2 cut(s)	226, 426
BglI	GCCNNNNNGGC	1 cut(s)	251
BisI	GCNGC	5 cut(s)	198, 201, 243, 304, 534
BlsI	GCNGC	5 cut(s)	199, 202, 244, 305, 535
Bme1390I	CCNGG	1 cut(s)	317
Bme18I	GGWCC	1 cut(s)	480
BmeT110I	CYCGRG	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	480
BmiI	GGNNCC	3 cut(s)	154, 173, 398
BmrFI	CCNGG	1 cut(s)	317
BmrI	ACTGGG	1 cut(s)	221
BmsI	GCATC	2 cut(s)	69, 246
BmuI	ACTGGG	1 cut(s)	221
BpiI	GAAGAC	2 cut(s)	313, 400
BsaHI	GRCGYC	1 cut(s)	306
BsaWI	WCCGGW	2 cut(s)	155, 189
BsaXI	ACNNNNNCTCC	2 cut(s)	156, 186
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 316
Bse1I	ACTGG	1 cut(s)	227
BseAI	TCCGGA	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	317
BseGI	GGATG	2 cut(s)	52, 84
BseLI	CCNNNNNNNGG	2 cut(s)	21, 316
BseMII	CTCAG	1 cut(s)	458
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	3 cut(s)	198, 356, 389
BseSI	GKGCMC	1 cut(s)	35
BseYI	CCCAGC	1 cut(s)	471
Bsh1236I	CGCG	1 cut(s)	270
Bsh1285I	CGRYCG	1 cut(s)	268
BshFI	GGCC	2 cut(s)	254, 533
BsiEI	CGRYCG	1 cut(s)	268
BsiHKAI	GWGCWC	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	368
BsiSI	CCGG	2 cut(s)	156, 190
BslI	CCNNNNNNNGG	2 cut(s)	21, 316
BsnI	GGCC	2 cut(s)	254, 533
BsoBI	CYCGRG	1 cut(s)	368
Bsp1286I	GDGCHC	2 cut(s)	35, 174
Bsp13I	TCCGGA	1 cut(s)	189
Bsp143I	GATC	1 cut(s)	192
BspANI	GGCC	2 cut(s)	254, 533
BspCNI	CTCAG	1 cut(s)	459
BspEI	TCCGGA	1 cut(s)	189
BspFNI	CGCG	1 cut(s)	270
BspLI	GGNNCC	3 cut(s)	154, 173, 398
BspPI	GGATC	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	227
BssMI	GATC	1 cut(s)	192
BssNI	GRCGYC	1 cut(s)	306
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	2 cut(s)	64, 496
Bst6I	CTCTTC	2 cut(s)	14, 175
BstACI	GRCGYC	1 cut(s)	306
BstC8I	GCNNGC	2 cut(s)	296, 451
BstDEI	CTNAG	2 cut(s)	176, 467
BstENI	CCTNNNNNAGG	2 cut(s)	19, 314
BstF5I	GGATG	2 cut(s)	52, 84
BstFNI	CGCG	1 cut(s)	270
BstH2I	RGCGCY	2 cut(s)	226, 426
BstHHI	GCGC	3 cut(s)	225, 272, 425
BstKTI	GATC	1 cut(s)	195
BstMBI	GATC	1 cut(s)	192
BstMCI	CGRYCG	1 cut(s)	268
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 300, 312
BstNI	CCWGG	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	315
BstSFI	CTRYAG	1 cut(s)	495
BstSLI	GKGCMC	1 cut(s)	35
BstUI	CGCG	1 cut(s)	270
BstV2I	GAAGAC	2 cut(s)	313, 400
BsuRI	GGCC	2 cut(s)	254, 533
BtgZI	GCGATG	4 cut(s)	223, 322, 430, 472
BtsCI	GGATG	2 cut(s)	52, 84
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	2 cut(s)	296, 451
CfoI	GCGC	3 cut(s)	225, 272, 425
Cfr13I	GGNCC	1 cut(s)	480
CseI	GACGC	2 cut(s)	243, 295
CviAII	CATG	2 cut(s)	55, 388
DdeI	CTNAG	2 cut(s)	176, 467
DpnI	GATC	1 cut(s)	194
DpnII	GATC	1 cut(s)	192
EaeI	YGGCCR	2 cut(s)	252, 531
Eam1104I	CTCTTC	2 cut(s)	14, 175
EarI	CTCTTC	2 cut(s)	14, 175
EciI	GGCGGA	1 cut(s)	302
Eco24I	GRGCYC	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	480
Eco88I	CYCGRG	1 cut(s)	368
EcoNI	CCTNNNNNAGG	2 cut(s)	19, 314
EcoRII	CCWGG	1 cut(s)	315
EcoT38I	GRGCYC	1 cut(s)	174
FaeI	CATG	2 cut(s)	58, 391
FaiI	YATR	2 cut(s)	56, 389
FatI	CATG	2 cut(s)	54, 387
FauI	CCCGC	1 cut(s)	75
Fnu4HI	GCNGC	5 cut(s)	198, 201, 243, 304, 534
FokI	GGATG	2 cut(s)	59, 91
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	5 cut(s)	198, 201, 243, 304, 534
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	3 cut(s)	224, 271, 424
GluI	GCNGC	5 cut(s)	198, 201, 243, 304, 534
GsaI	CCCAGC	1 cut(s)	475
HaeII	RGCGCY	2 cut(s)	226, 426
HaeIII	GGCC	2 cut(s)	254, 533
HapII	CCGG	2 cut(s)	156, 190
HgaI	GACGC	2 cut(s)	243, 295
HhaI	GCGC	3 cut(s)	225, 272, 425
Hin1I	GRCGYC	1 cut(s)	306
Hin1II	CATG	2 cut(s)	58, 391
Hin6I	GCGC	3 cut(s)	223, 270, 423
HinP1I	GCGC	3 cut(s)	223, 270, 423
HindIII	AAGCTT	1 cut(s)	561
HinfI	GANTC	4 cut(s)	186, 371, 413, 463
HpaII	CCGG	2 cut(s)	156, 190
HphI	GGTGA	5 cut(s)	70, 134, 268, 322, 505
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	3 cut(s)	233, 418, 468
Hpy188III	TCNNGA	1 cut(s)	190
Hpy8I	GTNNAC	1 cut(s)	33
Hpy99I	CGWCG	3 cut(s)	40, 43, 237
HpyCH4III	ACNGT	2 cut(s)	64, 496
HpyCH4V	TGCA	2 cut(s)	33, 294
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 300, 312
HpyF3I	CTNAG	2 cut(s)	176, 467
Hsp92I	GRCGYC	1 cut(s)	306
Hsp92II	CATG	2 cut(s)	58, 391
HspAI	GCGC	3 cut(s)	223, 270, 423
Kpn2I	TCCGGA	1 cut(s)	189
Kzo9I	GATC	1 cut(s)	192
LmnI	GCTCC	3 cut(s)	158, 177, 402
LweI	GCATC	2 cut(s)	69, 246
MaeI	CTAG	1 cut(s)	167
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	1 cut(s)	194
MboI	GATC	1 cut(s)	192
MboII	GAAGA	5 cut(s)	31, 156, 192, 313, 400
MhlI	GDGCHC	2 cut(s)	35, 174
MlsI	TGGCCA	1 cut(s)	254
MluCI	AATT	1 cut(s)	70
MluNI	TGGCCA	1 cut(s)	254
MlyI	GAGTC	3 cut(s)	195, 380, 422
MmeI	TCCRAC	2 cut(s)	256, 384
Mox20I	TGGCCA	1 cut(s)	254
MroI	TCCGGA	1 cut(s)	189
MscI	TGGCCA	1 cut(s)	254
MseI	TTAA	1 cut(s)	509
Msp20I	TGGCCA	1 cut(s)	254
MspA1I	CMGCKG	1 cut(s)	303
MspI	CCGG	2 cut(s)	156, 190
MspR9I	CCNGG	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	317
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	3 cut(s)	251, 300, 312
NdeII	GATC	1 cut(s)	192
NlaIII	CATG	2 cut(s)	58, 391
NlaIV	GGNNCC	3 cut(s)	154, 173, 398
NmuCI	GTSAC	1 cut(s)	58
PaeR7I	CTCGAG	1 cut(s)	368
PcsI	WCGNNNNNNNCGW	2 cut(s)	32, 453
PfeI	GAWTC	1 cut(s)	463
PkrI	GCNGC	5 cut(s)	199, 202, 244, 305, 535
PleI	GAGTC	3 cut(s)	194, 379, 421
PpsI	GAGTC	3 cut(s)	194, 379, 421
Psp6I	CCWGG	1 cut(s)	315
PspFI	CCCAGC	1 cut(s)	471
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	3 cut(s)	154, 173, 398
PspPI	GGNCC	1 cut(s)	480
PspXI	VCTCGAGB	1 cut(s)	368
SaqAI	TTAA	1 cut(s)	509
SatI	GCNGC	5 cut(s)	198, 201, 243, 304, 534
Sau3AI	GATC	1 cut(s)	192
Sau96I	GGNCC	1 cut(s)	480
SchI	GAGTC	3 cut(s)	195, 380, 422
ScrFI	CCNGG	1 cut(s)	317
SduI	GDGCHC	2 cut(s)	35, 174
SfaNI	GCATC	2 cut(s)	69, 246
SfcI	CTRYAG	1 cut(s)	495
Sfr274I	CTCGAG	1 cut(s)	368
SinI	GGWCC	1 cut(s)	480
SlaI	CTCGAG	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	1 cut(s)	70
SspMI	CTAG	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	315
TaaI	ACNGT	2 cut(s)	64, 496
TaqI	TCGA	4 cut(s)	264, 369, 411, 558
TasI	AATT	1 cut(s)	70
TauI	GCSGC	5 cut(s)	200, 203, 245, 306, 536
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	1 cut(s)	509
Tru9I	TTAA	1 cut(s)	509
TscAI	CASTG	1 cut(s)	499
TseFI	GTSAC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	404
TspGWI	ACGGA	1 cut(s)	394
TspRI	CASTG	1 cut(s)	499
VneI	GTGCAC	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	480
XagI	CCTNNNNNAGG	2 cut(s)	19, 314
XapI	RAATTY	1 cut(s)	70
XhoI	CTCGAG	1 cut(s)	368
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.