Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001438

Physical Location & Seq

Genomic Coordinates Reverse (-)

53723607 .. 53723795

Gene Structure 189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG349900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGGCCAAGAACCTCGACCGCGCCCTCACCCTCGTCCGCAAGTGCAACCACAGCGGCGTCCTCCACCAAGTCTTCTCCATCATCACCACCGCCGACTTCCTCAAGCTGTCCAACCTCCTCGAGTCCTCAATTGGCGACATGAAGTGGCTCCTCTCCGTCTTCGAGTCCGATGGTACCAACCTCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008285 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

62

Amino Acids

6.89

Weight (kDa)

6.7

Isoelectric Point (pI)

11.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7792	PF25055	2 - 55	1.9e-21	Domain of unknown function (DUF7792)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26600 AT3G26600
fragaria_vesca	FvH4_4g25480 FvH4_5g06080
malus_domestica	MD06G1167100.v1.1 MD13G1102400.v1.1 MD14G1172700.v1.1 MD16G1102800.v1.1
prunus_persica	Prupe.1G089500_v2.0.a1 Prupe.1G243400_v2.0.a1 Prupe.5G166900_v2.0.a1
pyrus_communis	pycom06g14970 pycom06g14980 pycom13g08950 pycom14g14410 pycom16g08740
rosa_chinensis	RchiOBHm_Chr4g0423211 RchiOBHm_Chr4g0432811 RchiOBHm_Chr7g0192761 RchiOBHm_Chr7g0218041
rosa_laevigata	RLG00000004331 RLG00000006810
rosa_multiflora	Rmu_co8276235.1_g000001 Rmu_sc0001516.1_g000053 Rmu_sc0004101.1_g000049 Rmu_sc0005234.1_g000003 Rmu_sc0008148.1_g000037
rosa_roxburghii	Rroxscaffold_2G00090530 Rroxscaffold_3G00262710 Rroxscaffold_5G00374250 Rroxscaffold_7G00212840
rosa_rugosa	Rorug04G0263100 Rorug07G0004500
rosa_samantha	Rh1AG125500 Rh2AG461900 Rh2CG448900 Rh4AG317200 Rh4AG322300 Rh4BG325400 Rh4CG340300 Rh4DG320600 Rh4DG326400 Rh5BG349900 Rh5CG383400 Rh7AG129500 Rh7AG315400 Rh7BG130800 Rh7CG061100 Rh7CG134200 Rh7DG131700
rosa_wichuraiana	Rw4G027590 Rw7G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	173
AccB1I	GGYRCC	1 cut(s)	173
AccII	CGCG	1 cut(s)	21
AciI	CCGC	4 cut(s)	19, 37, 54, 90
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	1 cut(s)	175
AluBI	AGCT	1 cut(s)	106
AluI	AGCT	1 cut(s)	106
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	1 cut(s)	3
Asp718I	GGTACC	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	23
AsuHPI	GGTGA	2 cut(s)	19, 76
AvaI	CYCGRG	1 cut(s)	119
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	173
BbsI	GAAGAC	2 cut(s)	64, 151
BccI	CCATC	2 cut(s)	86, 164
BisI	GCNGC	1 cut(s)	55
BlsI	GCNGC	1 cut(s)	56
BmeT110I	CYCGRG	1 cut(s)	119
BmiI	GGNNCC	2 cut(s)	149, 175
BpiI	GAAGAC	2 cut(s)	64, 151
BpuEI	CTTGAG	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	57
BseRI	GAGGAG	2 cut(s)	107, 140
Bsh1236I	CGCG	1 cut(s)	21
Bsh1285I	CGRYCG	1 cut(s)	19
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	173
BsiEI	CGRYCG	1 cut(s)	19
BsiHKCI	CYCGRG	1 cut(s)	119
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	119
BspACI	CCGC	4 cut(s)	19, 37, 54, 90
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	21
BspLI	GGNNCC	2 cut(s)	149, 175
BspT107I	GGYRCC	1 cut(s)	173
BssNI	GRCGYC	1 cut(s)	57
BstACI	GRCGYC	1 cut(s)	57
BstFNI	CGCG	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	23
BstMCI	CGRYCG	1 cut(s)	19
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstUI	CGCG	1 cut(s)	21
BstV2I	GAAGAC	2 cut(s)	64, 151
BsuRI	GGCC	1 cut(s)	5
CfoI	GCGC	1 cut(s)	23
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	3 cut(s)	5, 106, 148
CviKI_1	RGCY	3 cut(s)	5, 106, 148
CviQI	GTAC	1 cut(s)	174
EaeI	YGGCCR	1 cut(s)	3
Eco88I	CYCGRG	1 cut(s)	119
FaeI	CATG	1 cut(s)	142
FaiI	YATR	2 cut(s)	140, 187
FatI	CATG	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	55
Fsp4HI	GCNGC	1 cut(s)	55
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	1 cut(s)	23
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	1 cut(s)	142
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HinfI	GANTC	2 cut(s)	122, 164
HphI	GGTGA	2 cut(s)	19, 76
Hpy188I	TCNGA	1 cut(s)	169
HpyCH4V	TGCA	1 cut(s)	45
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	142
HspAI	GCGC	1 cut(s)	21
KpnI	GGTACC	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	153
MboII	GAAGA	2 cut(s)	64, 151
MfeI	CAATTG	1 cut(s)	129
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	129
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	131, 173
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	9 cut(s)	23, 35, 41, 71, 110, 125, 128, 136, 161
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	54
MunI	CAATTG	1 cut(s)	129
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	51
NlaIII	CATG	1 cut(s)	142
NlaIV	GGNNCC	2 cut(s)	149, 175
PaeR7I	CTCGAG	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	56
PleI	GAGTC	2 cut(s)	130, 172
PpsI	GAGTC	2 cut(s)	130, 172
PspN4I	GGNNCC	2 cut(s)	149, 175
PspXI	VCTCGAGB	1 cut(s)	119
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
SatI	GCNGC	1 cut(s)	55
SchI	GAGTC	2 cut(s)	131, 173
SetI	ASST	4 cut(s)	15, 108, 117, 183
Sfr274I	CTCGAG	1 cut(s)	119
SlaI	CTCGAG	1 cut(s)	119
SmlI	CTYRAG	2 cut(s)	101, 119
SmoI	CTYRAG	2 cut(s)	101, 119
Sse9I	AATT	1 cut(s)	129
SsiI	CCGC	4 cut(s)	19, 37, 54, 90
TaqI	TCGA	3 cut(s)	15, 120, 162
TasI	AATT	1 cut(s)	129
TauI	GCSGC	1 cut(s)	57
TspDTI	ATGAA	1 cut(s)	155
TspGWI	ACGGA	1 cut(s)	145
XhoI	CTCGAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.