Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001438

Physical Location & Seq

Genomic Coordinates Reverse (-)

55051375 .. 55051782

Gene Structure 408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG326400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAATGTGGCCACGGCCGAAAATTCTGCTATCCACCTAGGTGGTGCTCACCTAGTGACGTGGCAGAACGACAGCTACTCATTTCACGTTCTCCGTCAGGTCTTCTCCATCACCACTACTACCGACTTCCGCAAGGTCTCCAACCTCCTCGAGTCCTCTATCGGCCACATGAAGTGGCTCCTCTCCGTCTTAGAGTTCGACGGCGCCAACCTCTCCCTACCGCCCATCGCCAGCAACGACCCGATTCTGAGCTGGGTCTGGTCCTCCATCGCCACCATTCAAATGGGTCAGCTCCGGGACAGAGTCGAGGCGGCGAGCTCACTCGTCTCGCTGGCAAGGGACAACGACCGGAACAAGAAGATAATTGTTGATGAGCCAGTCCAGCTAGCCAAGGGTGCTTGTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008285 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

135

Amino Acids

14.9

Weight (kDa)

6.4

Isoelectric Point (pI)

27.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7792	PF25055	29 - 64	1.2e-10	Domain of unknown function (DUF7792)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26600 AT3G26600
fragaria_vesca	FvH4_4g25480 FvH4_5g06080
malus_domestica	MD06G1167100.v1.1 MD13G1102400.v1.1 MD14G1172700.v1.1 MD16G1102800.v1.1
prunus_persica	Prupe.1G089500_v2.0.a1 Prupe.1G243400_v2.0.a1 Prupe.5G166900_v2.0.a1
pyrus_communis	pycom06g14970 pycom06g14980 pycom13g08950 pycom14g14410 pycom16g08740
rosa_chinensis	RchiOBHm_Chr4g0423211 RchiOBHm_Chr4g0432811 RchiOBHm_Chr7g0192761 RchiOBHm_Chr7g0218041
rosa_laevigata	RLG00000004331 RLG00000006810
rosa_multiflora	Rmu_co8276235.1_g000001 Rmu_sc0001516.1_g000053 Rmu_sc0004101.1_g000049 Rmu_sc0005234.1_g000003 Rmu_sc0008148.1_g000037
rosa_roxburghii	Rroxscaffold_2G00090530 Rroxscaffold_3G00262710 Rroxscaffold_5G00374250 Rroxscaffold_7G00212840
rosa_rugosa	Rorug04G0263100 Rorug07G0004500
rosa_samantha	Rh1AG125500 Rh2AG461900 Rh2CG448900 Rh4AG317200 Rh4AG322300 Rh4BG325400 Rh4CG340300 Rh4DG320600 Rh4DG326400 Rh5BG349900 Rh5CG383400 Rh7AG129500 Rh7AG315400 Rh7BG130800 Rh7CG061100 Rh7CG134200 Rh7DG131700
rosa_wichuraiana	Rw4G027590 Rw7G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	203
AciI	CCGC	3 cut(s)	130, 221, 311
AcoI	YGGCCR	3 cut(s)	9, 15, 163
AcsI	RAATTY	1 cut(s)	22
AcyI	GRCGYC	1 cut(s)	204
AdeI	CACNNNGTG	1 cut(s)	55
AgsI	TTSAA	1 cut(s)	281
AjiI	CACGTC	1 cut(s)	60
AleI	CACNNNNGTG	1 cut(s)	39
AluBI	AGCT	5 cut(s)	75, 252, 292, 318, 385
AluI	AGCT	5 cut(s)	75, 252, 292, 318, 385
Alw21I	GWGCWC	2 cut(s)	49, 320
Alw26I	GTCTC	2 cut(s)	142, 331
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	3 cut(s)	9, 15, 163
ApoI	RAATTY	1 cut(s)	22
AspA2I	CCTAGG	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	261
AsuC2I	CCSGG	1 cut(s)	296
AsuHPI	GGTGA	2 cut(s)	41, 103
AsuNHI	GCTAGC	1 cut(s)	385
AvaI	CYCGRG	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	261
AvrII	CCTAGG	1 cut(s)	37
BalI	TGGCCA	1 cut(s)	11
BanI	GGYRCC	1 cut(s)	203
BanII	GRGCYC	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	94
Bbv12I	GWGCWC	2 cut(s)	49, 320
BccI	CCATC	3 cut(s)	116, 233, 275
BceAI	ACGGC	2 cut(s)	30, 217
BcgI	CGANNNNNNTGC	2 cut(s)	8, 42
BcnI	CCSGG	1 cut(s)	296
BcoDI	GTCTC	2 cut(s)	142, 331
BfaI	CTAG	3 cut(s)	38, 53, 386
BfoI	RGCGCY	1 cut(s)	207
BisI	GCNGC	1 cut(s)	312
BlnI	CCTAGG	1 cut(s)	37
BlsI	GCNGC	1 cut(s)	313
Bme1390I	CCNGG	1 cut(s)	296
Bme18I	GGWCC	1 cut(s)	261
BmeT110I	CYCGRG	1 cut(s)	149
BmgBI	CACGTC	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	261
BmiI	GGNNCC	2 cut(s)	179, 205
BmrFI	CCNGG	1 cut(s)	296
BmtI	GCTAGC	1 cut(s)	389
BpiI	GAAGAC	1 cut(s)	94
BpuMI	CCSGG	1 cut(s)	296
BsaHI	GRCGYC	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	142
BsaJI	CCNNGG	3 cut(s)	12, 37, 390
BsaWI	WCCGGW	1 cut(s)	348
Bse1I	ACTGG	1 cut(s)	377
BseDI	CCNNGG	3 cut(s)	12, 37, 390
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	1 cut(s)	377
BseRI	GAGGAG	2 cut(s)	137, 170
BseX3I	CGGCCG	1 cut(s)	15
BseYI	CCCAGC	1 cut(s)	252
Bsh1285I	CGRYCG	2 cut(s)	18, 349
BshFI	GGCC	3 cut(s)	11, 17, 165
BshNI	GGYRCC	1 cut(s)	203
BsiEI	CGRYCG	2 cut(s)	18, 349
BsiHKAI	GWGCWC	2 cut(s)	49, 320
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	2 cut(s)	295, 349
BslFI	GGGAC	2 cut(s)	311, 353
BsmAI	GTCTC	2 cut(s)	142, 331
BsmBI	CGTCTC	1 cut(s)	331
BsmFI	GGGAC	2 cut(s)	311, 353
BsnI	GGCC	3 cut(s)	11, 17, 165
Bso31I	GGTCTC	1 cut(s)	142
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	2 cut(s)	49, 320
BspACI	CCGC	3 cut(s)	130, 221, 311
BspANI	GGCC	3 cut(s)	11, 17, 165
BspCNI	CTCAG	1 cut(s)	240
BspLI	GGNNCC	2 cut(s)	179, 205
BspOI	GCTAGC	1 cut(s)	389
BspT107I	GGYRCC	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	377
BssECI	CCNNGG	3 cut(s)	12, 37, 390
BssNI	GRCGYC	1 cut(s)	204
BssT1I	CCWWGG	2 cut(s)	37, 390
BstACI	GRCGYC	1 cut(s)	204
BstC8I	GCNNGC	4 cut(s)	232, 316, 333, 387
BstDEI	CTNAG	2 cut(s)	190, 248
BstDSI	CCRYGG	1 cut(s)	12
BstH2I	RGCGCY	1 cut(s)	207
BstHHI	GCGC	1 cut(s)	206
BstMAI	GTCTC	2 cut(s)	142, 331
BstMCI	CGRYCG	2 cut(s)	18, 349
BstMWI	GCNNNNNNNGC	2 cut(s)	382, 395
BstSCI	CCNGG	1 cut(s)	294
BstV2I	GAAGAC	1 cut(s)	94
BstXI	CCANNNNNNTGG	2 cut(s)	41, 283
BstZI	CGGCCG	1 cut(s)	15
BsuRI	GGCC	3 cut(s)	11, 17, 165
BtgI	CCRYGG	1 cut(s)	12
BtgZI	GCGATG	2 cut(s)	211, 253
BtrI	CACGTC	1 cut(s)	60
Cac8I	GCNNGC	4 cut(s)	232, 316, 333, 387
CfoI	GCGC	1 cut(s)	206
Cfr13I	GGNCC	1 cut(s)	261
CviAII	CATG	1 cut(s)	169
DdeI	CTNAG	2 cut(s)	190, 248
DinI	GGCGCC	1 cut(s)	205
DraIII	CACNNNGTG	1 cut(s)	55
EaeI	YGGCCR	3 cut(s)	9, 15, 163
EagI	CGGCCG	1 cut(s)	15
Ecl136II	GAGCTC	1 cut(s)	318
EclXI	CGGCCG	1 cut(s)	15
Eco130I	CCWWGG	2 cut(s)	37, 390
Eco24I	GRGCYC	1 cut(s)	320
Eco31I	GGTCTC	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	261
Eco52I	CGGCCG	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	318
Eco88I	CYCGRG	1 cut(s)	149
EcoICRI	GAGCTC	1 cut(s)	318
EcoT14I	CCWWGG	2 cut(s)	37, 390
EcoT38I	GRGCYC	1 cut(s)	320
EgeI	GGCGCC	1 cut(s)	205
EheI	GGCGCC	1 cut(s)	205
ErhI	CCWWGG	2 cut(s)	37, 390
Esp3I	CGTCTC	1 cut(s)	331
FaeI	CATG	1 cut(s)	172
FaiI	YATR	1 cut(s)	170
FaqI	GGGAC	2 cut(s)	311, 353
FatI	CATG	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	312
FriOI	GRGCYC	1 cut(s)	320
Fsp4HI	GCNGC	1 cut(s)	312
FspBI	CTAG	3 cut(s)	38, 53, 386
GlaI	GCGC	1 cut(s)	205
GluI	GCNGC	1 cut(s)	312
GsaI	CCCAGC	1 cut(s)	256
HaeII	RGCGCY	1 cut(s)	207
HaeIII	GGCC	3 cut(s)	11, 17, 165
HapII	CCGG	2 cut(s)	295, 349
HhaI	GCGC	1 cut(s)	206
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	1 cut(s)	172
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HinfI	GANTC	3 cut(s)	152, 244, 303
HpaII	CCGG	2 cut(s)	295, 349
HphI	GGTGA	2 cut(s)	41, 103
Hpy188I	TCNGA	1 cut(s)	249
Hpy99I	CGWCG	1 cut(s)	203
HpyCH4IV	ACGT	2 cut(s)	59, 87
HpyF10VI	GCNNNNNNNGC	2 cut(s)	382, 395
HpyF3I	CTNAG	2 cut(s)	190, 248
HpySE526I	ACGT	2 cut(s)	59, 87
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	1 cut(s)	172
HspAI	GCGC	1 cut(s)	204
KasI	GGCGCC	1 cut(s)	203
LmnI	GCTCC	2 cut(s)	183, 297
LpnPI	CCDG	9 cut(s)	83, 238, 244, 244, 308, 317, 362, 390, 395
MaeI	CTAG	3 cut(s)	38, 53, 386
MaeII	ACGT	2 cut(s)	59, 87
MaeIII	GTNAC	1 cut(s)	55
MboII	GAAGA	2 cut(s)	94, 370
MhlI	GDGCHC	2 cut(s)	49, 320
MlsI	TGGCCA	1 cut(s)	11
MluCI	AATT	2 cut(s)	22, 363
MluNI	TGGCCA	1 cut(s)	11
Mly113I	GGCGCC	1 cut(s)	204
MlyI	GAGTC	2 cut(s)	161, 312
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	7 cut(s)	155, 158, 166, 191, 221, 274, 301
Mox20I	TGGCCA	1 cut(s)	11
MscI	TGGCCA	1 cut(s)	11
MslI	CAYNNNNRTG	2 cut(s)	39, 281
Msp20I	TGGCCA	1 cut(s)	11
MspI	CCGG	2 cut(s)	295, 349
MspR9I	CCNGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	2 cut(s)	382, 395
NarI	GGCGCC	1 cut(s)	204
NciI	CCSGG	1 cut(s)	296
NheI	GCTAGC	1 cut(s)	385
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	2 cut(s)	179, 205
NmuCI	GTSAC	1 cut(s)	55
OliI	CACNNNNGTG	1 cut(s)	39
PaeR7I	CTCGAG	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	244
PflFI	GACNNNGTC	1 cut(s)	302
PfoI	TCCNGGA	1 cut(s)	294
PkrI	GCNGC	1 cut(s)	313
PleI	GAGTC	2 cut(s)	160, 311
PluTI	GGCGCC	1 cut(s)	207
PpsI	GAGTC	2 cut(s)	160, 311
Psp124BI	GAGCTC	1 cut(s)	320
PspFI	CCCAGC	1 cut(s)	252
PspN4I	GGNNCC	2 cut(s)	179, 205
PspPI	GGNCC	1 cut(s)	261
PspXI	VCTCGAGB	1 cut(s)	149
PsrI	GAACNNNNNNTAC	2 cut(s)	59, 91
PsyI	GACNNNGTC	1 cut(s)	302
RseI	CAYNNNNRTG	2 cut(s)	39, 281
SacI	GAGCTC	1 cut(s)	320
SatI	GCNGC	1 cut(s)	312
Sau96I	GGNCC	1 cut(s)	261
SchI	GAGTC	2 cut(s)	161, 312
ScrFI	CCNGG	1 cut(s)	296
SduI	GDGCHC	2 cut(s)	49, 320
SfoI	GGCGCC	1 cut(s)	205
Sfr274I	CTCGAG	1 cut(s)	149
SinI	GGWCC	1 cut(s)	261
SlaI	CTCGAG	1 cut(s)	149
SmiMI	CAYNNNNRTG	2 cut(s)	39, 281
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	2 cut(s)	22, 363
SsiI	CCGC	3 cut(s)	130, 221, 311
SspDI	GGCGCC	1 cut(s)	203
SspMI	CTAG	3 cut(s)	38, 53, 386
SstI	GAGCTC	1 cut(s)	320
StyD4I	CCNGG	1 cut(s)	294
StyI	CCWWGG	2 cut(s)	37, 390
TaiI	ACGT	2 cut(s)	62, 90
TaqI	TCGA	4 cut(s)	150, 198, 306, 403
TasI	AATT	2 cut(s)	22, 363
TauI	GCSGC	1 cut(s)	314
TfiI	GAWTC	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	17, 185
TspGWI	ACGGA	2 cut(s)	83, 175
Tth111I	GACNNNGTC	1 cut(s)	302
VpaK11BI	GGWCC	1 cut(s)	261
XapI	RAATTY	1 cut(s)	22
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280
XhoI	CTCGAG	1 cut(s)	149
XmaJI	CCTAGG	1 cut(s)	37
XspI	CTAG	3 cut(s)	38, 53, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.