Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001438

Physical Location & Seq

Genomic Coordinates Reverse (-)

35958958 .. 35959428

Gene Structure 471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19517

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAAGTGGCTCCTCTCCGTCTTCGAGTCCGACGACGCCAACCTCTCCCTGCCGCCCATCGCCAGCAACGACCCAATTCTAAGCTGGGTCTTGTCCTACATCGCCACCATTCAGATGGGTCAGCTCCGGGACCGAGTCAAGGCGGTGAGTTCACTCGTCTCGCTGGCAAGGGACAACGACCAGAACAAGAAGATAATTGTTGACGAGGGAGGAGTGACGCTGCTGCTTAAGCTTTTGAAAGAGGGGTCTTCGGTGGAGGAACAGAATGTTGAGGCGTATGCTTTATTTCATATCGCTACAAACCAGGAGAGGGTTTGGATTATAATTGAGTTCAATAGGATTCTGATGATAGTTTCGGTTTTGGGGGAGTCGCCGATGAGGGTTCAGATGTGGAAATTGAATGATACAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008285 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

137

Amino Acids

15.48

Weight (kDa)

4.95

Isoelectric Point (pI)

30.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_PUB	PF25598	41 - 88	4.1e-06	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26600 AT3G26600
fragaria_vesca	FvH4_4g25480 FvH4_5g06080
malus_domestica	MD06G1167100.v1.1 MD13G1102400.v1.1 MD14G1172700.v1.1 MD16G1102800.v1.1
prunus_persica	Prupe.1G089500_v2.0.a1 Prupe.1G243400_v2.0.a1 Prupe.5G166900_v2.0.a1
pyrus_communis	pycom06g14970 pycom06g14980 pycom13g08950 pycom14g14410 pycom16g08740
rosa_chinensis	RchiOBHm_Chr4g0423211 RchiOBHm_Chr4g0432811 RchiOBHm_Chr7g0192761 RchiOBHm_Chr7g0218041
rosa_laevigata	RLG00000004331 RLG00000006810
rosa_multiflora	Rmu_co8276235.1_g000001 Rmu_sc0001516.1_g000053 Rmu_sc0004101.1_g000049 Rmu_sc0005234.1_g000003 Rmu_sc0008148.1_g000037
rosa_roxburghii	Rroxscaffold_2G00090530 Rroxscaffold_3G00262710 Rroxscaffold_5G00374250 Rroxscaffold_7G00212840
rosa_rugosa	Rorug04G0263100 Rorug07G0004500
rosa_samantha	Rh1AG125500 Rh2AG461900 Rh2CG448900 Rh4AG317200 Rh4AG322300 Rh4BG325400 Rh4CG340300 Rh4DG320600 Rh4DG326400 Rh5BG349900 Rh5CG383400 Rh7AG129500 Rh7AG315400 Rh7BG130800 Rh7CG061100 Rh7CG134200 Rh7DG131700
rosa_wichuraiana	Rw4G027590 Rw7G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	323
AciI	CCGC	2 cut(s)	53, 143
AcyI	GRCGYC	1 cut(s)	36
AfiI	CCNNNNNNNGG	2 cut(s)	139, 310
AflII	CTTAAG	1 cut(s)	227
AgsI	TTSAA	3 cut(s)	238, 334, 400
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	3 cut(s)	84, 124, 232
AluI	AGCT	3 cut(s)	84, 124, 232
Alw26I	GTCTC	1 cut(s)	163
ApeKI	GCWGC	2 cut(s)	220, 223
AspS9I	GGNCC	1 cut(s)	130
AsuC2I	CCSGG	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	157
AvaII	GGWCC	1 cut(s)	130
BbsI	GAAGAC	2 cut(s)	13, 240
BbvI	GCAGC	2 cut(s)	207, 210
BccI	CCATC	2 cut(s)	65, 109
BciT130I	CCWGG	1 cut(s)	305
BcnI	CCSGG	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	163
BfrI	CTTAAG	1 cut(s)	227
BisI	GCNGC	3 cut(s)	53, 221, 224
BlsI	GCNGC	3 cut(s)	54, 222, 225
Bme1390I	CCNGG	2 cut(s)	128, 305
Bme18I	GGWCC	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	2 cut(s)	11, 131
BmrFI	CCNGG	2 cut(s)	128, 305
BpiI	GAAGAC	2 cut(s)	13, 240
BpuMI	CCSGG	1 cut(s)	128
BsaHI	GRCGYC	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 310
BseBI	CCWGG	1 cut(s)	305
BseLI	CCNNNNNNNGG	2 cut(s)	139, 310
BseRI	GAGGAG	1 cut(s)	225
BseXI	GCAGC	2 cut(s)	207, 210
BseYI	CCCAGC	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	127
BslFI	GGGAC	2 cut(s)	143, 185
BslI	CCNNNNNNNGG	2 cut(s)	139, 310
BsmAI	GTCTC	1 cut(s)	163
BsmBI	CGTCTC	1 cut(s)	163
BsmFI	GGGAC	2 cut(s)	143, 185
BspACI	CCGC	2 cut(s)	53, 143
BspLI	GGNNCC	2 cut(s)	11, 131
BspTI	CTTAAG	1 cut(s)	227
BssNI	GRCGYC	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	1 cut(s)	409
BstACI	GRCGYC	1 cut(s)	36
BstAFI	CTTAAG	1 cut(s)	227
BstC8I	GCNNGC	2 cut(s)	64, 165
BstDEI	CTNAG	1 cut(s)	80
BstMAI	GTCTC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	1 cut(s)	229
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	2 cut(s)	126, 303
BstV1I	GCAGC	2 cut(s)	207, 210
BstV2I	GAAGAC	2 cut(s)	13, 240
BstXI	CCANNNNNNTGG	1 cut(s)	115
BtgZI	GCGATG	2 cut(s)	43, 85
Cac8I	GCNNGC	2 cut(s)	64, 165
Cfr13I	GGNCC	1 cut(s)	130
CseI	GACGC	2 cut(s)	44, 226
CviJI	RGCY	4 cut(s)	10, 84, 124, 232
CviKI_1	RGCY	4 cut(s)	10, 84, 124, 232
DdeI	CTNAG	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	303
Esp3I	CGTCTC	1 cut(s)	163
FaiI	YATR	3 cut(s)	279, 291, 323
FaqI	GGGAC	2 cut(s)	143, 185
Fnu4HI	GCNGC	3 cut(s)	53, 221, 224
Fsp4HI	GCNGC	3 cut(s)	53, 221, 224
GluI	GCNGC	3 cut(s)	53, 221, 224
GsaI	CCCAGC	1 cut(s)	88
HapII	CCGG	1 cut(s)	127
HgaI	GACGC	2 cut(s)	44, 226
Hin1I	GRCGYC	1 cut(s)	36
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	4 cut(s)	26, 135, 340, 368
HpaII	CCGG	1 cut(s)	127
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	2 cut(s)	152, 202
Hpy188I	TCNGA	4 cut(s)	31, 114, 345, 387
Hpy8I	GTNNAC	2 cut(s)	152, 202
Hpy99I	CGWCG	2 cut(s)	35, 38
HpyCH4III	ACNGT	1 cut(s)	409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	229
HpyF3I	CTNAG	1 cut(s)	80
Hsp92I	GRCGYC	1 cut(s)	36
LmnI	GCTCC	2 cut(s)	15, 129
LpnPI	CCDG	8 cut(s)	62, 70, 76, 140, 149, 194, 290, 317
Lsp1109I	GCAGC	2 cut(s)	207, 210
MaeIII	GTNAC	1 cut(s)	214
MboII	GAAGA	3 cut(s)	13, 202, 240
MluCI	AATT	4 cut(s)	75, 195, 324, 395
MlyI	GAGTC	3 cut(s)	35, 144, 377
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	9 cut(s)	23, 53, 199, 203, 235, 250, 265, 303, 372
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	113
MspCI	CTTAAG	1 cut(s)	227
MspI	CCGG	1 cut(s)	127
MspR9I	CCNGG	2 cut(s)	128, 305
MvaI	CCWGG	1 cut(s)	305
MwoI	GCNNNNNNNGC	1 cut(s)	229
NciI	CCSGG	1 cut(s)	128
NlaIV	GGNNCC	2 cut(s)	11, 131
NmuCI	GTSAC	1 cut(s)	214
PcsI	WCGNNNNNNNCGW	2 cut(s)	30, 66
PfeI	GAWTC	1 cut(s)	340
PflFI	GACNNNGTC	1 cut(s)	134
PfoI	TCCNGGA	1 cut(s)	126
PkrI	GCNGC	3 cut(s)	54, 222, 225
PleI	GAGTC	3 cut(s)	34, 143, 376
PpsI	GAGTC	3 cut(s)	34, 143, 376
PsiI	TTATAA	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	303
PspFI	CCCAGC	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	2 cut(s)	11, 131
PspPI	GGNCC	1 cut(s)	130
PsyI	GACNNNGTC	1 cut(s)	134
RseI	CAYNNNNRTG	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	3 cut(s)	53, 221, 224
Sau96I	GGNCC	1 cut(s)	130
SchI	GAGTC	3 cut(s)	35, 144, 377
ScrFI	CCNGG	2 cut(s)	128, 305
SetI	ASST	4 cut(s)	45, 86, 126, 234
SinI	GGWCC	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	4 cut(s)	75, 195, 324, 395
SsiI	CCGC	2 cut(s)	53, 143
StyD4I	CCNGG	2 cut(s)	126, 303
TaaI	ACNGT	1 cut(s)	409
TaqI	TCGA	1 cut(s)	24
TaqII	GACCGA	1 cut(s)	147
TasI	AATT	4 cut(s)	75, 195, 324, 395
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	1 cut(s)	340
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	2 cut(s)	220, 223
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	2 cut(s)	17, 278
TspGWI	ACGGA	1 cut(s)	7
Tth111I	GACNNNGTC	1 cut(s)	134
Vha464I	CTTAAG	1 cut(s)	227
VpaK11BI	GGWCC	1 cut(s)	130
XcmI	CCANNNNNNNNNTGG	2 cut(s)	81, 112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.