Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001438

Physical Location & Seq

Genomic Coordinates Forward (+)

9709097 .. 9711901

Gene Structure 2805 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG130800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1845 bp

ATGGCCGCCACCGCCGCCGCCGAAAATGACGAAAAGACCCTCCAAGAGGAGCTGTCCCTCCCCATCCTCCTCGCGGATCGGGTCCTCAAGTCGGCCCACGAGGCCGAGTCCTCCAAGCCCGAGTGCGCCGACCTGGCCCACCAAGTCGACCGCCTCTCCCAGATGCTCCGATCCGCCGTCCGGATCGCCGCCGCCTCCCCCTCCCTCTACGAGCGCCCCGTCCGACGCATCGCCGCCGACGTGGCCAAGAACCTGGACCGCGCCCTCACCCTCGTCCGCAAGTGCAAGCACAGCGGCGTCCTCCGCCAGGTCTTCTCCATCACCACCACCGCCGACTTCCGCAAGGTGTCCAACCTCCTCGAGTCCTCGATCGGCGACATGAAGTGGCTCCTCTCCGTCTTCGAGTCCGACGGCGCCAACCTCTCCCTGCCGCCCATCGCCAGCAACGACCCGATTCTGAGCTGGGTCTGGTCGTACATCGCCACCATTCAGATGGGTCAGCTCCGGGACCGAGTGGAGGCGGCGAGTTCGCTCGTCTCGCTGGCGAGGGACAACGACCGGAACAAGAAGATAATTGTGGACGAGGGAGGAGTGACGCCGCTGCTCAAGCTTTTGAAAGAGGGGTCTTCGGCGGAGGCACAGATTGCTGCGGCGAATGCTCTGTTTCACATCGCTACGGACCGGGAGAGGGTTCGGACTGTAATCGAGTTGAATGGGATTCCGATGATAGTTTCGGTCTTGGGGGATTCGCCGATGAGGGTTCAGGCGGCGGTGGTGAGATTGGTGGCGGAAATGGCGGAGCTTGACCCGATTGCGCAGGAGGACTTTGCTAGAGAAAATGTGACTAGGCCGTTGGTGTCTCTGTTGGCTATGGATACGGTTTTGGATGAGCCGAAACCGCAGTCGGGTAAGCCCAGCATTCATTCGCTTGTGATTAATAAGGAGTTGGTAGGAAAGGGGGCGAATTCGAGTAGTAGGTTGGGGTCGTTTAGTTCGAATCATTATCATTCTGATGGGAGTAGTAGAGGTGGGCATTATAGGAAAGATAGGGAGAGAGAGGTTGAGAGCCCTGAGGTGAAGCTCAAGCTCAAGGTCGGTTGTGCTGAGGCATTGTGGAAGTTGTGTAGATATTGTTTGTTGAATAGTCGAAAAGTTACAGAGACTAAAGGGTTGATTTGTTTGGCGAAGATTGTTGAGAAGGAAGTTGGGGAATTGCAGCTTAATTGCTTGATGACTGTGATGGAAATAGCTGCAGTGGCAGAGTCAAATCCAGAGCTTAGACGATCGGCTTTTAAGCCCAACTCTCCGGCTGCAAAGGCAGTTGTCGATCAGCTTATGAGGGTTATTCAAGAAGAGAGTAACCCGGATCTGCAAATACCGGCAATCAAGGCAATTGGGTCACTCGCAAGAACTTTTGCCGCCAGGGAAACCCGGATAGTTGGTCCTTTGGTTGCGCGGCTGGGTAATGAGAATGTGGATGTGGCAACTGAGGCTGCCATTGCATTGGAAAAGTTTGTGTGTTTGGAGAACTTCAACCGAGTAGAGCATTCCAAGACGATAATTGAGTTTGATGGGGTTCCTTCTCTGATGAGATTGTTGAAGGCTACTGATCGGACCAACGAACTTGCTCACATGCACTGCCTAGAACTATTATGTTACCTCGCATTGCACGTAGGCAATAGCAAAGCTCTTGAACAAGCACAGGTGTTGAGTACTCTCGAGGGGGGAGCTCGTTCTGCTGTGGCACAAAATCCAGATTTGAAGGAGTTGTTTTTCAAAGCCATACACCATCTCAGTCTTTATCAGCCTGGAGCTCATCCCCACAGGCAAACCTACATGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008285 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

614

Amino Acids

67.36

Weight (kDa)

6.98

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7792	PF25055	15 - 134	2.8e-50	Domain of unknown function (DUF7792)
ARM_PUB	PF25598	168 - 448	5e-06	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26600 AT3G26600
fragaria_vesca	FvH4_4g25480 FvH4_5g06080
malus_domestica	MD06G1167100.v1.1 MD13G1102400.v1.1 MD14G1172700.v1.1 MD16G1102800.v1.1
prunus_persica	Prupe.1G089500_v2.0.a1 Prupe.1G243400_v2.0.a1 Prupe.5G166900_v2.0.a1
pyrus_communis	pycom06g14970 pycom06g14980 pycom13g08950 pycom14g14410 pycom16g08740
rosa_chinensis	RchiOBHm_Chr4g0423211 RchiOBHm_Chr4g0432811 RchiOBHm_Chr7g0192761 RchiOBHm_Chr7g0218041
rosa_laevigata	RLG00000004331 RLG00000006810
rosa_multiflora	Rmu_co8276235.1_g000001 Rmu_sc0001516.1_g000053 Rmu_sc0004101.1_g000049 Rmu_sc0005234.1_g000003 Rmu_sc0008148.1_g000037
rosa_roxburghii	Rroxscaffold_2G00090530 Rroxscaffold_3G00262710 Rroxscaffold_5G00374250 Rroxscaffold_7G00212840
rosa_rugosa	Rorug04G0263100 Rorug07G0004500
rosa_samantha	Rh1AG125500 Rh2AG461900 Rh2CG448900 Rh4AG317200 Rh4AG322300 Rh4BG325400 Rh4CG340300 Rh4DG320600 Rh4DG326400 Rh5BG349900 Rh5CG383400 Rh7AG129500 Rh7AG315400 Rh7BG130800 Rh7CG061100 Rh7CG134200 Rh7DG131700
rosa_wichuraiana	Rw4G027590 Rw7G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	816
AccB1I	GGYRCC	1 cut(s)	413
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	3 cut(s)	74, 261, 1456
AccIII	TCCGGA	1 cut(s)	180
AclWI	GGATC	4 cut(s)	84, 165, 191, 1374
AcoI	YGGCCR	2 cut(s)	3, 243
AcsI	RAATTY	1 cut(s)	964
AcyI	GRCGYC	3 cut(s)	297, 414, 596
AfaI	GTAC	2 cut(s)	476, 1714
AfiI	CCNNNNNNNGG	8 cut(s)	46, 73, 91, 180, 307, 517, 688, 905
AgsI	TTSAA	9 cut(s)	616, 712, 1141, 1349, 1534, 1600, 1694, 1762, 1777
AjiI	CACGTC	1 cut(s)	241
AjnI	CCWGG	5 cut(s)	132, 252, 306, 1421, 1807
Alw21I	GWGCWC	2 cut(s)	1732, 1816
Alw26I	GTCTC	3 cut(s)	541, 864, 1154
AlwI	GGATC	4 cut(s)	84, 165, 191, 1374
Ama87I	CYCGRG	3 cut(s)	119, 359, 1718
Aor13HI	TCCGGA	1 cut(s)	180
AoxI	GGCC	6 cut(s)	3, 93, 102, 135, 243, 848
ApeKI	GCWGC	6 cut(s)	601, 647, 1216, 1250, 1310, 1493
ApoI	RAATTY	1 cut(s)	964
ArsI	GACNNNNNNTTYG	2 cut(s)	887, 919
AseI	ATTAAT	1 cut(s)	936
AspLEI	GCGC	6 cut(s)	128, 216, 263, 416, 817, 1456
AspS9I	GGNCC	8 cut(s)	82, 94, 136, 256, 508, 679, 1442, 1614
AsuC2I	CCSGG	4 cut(s)	506, 683, 1364, 1432
AsuHPI	GGTGA	4 cut(s)	259, 313, 787, 1087
AsuII	TTCGAA	1 cut(s)	995
AvaI	CYCGRG	3 cut(s)	119, 359, 1718
AvaII	GGWCC	6 cut(s)	82, 256, 508, 679, 1442, 1614
AxyI	CCTNAGG	1 cut(s)	1071
BalI	TGGCCA	1 cut(s)	245
BanI	GGYRCC	1 cut(s)	413
BanII	GRGCYC	3 cut(s)	1070, 1732, 1816
BauI	CACGAG	1 cut(s)	98
BbsI	GAAGAC	3 cut(s)	304, 391, 618
Bbv12I	GWGCWC	2 cut(s)	1732, 1816
BbvCI	CCTCAGC	1 cut(s)	1104
BbvI	GCAGC	6 cut(s)	588, 634, 1228, 1237, 1297, 1480
BccI	CCATC	8 cut(s)	71, 326, 443, 487, 1007, 1234, 1565, 1797
BceAI	ACGGC	3 cut(s)	161, 427, 835
BciT130I	CCWGG	5 cut(s)	134, 254, 308, 1423, 1809
BciVI	GTATCC	1 cut(s)	868
BcnI	CCSGG	4 cut(s)	506, 683, 1364, 1432
BcoDI	GTCTC	3 cut(s)	541, 864, 1154
BfaI	CTAG	3 cut(s)	831, 846, 1643
BfmI	CTRYAG	1 cut(s)	1251
BfoI	RGCGCY	2 cut(s)	217, 417
BfuI	GTATCC	1 cut(s)	868
BglI	GCCNNNNNGGC	3 cut(s)	101, 134, 242
BmcAI	AGTACT	1 cut(s)	1714
Bme1390I	CCNGG	9 cut(s)	134, 254, 308, 506, 683, 1364, 1423, 1432, 1809
Bme18I	GGWCC	6 cut(s)	82, 256, 508, 679, 1442, 1614
BmeT110I	CYCGRG	3 cut(s)	119, 359, 1718
BmgBI	CACGTC	1 cut(s)	241
BmgT120I	GGNCC	8 cut(s)	82, 94, 136, 256, 508, 679, 1442, 1614
BmiI	GGNNCC	5 cut(s)	83, 389, 415, 509, 1578
BmrFI	CCNGG	9 cut(s)	134, 254, 308, 506, 683, 1364, 1423, 1432, 1809
BmsI	GCATC	2 cut(s)	153, 237
BpiI	GAAGAC	3 cut(s)	304, 391, 618
BpmI	CTGGAG	1 cut(s)	1830
Bpu10I	CCTNAGC	1 cut(s)	1104
Bpu14I	TTCGAA	1 cut(s)	995
BpuEI	CTTGAG	4 cut(s)	71, 590, 1067, 1073
BpuMI	CCSGG	4 cut(s)	506, 683, 1364, 1432
BsaAI	YACGTR	1 cut(s)	1672
BsaHI	GRCGYC	3 cut(s)	297, 414, 596
BsaJI	CCNNGG	1 cut(s)	1422
BsaWI	WCCGGW	2 cut(s)	180, 558
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	8 cut(s)	46, 73, 91, 180, 307, 517, 688, 905
Bse118I	RCCGGY	1 cut(s)	1378
Bse21I	CCTNAGG	1 cut(s)	1071
Bse3DI	GCAATG	2 cut(s)	1497, 1664
BseAI	TCCGGA	1 cut(s)	180
BseBI	CCWGG	5 cut(s)	134, 254, 308, 1423, 1809
BseDI	CCNNGG	1 cut(s)	1422
BseGI	GGATG	4 cut(s)	63, 892, 1483, 1816
BseLI	CCNNNNNNNGG	8 cut(s)	46, 73, 91, 180, 307, 517, 688, 905
BseMI	GCAATG	2 cut(s)	1497, 1664
BseMII	CTCAG	5 cut(s)	449, 1062, 1095, 1479, 1807
BseRI	GAGGAG	5 cut(s)	59, 62, 347, 380, 603
BseXI	GCAGC	6 cut(s)	588, 634, 1228, 1237, 1297, 1480
BseYI	CCCAGC	3 cut(s)	462, 914, 1459
Bsh1236I	CGCG	3 cut(s)	74, 261, 1456
Bsh1285I	CGRYCG	4 cut(s)	151, 372, 559, 1286
BshFI	GGCC	6 cut(s)	5, 95, 104, 137, 245, 850
BshNI	GGYRCC	1 cut(s)	413
BsiEI	CGRYCG	4 cut(s)	151, 372, 559, 1286
BsiHKAI	GWGCWC	2 cut(s)	1732, 1816
BsiHKCI	CYCGRG	3 cut(s)	119, 359, 1718
BsiSI	CCGG	8 cut(s)	181, 505, 559, 682, 1307, 1364, 1379, 1432
BslFI	GGGAC	3 cut(s)	40, 521, 563
BslI	CCNNNNNNNGG	8 cut(s)	46, 73, 91, 180, 307, 517, 688, 905
BsmAI	GTCTC	3 cut(s)	541, 864, 1154
BsmBI	CGTCTC	1 cut(s)	541
BsmFI	GGGAC	3 cut(s)	40, 521, 563
BsmI	GAATGC	3 cut(s)	661, 918, 1546
BsnI	GGCC	6 cut(s)	5, 95, 104, 137, 245, 850
BsoBI	CYCGRG	3 cut(s)	119, 359, 1718
Bsp119I	TTCGAA	1 cut(s)	995
Bsp1286I	GDGCHC	3 cut(s)	1070, 1732, 1816
Bsp13I	TCCGGA	1 cut(s)	180
Bsp143I	GATC	8 cut(s)	76, 170, 183, 369, 1283, 1327, 1366, 1609
BspANI	GGCC	6 cut(s)	5, 95, 104, 137, 245, 850
BspCNI	CTCAG	5 cut(s)	450, 1063, 1096, 1480, 1806
BspEI	TCCGGA	1 cut(s)	180
BspFNI	CGCG	3 cut(s)	74, 261, 1456
BspLI	GGNNCC	5 cut(s)	83, 389, 415, 509, 1578
BspMAI	CTGCAG	1 cut(s)	1255
BspPI	GGATC	4 cut(s)	84, 165, 191, 1374
BspT104I	TTCGAA	1 cut(s)	995
BspT107I	GGYRCC	1 cut(s)	413
BsrDI	GCAATG	2 cut(s)	1497, 1664
BsrFI	RCCGGY	1 cut(s)	1378
BssAI	RCCGGY	1 cut(s)	1378
BssECI	CCNNGG	1 cut(s)	1422
BssMI	GATC	8 cut(s)	76, 170, 183, 369, 1283, 1327, 1366, 1609
BssNI	GRCGYC	3 cut(s)	297, 414, 596
BssSI	CACGAG	1 cut(s)	98
Bst2BI	CACGAG	1 cut(s)	98
Bst2UI	CCWGG	5 cut(s)	134, 254, 308, 1423, 1809
Bst4CI	ACNGT	3 cut(s)	700, 880, 1237
Bst6I	CTCTTC	1 cut(s)	1347
BstACI	GRCGYC	3 cut(s)	297, 414, 596
BstAPI	GCANNNNNTGC	1 cut(s)	644
BstBAI	YACGTR	1 cut(s)	1672
BstBI	TTCGAA	1 cut(s)	995
BstC8I	GCNNGC	3 cut(s)	287, 442, 543
BstDEI	CTNAG	6 cut(s)	458, 1071, 1104, 1277, 1488, 1793
BstENI	CCTNNNNNAGG	2 cut(s)	44, 305
BstF5I	GGATG	4 cut(s)	63, 892, 1483, 1816
BstFNI	CGCG	3 cut(s)	74, 261, 1456
BstH2I	RGCGCY	2 cut(s)	217, 417
BstHHI	GCGC	6 cut(s)	128, 216, 263, 416, 817, 1456
BstKTI	GATC	8 cut(s)	79, 173, 186, 372, 1286, 1330, 1369, 1612
BstMAI	GTCTC	3 cut(s)	541, 864, 1154
BstMBI	GATC	8 cut(s)	76, 170, 183, 369, 1283, 1327, 1366, 1609
BstMCI	CGRYCG	4 cut(s)	151, 372, 559, 1286
BstNI	CCWGG	5 cut(s)	134, 254, 308, 1423, 1809
BstNSI	RCATGY	2 cut(s)	1636, 1840
BstSCI	CCNGG	9 cut(s)	132, 252, 306, 504, 681, 1362, 1421, 1430, 1807
BstSFI	CTRYAG	1 cut(s)	1251
BstUI	CGCG	3 cut(s)	74, 261, 1456
BstV1I	GCAGC	6 cut(s)	588, 634, 1228, 1237, 1297, 1480
BstV2I	GAAGAC	3 cut(s)	304, 391, 618
BstX2I	RGATCY	1 cut(s)	1366
BstXI	CCANNNNNNTGG	3 cut(s)	253, 493, 1504
BstYI	RGATCY	1 cut(s)	1366
Bsu36I	CCTNAGG	1 cut(s)	1071
BsuI	GTATCC	1 cut(s)	868
BsuRI	GGCC	6 cut(s)	5, 95, 104, 137, 245, 850
BtgZI	GCGATG	4 cut(s)	214, 421, 463, 655
BtrI	CACGTC	1 cut(s)	241
BtsCI	GGATG	4 cut(s)	63, 892, 1483, 1816
BtsI	GCAGTG	2 cut(s)	1260, 1636
BtsIMutI	CAGTG	2 cut(s)	1260, 1636
Cac8I	GCNNGC	3 cut(s)	287, 442, 543
CfoI	GCGC	6 cut(s)	128, 216, 263, 416, 817, 1456
Cfr10I	RCCGGY	1 cut(s)	1378
Cfr13I	GGNCC	8 cut(s)	82, 94, 136, 256, 508, 679, 1442, 1614
CpoI	CGGWCCG	1 cut(s)	679
CseI	GACGC	3 cut(s)	234, 286, 604
Csp6I	GTAC	2 cut(s)	475, 1713
CspI	CGGWCCG	1 cut(s)	679
CviAII	CATG	4 cut(s)	379, 1633, 1837, 1842
CviQI	GTAC	2 cut(s)	475, 1713
DdeI	CTNAG	6 cut(s)	458, 1071, 1104, 1277, 1488, 1793
DinI	GGCGCC	1 cut(s)	415
DpnI	GATC	8 cut(s)	78, 172, 185, 371, 1285, 1329, 1368, 1611
DpnII	GATC	8 cut(s)	76, 170, 183, 369, 1283, 1327, 1366, 1609
EaeI	YGGCCR	2 cut(s)	3, 243
Eam1104I	CTCTTC	1 cut(s)	1347
EarI	CTCTTC	1 cut(s)	1347
EciI	GGCGGA	5 cut(s)	163, 293, 647, 803, 812
Ecl136II	GAGCTC	2 cut(s)	1730, 1814
Eco24I	GRGCYC	3 cut(s)	1070, 1732, 1816
Eco47I	GGWCC	6 cut(s)	82, 256, 508, 679, 1442, 1614
Eco53kI	GAGCTC	2 cut(s)	1730, 1814
Eco81I	CCTNAGG	1 cut(s)	1071
Eco88I	CYCGRG	3 cut(s)	119, 359, 1718
EcoICRI	GAGCTC	2 cut(s)	1730, 1814
EcoNI	CCTNNNNNAGG	2 cut(s)	44, 305
EcoO109I	RGGNCCY	1 cut(s)	82
EcoRI	GAATTC	1 cut(s)	964
EcoRII	CCWGG	5 cut(s)	132, 252, 306, 1421, 1807
EcoT38I	GRGCYC	3 cut(s)	1070, 1732, 1816
EgeI	GGCGCC	1 cut(s)	415
EheI	GGCGCC	1 cut(s)	415
Esp3I	CGTCTC	1 cut(s)	541
FaeI	CATG	4 cut(s)	382, 1636, 1840, 1845
FaiI	YATR	9 cut(s)	380, 872, 1038, 1337, 1634, 1654, 1784, 1838, 1843
FaqI	GGGAC	3 cut(s)	40, 521, 563
FatI	CATG	4 cut(s)	378, 1632, 1836, 1841
FblI	GTMKAC	1 cut(s)	147
FokI	GGATG	4 cut(s)	50, 899, 1490, 1803
FriOI	GRGCYC	3 cut(s)	1070, 1732, 1816
FspBI	CTAG	3 cut(s)	831, 846, 1643
FspI	TGCGCA	1 cut(s)	816
GlaI	GCGC	6 cut(s)	127, 215, 262, 415, 816, 1455
GsaI	CCCAGC	3 cut(s)	466, 918, 1463
GsuI	CTGGAG	1 cut(s)	1830
HaeII	RGCGCY	2 cut(s)	217, 417
HaeIII	GGCC	6 cut(s)	5, 95, 104, 137, 245, 850
HapII	CCGG	8 cut(s)	181, 505, 559, 682, 1307, 1364, 1379, 1432
HgaI	GACGC	3 cut(s)	234, 286, 604
HhaI	GCGC	6 cut(s)	128, 216, 263, 416, 817, 1456
Hin1I	GRCGYC	3 cut(s)	297, 414, 596
Hin1II	CATG	4 cut(s)	382, 1636, 1840, 1845
Hin6I	GCGC	6 cut(s)	126, 214, 261, 414, 815, 1454
HinP1I	GCGC	6 cut(s)	126, 214, 261, 414, 815, 1454
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	608
HinfI	GANTC	8 cut(s)	107, 362, 404, 454, 718, 746, 997, 1262
HpaII	CCGG	8 cut(s)	181, 505, 559, 682, 1307, 1364, 1379, 1432
HphI	GGTGA	4 cut(s)	259, 313, 787, 1087
Hpy166II	GTNNAC	2 cut(s)	148, 580
Hpy188III	TCNNGA	6 cut(s)	181, 1271, 1349, 1691, 1718, 1754
Hpy8I	GTNNAC	2 cut(s)	148, 580
Hpy99I	CGWCG	3 cut(s)	228, 242, 413
HpyAV	CCTTC	4 cut(s)	1192, 1590, 1594, 1756
HpyCH4III	ACNGT	3 cut(s)	700, 880, 1237
HpyCH4IV	ACGT	2 cut(s)	240, 1671
HpyCH4V	TGCA	8 cut(s)	285, 1216, 1253, 1313, 1372, 1502, 1636, 1669
HpyF3I	CTNAG	6 cut(s)	458, 1071, 1104, 1277, 1488, 1793
HpySE526I	ACGT	2 cut(s)	240, 1671
Hsp92I	GRCGYC	3 cut(s)	297, 414, 596
Hsp92II	CATG	4 cut(s)	382, 1636, 1840, 1845
HspAI	GCGC	6 cut(s)	126, 214, 261, 414, 815, 1454
KasI	GGCGCC	1 cut(s)	413
Kpn2I	TCCGGA	1 cut(s)	180
Kzo9I	GATC	8 cut(s)	76, 170, 183, 369, 1283, 1327, 1366, 1609
LmnI	GCTCC	7 cut(s)	49, 171, 393, 507, 799, 1727, 1811
Lsp1109I	GCAGC	6 cut(s)	588, 634, 1228, 1237, 1297, 1480
LweI	GCATC	2 cut(s)	153, 237
MaeI	CTAG	3 cut(s)	831, 846, 1643
MaeII	ACGT	2 cut(s)	240, 1671
MaeIII	GTNAC	6 cut(s)	592, 841, 1153, 1358, 1398, 1655
MalI	GATC	8 cut(s)	78, 172, 185, 371, 1285, 1329, 1368, 1611
MboI	GATC	8 cut(s)	76, 170, 183, 369, 1283, 1327, 1366, 1609
MboII	GAAGA	6 cut(s)	304, 391, 580, 618, 1198, 1364
MfeI	CAATTG	1 cut(s)	1392
MflI	RGATCY	1 cut(s)	1366
MhlI	GDGCHC	3 cut(s)	1070, 1732, 1816
MlsI	TGGCCA	1 cut(s)	245
MluCI	AATT	6 cut(s)	573, 964, 1211, 1222, 1392, 1560
MluNI	TGGCCA	1 cut(s)	245
Mly113I	GGCGCC	1 cut(s)	414
MlyI	GAGTC	4 cut(s)	116, 371, 413, 1271
MmeI	TCCRAC	3 cut(s)	247, 375, 432
Mox20I	TGGCCA	1 cut(s)	245
MroI	TCCGGA	1 cut(s)	180
MscI	TGGCCA	1 cut(s)	245
MseI	TTAA	3 cut(s)	936, 1221, 1293
MslI	CAYNNNNRTG	2 cut(s)	491, 1011
Msp20I	TGGCCA	1 cut(s)	245
MspA1I	CMGCKG	2 cut(s)	294, 601
MspI	CCGG	8 cut(s)	181, 505, 559, 682, 1307, 1364, 1379, 1432
MspR9I	CCNGG	9 cut(s)	134, 254, 308, 506, 683, 1364, 1423, 1432, 1809
MunI	CAATTG	1 cut(s)	1392
Mva1269I	GAATGC	3 cut(s)	661, 918, 1546
MvaI	CCWGG	5 cut(s)	134, 254, 308, 1423, 1809
MvnI	CGCG	3 cut(s)	74, 261, 1456
NarI	GGCGCC	1 cut(s)	414
NciI	CCSGG	4 cut(s)	506, 683, 1364, 1432
NdeII	GATC	8 cut(s)	76, 170, 183, 369, 1283, 1327, 1366, 1609
NlaIII	CATG	4 cut(s)	382, 1636, 1840, 1845
NlaIV	GGNNCC	5 cut(s)	83, 389, 415, 509, 1578
NmeAIII	GCCGAG	1 cut(s)	130
NmuCI	GTSAC	3 cut(s)	592, 841, 1398
NsbI	TGCGCA	1 cut(s)	816
NspI	RCATGY	2 cut(s)	1636, 1840
NspV	TTCGAA	1 cut(s)	995
PaeR7I	CTCGAG	2 cut(s)	359, 1718
PcsI	WCGNNNNNNNCGW	5 cut(s)	216, 237, 444, 992, 1668
PctI	GAATGC	3 cut(s)	661, 918, 1546
PfeI	GAWTC	4 cut(s)	454, 718, 746, 997
PfoI	TCCNGGA	1 cut(s)	504
Ple19I	CGATCG	2 cut(s)	372, 1286
PleI	GAGTC	4 cut(s)	115, 370, 412, 1270
PluTI	GGCGCC	1 cut(s)	417
PpsI	GAGTC	4 cut(s)	115, 370, 412, 1270
Ppu21I	YACGTR	1 cut(s)	1672
PpuMI	RGGWCCY	1 cut(s)	82
PshBI	ATTAAT	1 cut(s)	936
Psp124BI	GAGCTC	2 cut(s)	1732, 1816
Psp5II	RGGWCCY	1 cut(s)	82
Psp6I	CCWGG	5 cut(s)	132, 252, 306, 1421, 1807
PspFI	CCCAGC	3 cut(s)	462, 914, 1459
PspGI	CCWGG	5 cut(s)	132, 252, 306, 1421, 1807
PspN4I	GGNNCC	5 cut(s)	83, 389, 415, 509, 1578
PspPI	GGNCC	8 cut(s)	82, 94, 136, 256, 508, 679, 1442, 1614
PspPPI	RGGWCCY	1 cut(s)	82
PspXI	VCTCGAGB	1 cut(s)	359
PstI	CTGCAG	1 cut(s)	1255
PsuI	RGATCY	1 cut(s)	1366
PvuI	CGATCG	2 cut(s)	372, 1286
RsaI	GTAC	2 cut(s)	476, 1714
RsaNI	GTAC	2 cut(s)	475, 1713
RseI	CAYNNNNRTG	2 cut(s)	491, 1011
Rsr2I	CGGWCCG	1 cut(s)	679
RsrII	CGGWCCG	1 cut(s)	679
SacI	GAGCTC	2 cut(s)	1732, 1816
SalI	GTCGAC	1 cut(s)	146
SaqAI	TTAA	3 cut(s)	936, 1221, 1293
Sau3AI	GATC	8 cut(s)	76, 170, 183, 369, 1283, 1327, 1366, 1609
Sau96I	GGNCC	8 cut(s)	82, 94, 136, 256, 508, 679, 1442, 1614
ScaI	AGTACT	1 cut(s)	1714
SchI	GAGTC	4 cut(s)	116, 371, 413, 1271
ScrFI	CCNGG	9 cut(s)	134, 254, 308, 506, 683, 1364, 1423, 1432, 1809
SduI	GDGCHC	3 cut(s)	1070, 1732, 1816
SfaNI	GCATC	2 cut(s)	153, 237
SfcI	CTRYAG	1 cut(s)	1251
SfiI	GGCCNNNNNGGCC	1 cut(s)	101
SfoI	GGCGCC	1 cut(s)	415
Sfr274I	CTCGAG	2 cut(s)	359, 1718
SfuI	TTCGAA	1 cut(s)	995
SinI	GGWCC	6 cut(s)	82, 256, 508, 679, 1442, 1614
SlaI	CTCGAG	2 cut(s)	359, 1718
SmiMI	CAYNNNNRTG	2 cut(s)	491, 1011
SmlI	CTYRAG	6 cut(s)	86, 359, 605, 1082, 1088, 1718
SmoI	CTYRAG	6 cut(s)	86, 359, 605, 1082, 1088, 1718
Sse9I	AATT	6 cut(s)	573, 964, 1211, 1222, 1392, 1560
SspDI	GGCGCC	1 cut(s)	413
SspMI	CTAG	3 cut(s)	831, 846, 1643
SstI	GAGCTC	2 cut(s)	1732, 1816
StyD4I	CCNGG	9 cut(s)	132, 252, 306, 504, 681, 1362, 1421, 1430, 1807
TaaI	ACNGT	3 cut(s)	700, 880, 1237
TaiI	ACGT	2 cut(s)	243, 1674
TaqII	GACCGA	2 cut(s)	525, 724
TasI	AATT	6 cut(s)	573, 964, 1211, 1222, 1392, 1560
TatI	WGTACW	1 cut(s)	1712
TfiI	GAWTC	4 cut(s)	454, 718, 746, 997
Tru1I	TTAA	3 cut(s)	936, 1221, 1293
Tru9I	TTAA	3 cut(s)	936, 1221, 1293
TscAI	CASTG	2 cut(s)	1260, 1643
TseFI	GTSAC	3 cut(s)	592, 841, 1398
TseI	GCWGC	6 cut(s)	601, 647, 1216, 1250, 1310, 1493
Tsp45I	GTSAC	3 cut(s)	592, 841, 1398
TspDTI	ATGAA	2 cut(s)	395, 911
TspGWI	ACGGA	2 cut(s)	385, 692
TspRI	CASTG	2 cut(s)	1260, 1643
VpaK11BI	GGWCC	6 cut(s)	82, 256, 508, 679, 1442, 1614
VspI	ATTAAT	1 cut(s)	936
XagI	CCTNNNNNAGG	2 cut(s)	44, 305
XapI	RAATTY	1 cut(s)	964
XceI	RCATGY	2 cut(s)	1636, 1840
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XhoI	CTCGAG	2 cut(s)	359, 1718
XmiI	GTMKAC	1 cut(s)	147
XspI	CTAG	3 cut(s)	831, 846, 1643
ZrmI	AGTACT	1 cut(s)	1714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.