Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001438

Physical Location & Seq

Genomic Coordinates Reverse (-)

35445134 .. 35447107

Gene Structure 1974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG315400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAAGTGGCTCCTCTCCGTCTTCGAGTCCGACGGCGCCAACCTCTCCCTGCCGCCCATCGCCAGCAACGACCCGATTCTAAGCTGGGTCTTGTCCTACATCGCCACCATTCAGATGGGTCAGCTCCGGGACCGAGTCAAGGCGGTGAGTTCACTCGTCTCGCTGGCAAGGGACAACGACCAGAACAAGAAGATAATTGTTGACGAGGGAGGAGTGACGCTGCTGCTTAAGCTTTTGAAAGAGGGGTCTTCGGTGGAGGAACAGAATGTTGCGGCGTATGCTTTATTTCATATCGCTACAGACCAGGAGAGGGTTCGGATTATAATCGAGTTCAATAGGATTCCGATGATAGTTTCGGTTTTTGGGGAGTCGCCGATGAGGGTTCAGAGAGGACCAAAAACTGCTGCAAAAACTCAGTTGCAGAGACTTATCAAAGAGCTTTTGAAAGAGGCAAGCTCCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008285 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

154

Amino Acids

17.13

Weight (kDa)

8.96

Isoelectric Point (pI)

30.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_PUB	PF25598	41 - 105	4.5e-06	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26600 AT3G26600
fragaria_vesca	FvH4_4g25480 FvH4_5g06080
malus_domestica	MD06G1167100.v1.1 MD13G1102400.v1.1 MD14G1172700.v1.1 MD16G1102800.v1.1
prunus_persica	Prupe.1G089500_v2.0.a1 Prupe.1G243400_v2.0.a1 Prupe.5G166900_v2.0.a1
pyrus_communis	pycom06g14970 pycom06g14980 pycom13g08950 pycom14g14410 pycom16g08740
rosa_chinensis	RchiOBHm_Chr4g0423211 RchiOBHm_Chr4g0432811 RchiOBHm_Chr7g0192761 RchiOBHm_Chr7g0218041
rosa_laevigata	RLG00000004331 RLG00000006810
rosa_multiflora	Rmu_co8276235.1_g000001 Rmu_sc0001516.1_g000053 Rmu_sc0004101.1_g000049 Rmu_sc0005234.1_g000003 Rmu_sc0008148.1_g000037
rosa_roxburghii	Rroxscaffold_2G00090530 Rroxscaffold_3G00262710 Rroxscaffold_5G00374250 Rroxscaffold_7G00212840
rosa_rugosa	Rorug04G0263100 Rorug07G0004500
rosa_samantha	Rh1AG125500 Rh2AG461900 Rh2CG448900 Rh4AG317200 Rh4AG322300 Rh4BG325400 Rh4CG340300 Rh4DG320600 Rh4DG326400 Rh5BG349900 Rh5CG383400 Rh7AG129500 Rh7AG315400 Rh7BG130800 Rh7CG061100 Rh7CG134200 Rh7DG131700
rosa_wichuraiana	Rw4G027590 Rw7G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	323, 463
AccB1I	GGYRCC	1 cut(s)	35
AciI	CCGC	3 cut(s)	53, 143, 272
AcyI	GRCGYC	1 cut(s)	36
AfiI	CCNNNNNNNGG	2 cut(s)	139, 310
AflII	CTTAAG	1 cut(s)	227
AgsI	TTSAA	3 cut(s)	238, 334, 445
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	5 cut(s)	84, 124, 232, 439, 456
AluI	AGCT	5 cut(s)	84, 124, 232, 439, 456
Alw26I	GTCTC	2 cut(s)	163, 418
ApeKI	GCWGC	3 cut(s)	220, 223, 404
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	2 cut(s)	130, 392
AsuC2I	CCSGG	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	157
AvaII	GGWCC	2 cut(s)	130, 392
BanI	GGYRCC	1 cut(s)	35
BbsI	GAAGAC	2 cut(s)	13, 240
BbvI	GCAGC	3 cut(s)	207, 210, 391
BccI	CCATC	2 cut(s)	65, 109
BceAI	ACGGC	1 cut(s)	49
BciT130I	CCWGG	1 cut(s)	305
BcnI	CCSGG	1 cut(s)	128
BcoDI	GTCTC	2 cut(s)	163, 418
BfmI	CTRYAG	1 cut(s)	297
BfoI	RGCGCY	1 cut(s)	39
BfrI	CTTAAG	1 cut(s)	227
BisI	GCNGC	5 cut(s)	53, 221, 224, 273, 405
BlsI	GCNGC	5 cut(s)	54, 222, 225, 274, 406
Bme1390I	CCNGG	2 cut(s)	128, 305
Bme18I	GGWCC	2 cut(s)	130, 392
BmgT120I	GGNCC	2 cut(s)	130, 392
BmiI	GGNNCC	3 cut(s)	11, 37, 131
BmrFI	CCNGG	2 cut(s)	128, 305
BpiI	GAAGAC	2 cut(s)	13, 240
BplI	GAGNNNNNCTC	1 cut(s)	440
BpuMI	CCSGG	1 cut(s)	128
BsaBI	GATNNNNATC	1 cut(s)	323
BsaHI	GRCGYC	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 310
Bse8I	GATNNNNATC	1 cut(s)	323
BseBI	CCWGG	1 cut(s)	305
BseJI	GATNNNNATC	1 cut(s)	323
BseLI	CCNNNNNNNGG	2 cut(s)	139, 310
BseMII	CTCAG	1 cut(s)	428
BseRI	GAGGAG	1 cut(s)	225
BseXI	GCAGC	3 cut(s)	207, 210, 391
BseYI	CCCAGC	1 cut(s)	84
BshNI	GGYRCC	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	127
BslFI	GGGAC	2 cut(s)	143, 185
BslI	CCNNNNNNNGG	2 cut(s)	139, 310
BsmAI	GTCTC	2 cut(s)	163, 418
BsmBI	CGTCTC	1 cut(s)	163
BsmFI	GGGAC	2 cut(s)	143, 185
BspACI	CCGC	3 cut(s)	53, 143, 272
BspCNI	CTCAG	1 cut(s)	427
BspLI	GGNNCC	3 cut(s)	11, 37, 131
BspT107I	GGYRCC	1 cut(s)	35
BspTI	CTTAAG	1 cut(s)	227
BssNI	GRCGYC	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	305
BstACI	GRCGYC	1 cut(s)	36
BstAFI	CTTAAG	1 cut(s)	227
BstC8I	GCNNGC	3 cut(s)	64, 165, 454
BstDEI	CTNAG	2 cut(s)	80, 414
BstH2I	RGCGCY	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	38
BstMAI	GTCTC	2 cut(s)	163, 418
BstMWI	GCNNNNNNNGC	2 cut(s)	229, 278
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	2 cut(s)	126, 303
BstSFI	CTRYAG	1 cut(s)	297
BstV1I	GCAGC	3 cut(s)	207, 210, 391
BstV2I	GAAGAC	2 cut(s)	13, 240
BstXI	CCANNNNNNTGG	1 cut(s)	115
BtgZI	GCGATG	2 cut(s)	43, 85
Cac8I	GCNNGC	3 cut(s)	64, 165, 454
CfoI	GCGC	1 cut(s)	38
Cfr13I	GGNCC	2 cut(s)	130, 392
CseI	GACGC	1 cut(s)	226
CviJI	RGCY	6 cut(s)	10, 84, 124, 232, 439, 456
CviKI_1	RGCY	6 cut(s)	10, 84, 124, 232, 439, 456
DdeI	CTNAG	2 cut(s)	80, 414
DinI	GGCGCC	1 cut(s)	37
Eco47I	GGWCC	2 cut(s)	130, 392
EcoRII	CCWGG	1 cut(s)	303
EgeI	GGCGCC	1 cut(s)	37
EheI	GGCGCC	1 cut(s)	37
Esp3I	CGTCTC	1 cut(s)	163
FaiI	YATR	4 cut(s)	279, 291, 323, 463
FaqI	GGGAC	2 cut(s)	143, 185
Fnu4HI	GCNGC	5 cut(s)	53, 221, 224, 273, 405
Fsp4HI	GCNGC	5 cut(s)	53, 221, 224, 273, 405
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	5 cut(s)	53, 221, 224, 273, 405
GsaI	CCCAGC	1 cut(s)	88
HaeII	RGCGCY	1 cut(s)	39
HapII	CCGG	1 cut(s)	127
HgaI	GACGC	1 cut(s)	226
HhaI	GCGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	36
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	5 cut(s)	26, 76, 135, 340, 368
HpaII	CCGG	1 cut(s)	127
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	2 cut(s)	152, 202
Hpy188I	TCNGA	5 cut(s)	31, 114, 318, 345, 387
Hpy8I	GTNNAC	2 cut(s)	152, 202
Hpy99I	CGWCG	1 cut(s)	35
HpyCH4V	TGCA	2 cut(s)	407, 421
HpyF10VI	GCNNNNNNNGC	2 cut(s)	229, 278
HpyF3I	CTNAG	2 cut(s)	80, 414
Hsp92I	GRCGYC	1 cut(s)	36
HspAI	GCGC	1 cut(s)	36
KasI	GGCGCC	1 cut(s)	35
LmnI	GCTCC	3 cut(s)	15, 129, 461
LpnPI	CCDG	8 cut(s)	62, 70, 76, 140, 149, 194, 290, 317
Lsp1109I	GCAGC	3 cut(s)	207, 210, 391
MaeIII	GTNAC	1 cut(s)	214
MboII	GAAGA	3 cut(s)	13, 202, 240
MluCI	AATT	1 cut(s)	195
Mly113I	GGCGCC	1 cut(s)	36
MlyI	GAGTC	3 cut(s)	35, 144, 377
MmeI	TCCRAC	1 cut(s)	54
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	113
MspCI	CTTAAG	1 cut(s)	227
MspI	CCGG	1 cut(s)	127
MspR9I	CCNGG	2 cut(s)	128, 305
MvaI	CCWGG	1 cut(s)	305
MwoI	GCNNNNNNNGC	2 cut(s)	229, 278
NarI	GGCGCC	1 cut(s)	36
NciI	CCSGG	1 cut(s)	128
NlaIV	GGNNCC	3 cut(s)	11, 37, 131
NmuCI	GTSAC	1 cut(s)	214
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PfeI	GAWTC	2 cut(s)	76, 340
PflFI	GACNNNGTC	1 cut(s)	134
PfoI	TCCNGGA	1 cut(s)	126
PkrI	GCNGC	5 cut(s)	54, 222, 225, 274, 406
PleI	GAGTC	3 cut(s)	34, 143, 376
PluTI	GGCGCC	1 cut(s)	39
PpsI	GAGTC	3 cut(s)	34, 143, 376
PsiI	TTATAA	2 cut(s)	323, 463
Psp6I	CCWGG	1 cut(s)	303
PspFI	CCCAGC	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	3 cut(s)	11, 37, 131
PspPI	GGNCC	2 cut(s)	130, 392
PsyI	GACNNNGTC	1 cut(s)	134
RseI	CAYNNNNRTG	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	5 cut(s)	53, 221, 224, 273, 405
Sau96I	GGNCC	2 cut(s)	130, 392
SchI	GAGTC	3 cut(s)	35, 144, 377
ScrFI	CCNGG	2 cut(s)	128, 305
SetI	ASST	6 cut(s)	45, 86, 126, 234, 441, 458
SfcI	CTRYAG	1 cut(s)	297
SfoI	GGCGCC	1 cut(s)	37
SinI	GGWCC	2 cut(s)	130, 392
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	1 cut(s)	195
SsiI	CCGC	3 cut(s)	53, 143, 272
SspDI	GGCGCC	1 cut(s)	35
StyD4I	CCNGG	2 cut(s)	126, 303
TaqI	TCGA	2 cut(s)	24, 327
TaqII	GACCGA	1 cut(s)	147
TasI	AATT	1 cut(s)	195
TauI	GCSGC	2 cut(s)	55, 275
TfiI	GAWTC	2 cut(s)	76, 340
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	3 cut(s)	220, 223, 404
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	2 cut(s)	17, 278
TspGWI	ACGGA	1 cut(s)	7
Tth111I	GACNNNGTC	1 cut(s)	134
Vha464I	CTTAAG	1 cut(s)	227
VpaK11BI	GGWCC	2 cut(s)	130, 392
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.