Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001438

Physical Location & Seq

Genomic Coordinates Reverse (-)

63467690 .. 63467929

Gene Structure 240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG322300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGAAGTGGCTCCTCTCCGTCTTAGAGTTCGACGGCGCCAACCTCTCCCTACCGCCCATCGCCAGCAACGACCCGATTCTGAGCTGGGTCTGGTCCTCCATCGCCACCATTCAAATGGGTCAGCTCCGGGACAGAGTCGAGGCGGCGAGCTCACTCGTCTCGCTGGCAAGGGACAACGACCGGAACAAGAAGATAATTGTTGATGAGCCAGTCCAGCTAGCCAAGGGTGCTTGTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008285 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

79

Amino Acids

8.72

Weight (kDa)

6.12

Isoelectric Point (pI)

32.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26600 AT3G26600
fragaria_vesca	FvH4_4g25480 FvH4_5g06080
malus_domestica	MD06G1167100.v1.1 MD13G1102400.v1.1 MD14G1172700.v1.1 MD16G1102800.v1.1
prunus_persica	Prupe.1G089500_v2.0.a1 Prupe.1G243400_v2.0.a1 Prupe.5G166900_v2.0.a1
pyrus_communis	pycom06g14970 pycom06g14980 pycom13g08950 pycom14g14410 pycom16g08740
rosa_chinensis	RchiOBHm_Chr4g0423211 RchiOBHm_Chr4g0432811 RchiOBHm_Chr7g0192761 RchiOBHm_Chr7g0218041
rosa_laevigata	RLG00000004331 RLG00000006810
rosa_multiflora	Rmu_co8276235.1_g000001 Rmu_sc0001516.1_g000053 Rmu_sc0004101.1_g000049 Rmu_sc0005234.1_g000003 Rmu_sc0008148.1_g000037
rosa_roxburghii	Rroxscaffold_2G00090530 Rroxscaffold_3G00262710 Rroxscaffold_5G00374250 Rroxscaffold_7G00212840
rosa_rugosa	Rorug04G0263100 Rorug07G0004500
rosa_samantha	Rh1AG125500 Rh2AG461900 Rh2CG448900 Rh4AG317200 Rh4AG322300 Rh4BG325400 Rh4CG340300 Rh4DG320600 Rh4DG326400 Rh5BG349900 Rh5CG383400 Rh7AG129500 Rh7AG315400 Rh7BG130800 Rh7CG061100 Rh7CG134200 Rh7DG131700
rosa_wichuraiana	Rw4G027590 Rw7G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	35
AciI	CCGC	2 cut(s)	53, 143
AcyI	GRCGYC	1 cut(s)	36
AgsI	TTSAA	1 cut(s)	113
AluBI	AGCT	4 cut(s)	84, 124, 150, 217
AluI	AGCT	4 cut(s)	84, 124, 150, 217
Alw21I	GWGCWC	1 cut(s)	152
Alw26I	GTCTC	1 cut(s)	163
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	93
AsuC2I	CCSGG	1 cut(s)	128
AsuNHI	GCTAGC	1 cut(s)	217
AvaII	GGWCC	1 cut(s)	93
BanI	GGYRCC	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	152
Bbv12I	GWGCWC	1 cut(s)	152
BccI	CCATC	2 cut(s)	65, 107
BceAI	ACGGC	1 cut(s)	49
BcnI	CCSGG	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	1 cut(s)	218
BfoI	RGCGCY	1 cut(s)	39
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	93
BmiI	GGNNCC	2 cut(s)	11, 37
BmrFI	CCNGG	1 cut(s)	128
BmtI	GCTAGC	1 cut(s)	221
BpuMI	CCSGG	1 cut(s)	128
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	222
BsaWI	WCCGGW	1 cut(s)	180
Bse1I	ACTGG	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	209
BseYI	CCCAGC	1 cut(s)	84
Bsh1285I	CGRYCG	1 cut(s)	181
BshNI	GGYRCC	1 cut(s)	35
BsiEI	CGRYCG	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	152
BsiSI	CCGG	2 cut(s)	127, 181
BslFI	GGGAC	2 cut(s)	143, 185
BsmAI	GTCTC	1 cut(s)	163
BsmBI	CGTCTC	1 cut(s)	163
BsmFI	GGGAC	2 cut(s)	143, 185
Bsp1286I	GDGCHC	1 cut(s)	152
BspACI	CCGC	2 cut(s)	53, 143
BspCNI	CTCAG	1 cut(s)	72
BspLI	GGNNCC	2 cut(s)	11, 37
BspOI	GCTAGC	1 cut(s)	221
BspT107I	GGYRCC	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	222
BssNI	GRCGYC	1 cut(s)	36
BssT1I	CCWWGG	1 cut(s)	222
BstACI	GRCGYC	1 cut(s)	36
BstC8I	GCNNGC	4 cut(s)	64, 148, 165, 219
BstDEI	CTNAG	2 cut(s)	22, 80
BstH2I	RGCGCY	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	38
BstMAI	GTCTC	1 cut(s)	163
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	2 cut(s)	214, 227
BstSCI	CCNGG	1 cut(s)	126
BstXI	CCANNNNNNTGG	1 cut(s)	115
BtgZI	GCGATG	2 cut(s)	43, 85
Cac8I	GCNNGC	4 cut(s)	64, 148, 165, 219
CfoI	GCGC	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	93
CviJI	RGCY	7 cut(s)	10, 84, 124, 150, 208, 217, 221
CviKI_1	RGCY	7 cut(s)	10, 84, 124, 150, 208, 217, 221
DdeI	CTNAG	2 cut(s)	22, 80
DinI	GGCGCC	1 cut(s)	37
Ecl136II	GAGCTC	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	93
Eco53kI	GAGCTC	1 cut(s)	150
EcoICRI	GAGCTC	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	152
EgeI	GGCGCC	1 cut(s)	37
EheI	GGCGCC	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	222
Esp3I	CGTCTC	1 cut(s)	163
FaqI	GGGAC	2 cut(s)	143, 185
Fnu4HI	GCNGC	1 cut(s)	144
FriOI	GRGCYC	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	1 cut(s)	218
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	1 cut(s)	144
GsaI	CCCAGC	1 cut(s)	88
HaeII	RGCGCY	1 cut(s)	39
HapII	CCGG	2 cut(s)	127, 181
HhaI	GCGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	36
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HinfI	GANTC	2 cut(s)	76, 135
HpaII	CCGG	2 cut(s)	127, 181
Hpy188I	TCNGA	1 cut(s)	81
Hpy99I	CGWCG	1 cut(s)	35
HpyF10VI	GCNNNNNNNGC	2 cut(s)	214, 227
HpyF3I	CTNAG	2 cut(s)	22, 80
Hsp92I	GRCGYC	1 cut(s)	36
HspAI	GCGC	1 cut(s)	36
KasI	GGCGCC	1 cut(s)	35
LmnI	GCTCC	2 cut(s)	15, 129
LpnPI	CCDG	8 cut(s)	70, 76, 76, 140, 149, 194, 222, 227
MaeI	CTAG	1 cut(s)	218
MboII	GAAGA	1 cut(s)	202
MhlI	GDGCHC	1 cut(s)	152
MluCI	AATT	1 cut(s)	195
Mly113I	GGCGCC	1 cut(s)	36
MlyI	GAGTC	1 cut(s)	144
MnlI	CCTC	4 cut(s)	23, 53, 106, 133
MslI	CAYNNNNRTG	1 cut(s)	113
MspI	CCGG	2 cut(s)	127, 181
MspR9I	CCNGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	214, 227
NarI	GGCGCC	1 cut(s)	36
NciI	CCSGG	1 cut(s)	128
NheI	GCTAGC	1 cut(s)	217
NlaIV	GGNNCC	2 cut(s)	11, 37
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	76
PflFI	GACNNNGTC	1 cut(s)	134
PfoI	TCCNGGA	1 cut(s)	126
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	1 cut(s)	143
PluTI	GGCGCC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	143
Psp124BI	GAGCTC	1 cut(s)	152
PspFI	CCCAGC	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	11, 37
PspPI	GGNCC	1 cut(s)	93
PsyI	GACNNNGTC	1 cut(s)	134
RseI	CAYNNNNRTG	1 cut(s)	113
SacI	GAGCTC	1 cut(s)	152
SatI	GCNGC	1 cut(s)	144
Sau96I	GGNCC	1 cut(s)	93
SchI	GAGTC	1 cut(s)	144
ScrFI	CCNGG	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	152
SetI	ASST	5 cut(s)	45, 86, 126, 152, 219
SfoI	GGCGCC	1 cut(s)	37
SinI	GGWCC	1 cut(s)	93
SmiMI	CAYNNNNRTG	1 cut(s)	113
Sse9I	AATT	1 cut(s)	195
SsiI	CCGC	2 cut(s)	53, 143
SspDI	GGCGCC	1 cut(s)	35
SspMI	CTAG	1 cut(s)	218
SstI	GAGCTC	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	126
StyI	CCWWGG	1 cut(s)	222
TaqI	TCGA	3 cut(s)	30, 138, 235
TasI	AATT	1 cut(s)	195
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	1 cut(s)	76
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	7
Tth111I	GACNNNGTC	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	93
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.