Prupe.1G089500_v2.0.a1

Armadillo repeat only

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001438
Physical Location & Seq
Reverse (-)
6702793 .. 6703233
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G089500.1

Sequence Viewer

Length: 441 bp
ATGCTCCGAACCGTCGTCCGCTTCGCCACGACGGCGCCGTTTTTGTACGAGCGCCCAATTCGGAGAATCGTCGCCGAGGTCTCCAAGAATCTCGAGCGAGCCCTAACCCTAGTCCACAAGTGCAAGCGACAGAGCATCCTACGACGTGTCGTGACAATCACCAGCGCCACCGACTTCCGCAAGCTCTTCAACTTCCTCGAGTCTTCCGTCAGAGACATGAAGTGGCTGCTCAGCATATTCGACCCGGACTCCGGGGGAAATAACGGAATTGTGCTCTCCCTCGCCCCGATTGCCAGCAACGACCCGATTCTCTCATGGGTTTGGTCCTTCATCGCCACTATTCAAATGGGTCAGTTGCCGGATCGTGTTGAGGCTGCGAACGAGCTCGCTTCCCTGGCCCAAGACAACGACCTCCAAGGCCAGACTCGGCAGTGTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

147

Amino Acids

16.52

Weight (kDa)

9.5

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 34
AciI CCGC 2 cut(s) 19, 178
AclWI GGATC 1 cut(s) 369
AcyI GRCGYC 1 cut(s) 35
AfaI GTAC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 251
AflIII ACRYGT 1 cut(s) 145
AgsI TTSAA 2 cut(s) 190, 344
AjiI CACGTC 1 cut(s) 146
AjnI CCWGG 1 cut(s) 393
AluBI AGCT 2 cut(s) 184, 385
AluI AGCT 2 cut(s) 184, 385
Alw21I GWGCWC 2 cut(s) 276, 387
Alw26I GTCTC 2 cut(s) 85, 207
AlwI GGATC 1 cut(s) 369
Ama87I CYCGRG 2 cut(s) 92, 197
AoxI GGCC 2 cut(s) 396, 418
ApeKI GCWGC 2 cut(s) 226, 374
AspLEI GCGC 3 cut(s) 37, 54, 167
AspS9I GGNCC 2 cut(s) 324, 397
AsuC2I CCSGG 2 cut(s) 245, 253
AsuHPI GGTGA 1 cut(s) 151
AvaI CYCGRG 2 cut(s) 92, 197
AvaII GGWCC 1 cut(s) 324
BanI GGYRCC 1 cut(s) 34
BanII GRGCYC 2 cut(s) 103, 387
BbsI GAAGAC 1 cut(s) 195
Bbv12I GWGCWC 2 cut(s) 276, 387
BbvI GCAGC 2 cut(s) 213, 361
BceAI ACGGC 2 cut(s) 22, 48
BciT130I CCWGG 1 cut(s) 395
BcnI CCSGG 2 cut(s) 245, 253
BcoDI GTCTC 2 cut(s) 85, 207
BfaI CTAG 1 cut(s) 110
BfoI RGCGCY 3 cut(s) 38, 55, 168
BglI GCCNNNNNGGC 1 cut(s) 32
BisI GCNGC 2 cut(s) 227, 375
BlpI GCTNAGC 1 cut(s) 230
BlsI GCNGC 2 cut(s) 228, 376
Bme1390I CCNGG 3 cut(s) 245, 253, 395
Bme18I GGWCC 1 cut(s) 324
BmeT110I CYCGRG 2 cut(s) 92, 197
BmgBI CACGTC 1 cut(s) 146
BmgT120I GGNCC 2 cut(s) 324, 397
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 3 cut(s) 245, 253, 395
BmsI GCATC 1 cut(s) 144
BpiI GAAGAC 1 cut(s) 195
Bpu1102I GCTNAGC 1 cut(s) 230
BpuMI CCSGG 2 cut(s) 245, 253
BsaHI GRCGYC 1 cut(s) 35
BsaI GGTCTC 1 cut(s) 85
BsaJI CCNNGG 4 cut(s) 75, 252, 393, 415
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 1 cut(s) 251
BseBI CCWGG 1 cut(s) 395
BseDI CCNNGG 4 cut(s) 75, 252, 393, 415
BseGI GGATG 1 cut(s) 135
BseLI CCNNNNNNNGG 1 cut(s) 251
BseMII CTCAG 1 cut(s) 244
BseXI GCAGC 2 cut(s) 213, 361
BshFI GGCC 2 cut(s) 398, 420
BshNI GGYRCC 1 cut(s) 34
BsiHKAI GWGCWC 2 cut(s) 276, 387
BsiHKCI CYCGRG 2 cut(s) 92, 197
BsiSI CCGG 3 cut(s) 245, 252, 359
BslI CCNNNNNNNGG 1 cut(s) 251
BsmAI GTCTC 2 cut(s) 85, 207
BsnI GGCC 2 cut(s) 398, 420
Bso31I GGTCTC 1 cut(s) 85
BsoBI CYCGRG 2 cut(s) 92, 197
Bsp1286I GDGCHC 3 cut(s) 103, 276, 387
Bsp143I GATC 1 cut(s) 361
Bsp1720I GCTNAGC 1 cut(s) 230
BspACI CCGC 2 cut(s) 19, 178
BspANI GGCC 2 cut(s) 398, 420
BspCNI CTCAG 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 36
BspPI GGATC 1 cut(s) 369
BspQI GCTCTTC 1 cut(s) 191
BspT107I GGYRCC 1 cut(s) 34
BspTNI GGTCTC 1 cut(s) 85
BssECI CCNNGG 4 cut(s) 75, 252, 393, 415
BssMI GATC 1 cut(s) 361
BssNI GRCGYC 1 cut(s) 35
BssT1I CCWWGG 1 cut(s) 415
Bst2UI CCWGG 1 cut(s) 395
Bst4CI ACNGT 1 cut(s) 13
Bst6I CTCTTC 1 cut(s) 191
BstACI GRCGYC 1 cut(s) 35
BstC8I GCNNGC 5 cut(s) 99, 125, 182, 295, 387
BstDEI CTNAG 1 cut(s) 230
BstF5I GGATG 1 cut(s) 135
BstH2I RGCGCY 3 cut(s) 38, 55, 168
BstHHI GCGC 3 cut(s) 37, 54, 167
BstKTI GATC 1 cut(s) 364
BstMAI GTCTC 2 cut(s) 85, 207
BstMBI GATC 1 cut(s) 361
BstMWI GCNNNNNNNGC 3 cut(s) 32, 290, 395
BstNI CCWGG 1 cut(s) 395
BstSCI CCNGG 3 cut(s) 243, 251, 393
BstV1I GCAGC 2 cut(s) 213, 361
BstV2I GAAGAC 1 cut(s) 195
BsuRI GGCC 2 cut(s) 398, 420
BtgZI GCGATG 1 cut(s) 316
BtrI CACGTC 1 cut(s) 146
BtsCI GGATG 1 cut(s) 135
BtsI GCAGTG 1 cut(s) 437
BtsIMutI CAGTG 1 cut(s) 437
Cac8I GCNNGC 5 cut(s) 99, 125, 182, 295, 387
CfoI GCGC 3 cut(s) 37, 54, 167
Cfr13I GGNCC 2 cut(s) 324, 397
Csp6I GTAC 1 cut(s) 46
CviAII CATG 2 cut(s) 217, 315
CviJI RGCY 7 cut(s) 101, 184, 226, 374, 385, 398, 420
CviKI_1 RGCY 7 cut(s) 101, 184, 226, 374, 385, 398, 420
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 1 cut(s) 230
DinI GGCGCC 1 cut(s) 36
DpnI GATC 1 cut(s) 363
DpnII GATC 1 cut(s) 361
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
Ecl136II GAGCTC 1 cut(s) 385
Eco130I CCWWGG 1 cut(s) 415
Eco24I GRGCYC 2 cut(s) 103, 387
Eco31I GGTCTC 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 324
Eco53kI GAGCTC 1 cut(s) 385
Eco88I CYCGRG 2 cut(s) 92, 197
EcoICRI GAGCTC 1 cut(s) 385
EcoRII CCWGG 1 cut(s) 393
EcoT14I CCWWGG 1 cut(s) 415
EcoT38I GRGCYC 2 cut(s) 103, 387
EgeI GGCGCC 1 cut(s) 36
EheI GGCGCC 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 415
FaeI CATG 2 cut(s) 220, 318
FaiI YATR 3 cut(s) 218, 236, 316
FatI CATG 2 cut(s) 216, 314
Fnu4HI GCNGC 2 cut(s) 227, 375
FokI GGATG 1 cut(s) 122
FriOI GRGCYC 2 cut(s) 103, 387
Fsp4HI GCNGC 2 cut(s) 227, 375
FspBI CTAG 1 cut(s) 110
GlaI GCGC 3 cut(s) 36, 53, 166
GluI GCNGC 2 cut(s) 227, 375
HaeII RGCGCY 3 cut(s) 38, 55, 168
HaeIII GGCC 2 cut(s) 398, 420
HapII CCGG 3 cut(s) 245, 252, 359
HhaI GCGC 3 cut(s) 37, 54, 167
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 2 cut(s) 220, 318
Hin6I GCGC 3 cut(s) 35, 52, 165
HinP1I GCGC 3 cut(s) 35, 52, 165
HinfI GANTC 6 cut(s) 66, 88, 200, 248, 307, 424
HpaII CCGG 3 cut(s) 245, 252, 359
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 3 cut(s) 8, 63, 212
Hpy188III TCNNGA 2 cut(s) 92, 151
Hpy8I GTNNAC 1 cut(s) 115
Hpy99I CGWCG 4 cut(s) 17, 34, 74, 147
HpyAV CCTTC 1 cut(s) 337
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 1 cut(s) 123
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 290, 395
HpyF3I CTNAG 1 cut(s) 230
HpySE526I ACGT 1 cut(s) 145
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 2 cut(s) 220, 318
HspAI GCGC 3 cut(s) 35, 52, 165
KasI GGCGCC 1 cut(s) 34
Kzo9I GATC 1 cut(s) 361
LguI GCTCTTC 1 cut(s) 191
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 8 cut(s) 175, 258, 265, 307, 372, 380, 407, 434
Lsp1109I GCAGC 2 cut(s) 213, 361
LweI GCATC 1 cut(s) 144
MaeI CTAG 1 cut(s) 110
MaeII ACGT 1 cut(s) 145
MaeIII GTNAC 1 cut(s) 151
MalI GATC 1 cut(s) 363
MboI GATC 1 cut(s) 361
MboII GAAGA 2 cut(s) 178, 195
MhlI GDGCHC 3 cut(s) 103, 276, 387
MluCI AATT 2 cut(s) 57, 267
Mly113I GGCGCC 1 cut(s) 35
MlyI GAGTC 3 cut(s) 209, 242, 418
MnlI CCTC 5 cut(s) 70, 206, 290, 364, 422
MspI CCGG 3 cut(s) 245, 252, 359
MspR9I CCNGG 3 cut(s) 245, 253, 395
MvaI CCWGG 1 cut(s) 395
MwoI GCNNNNNNNGC 3 cut(s) 32, 290, 395
NarI GGCGCC 1 cut(s) 35
NciI CCSGG 2 cut(s) 245, 253
NdeII GATC 1 cut(s) 361
NlaIII CATG 2 cut(s) 220, 318
NlaIV GGNNCC 1 cut(s) 36
NmeAIII GCCGAG 2 cut(s) 100, 406
NmuCI GTSAC 1 cut(s) 151
PaeR7I CTCGAG 2 cut(s) 92, 197
PciSI GCTCTTC 1 cut(s) 191
PcsI WCGNNNNNNNCGW 2 cut(s) 35, 204
PfeI GAWTC 3 cut(s) 66, 88, 307
PkrI GCNGC 2 cut(s) 228, 376
PleI GAGTC 3 cut(s) 208, 242, 418
PluTI GGCGCC 1 cut(s) 38
PpsI GAGTC 3 cut(s) 208, 242, 418
Psp124BI GAGCTC 1 cut(s) 387
Psp6I CCWGG 1 cut(s) 393
PspGI CCWGG 1 cut(s) 393
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 2 cut(s) 324, 397
PspXI VCTCGAGB 1 cut(s) 197
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SacI GAGCTC 1 cut(s) 387
SapI GCTCTTC 1 cut(s) 191
SatI GCNGC 2 cut(s) 227, 375
Sau3AI GATC 1 cut(s) 361
Sau96I GGNCC 2 cut(s) 324, 397
SchI GAGTC 3 cut(s) 209, 242, 418
ScrFI CCNGG 3 cut(s) 245, 253, 395
SduI GDGCHC 3 cut(s) 103, 276, 387
SetI ASST 5 cut(s) 81, 148, 186, 387, 414
SfaNI GCATC 1 cut(s) 144
SfoI GGCGCC 1 cut(s) 36
Sfr274I CTCGAG 2 cut(s) 92, 197
SinI GGWCC 1 cut(s) 324
SlaI CTCGAG 2 cut(s) 92, 197
SmlI CTYRAG 2 cut(s) 92, 197
SmoI CTYRAG 2 cut(s) 92, 197
Sse9I AATT 2 cut(s) 57, 267
SsiI CCGC 2 cut(s) 19, 178
SspDI GGCGCC 1 cut(s) 34
SspMI CTAG 1 cut(s) 110
SstI GAGCTC 1 cut(s) 387
StyD4I CCNGG 3 cut(s) 243, 251, 393
StyI CCWWGG 1 cut(s) 415
TaaI ACNGT 1 cut(s) 13
TaiI ACGT 1 cut(s) 148
TaqI TCGA 3 cut(s) 93, 198, 240
TasI AATT 2 cut(s) 57, 267
TfiI GAWTC 3 cut(s) 66, 88, 307
TscAI CASTG 1 cut(s) 437
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 2 cut(s) 226, 374
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 2 cut(s) 233, 319
TspGWI ACGGA 2 cut(s) 196, 279
TspRI CASTG 1 cut(s) 437
VpaK11BI GGWCC 1 cut(s) 324
XcmI CCANNNNNNNNNTGG 1 cut(s) 343
XhoI CTCGAG 2 cut(s) 92, 197
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.