Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001438

Physical Location & Seq

Genomic Coordinates Reverse (-)

12263560 .. 12263781

Gene Structure 222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00090530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGCTCCGATCCGCCGTCCGTATAGCCACCGCCTCCCCCTCCCTCCACGAGCGCCCCGTCCAACGCATCGCCGTTGATGTGGCCAAGAACCTCGACCACACCCTCACCCTAGTCCTCGAGTGCAAGCACAACGGCGTCCTCTCGCCGGGTTTTCTCCATCACCACCACCGTCGACTTCCGCAAAGGTGTCCAACCTCCTCGAGTCCTCCATCGGCGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008285 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

73

Amino Acids

8.05

Weight (kDa)

10.73

Isoelectric Point (pI)

74.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7792	PF25055	1 - 48	3.1e-12	Domain of unknown function (DUF7792)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26600 AT3G26600
fragaria_vesca	FvH4_4g25480 FvH4_5g06080
malus_domestica	MD06G1167100.v1.1 MD13G1102400.v1.1 MD14G1172700.v1.1 MD16G1102800.v1.1
prunus_persica	Prupe.1G089500_v2.0.a1 Prupe.1G243400_v2.0.a1 Prupe.5G166900_v2.0.a1
pyrus_communis	pycom06g14970 pycom06g14980 pycom13g08950 pycom14g14410 pycom16g08740
rosa_chinensis	RchiOBHm_Chr4g0423211 RchiOBHm_Chr4g0432811 RchiOBHm_Chr7g0192761 RchiOBHm_Chr7g0218041
rosa_laevigata	RLG00000004331 RLG00000006810
rosa_multiflora	Rmu_co8276235.1_g000001 Rmu_sc0001516.1_g000053 Rmu_sc0004101.1_g000049 Rmu_sc0005234.1_g000003 Rmu_sc0008148.1_g000037
rosa_roxburghii	Rroxscaffold_2G00090530 Rroxscaffold_3G00262710 Rroxscaffold_5G00374250 Rroxscaffold_7G00212840
rosa_rugosa	Rorug04G0263100 Rorug07G0004500
rosa_samantha	Rh1AG125500 Rh2AG461900 Rh2CG448900 Rh4AG317200 Rh4AG322300 Rh4BG325400 Rh4CG340300 Rh4DG320600 Rh4DG326400 Rh5BG349900 Rh5CG383400 Rh7AG129500 Rh7AG315400 Rh7BG130800 Rh7CG061100 Rh7CG134200 Rh7DG131700
rosa_wichuraiana	Rw4G027590 Rw7G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	172
AciI	CCGC	3 cut(s)	12, 30, 179
AclWI	GGATC	1 cut(s)	3
AcoI	YGGCCR	1 cut(s)	81
AcyI	GRCGYC	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	145
AlwI	GGATC	1 cut(s)	3
Ama87I	CYCGRG	2 cut(s)	116, 199
AoxI	GGCC	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	54
AsuC2I	CCSGG	1 cut(s)	147
AsuHPI	GGTGA	2 cut(s)	97, 152
AvaI	CYCGRG	2 cut(s)	116, 199
BalI	TGGCCA	1 cut(s)	83
BauI	CACGAG	1 cut(s)	47
BccI	CCATC	2 cut(s)	165, 217
BceAI	ACGGC	2 cut(s)	56, 148
BcnI	CCSGG	1 cut(s)	147
BfaI	CTAG	1 cut(s)	110
BfoI	RGCGCY	1 cut(s)	55
Bme1390I	CCNGG	1 cut(s)	147
BmeT110I	CYCGRG	2 cut(s)	116, 199
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	1 cut(s)	75
BpuMI	CCSGG	1 cut(s)	147
BsaHI	GRCGYC	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseRI	GAGGAG	1 cut(s)	187
BshFI	GGCC	1 cut(s)	83
BsiHKCI	CYCGRG	2 cut(s)	116, 199
BsiSI	CCGG	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	145
BsnI	GGCC	1 cut(s)	83
BsoBI	CYCGRG	2 cut(s)	116, 199
Bsp143I	GATC	1 cut(s)	8
BspACI	CCGC	3 cut(s)	12, 30, 179
BspANI	GGCC	1 cut(s)	83
BspPI	GGATC	1 cut(s)	3
BssMI	GATC	1 cut(s)	8
BssNI	GRCGYC	1 cut(s)	135
BssSI	CACGAG	1 cut(s)	47
Bst2BI	CACGAG	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	170
BstACI	GRCGYC	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	125
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	83
BtgZI	GCGATG	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	125
CfoI	GCGC	1 cut(s)	54
CseI	GACGC	1 cut(s)	124
CviAII	CATG	1 cut(s)	219
CviJI	RGCY	2 cut(s)	26, 83
CviKI_1	RGCY	2 cut(s)	26, 83
DpnI	GATC	1 cut(s)	10
DpnII	GATC	1 cut(s)	8
EaeI	YGGCCR	1 cut(s)	81
Eco88I	CYCGRG	2 cut(s)	116, 199
FaeI	CATG	1 cut(s)	222
FaiI	YATR	2 cut(s)	23, 220
FatI	CATG	1 cut(s)	218
FblI	GTMKAC	1 cut(s)	172
FspBI	CTAG	1 cut(s)	110
GlaI	GCGC	1 cut(s)	53
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	1 cut(s)	146
HgaI	GACGC	1 cut(s)	124
HhaI	GCGC	1 cut(s)	54
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	1 cut(s)	222
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HincII	GTYRAC	1 cut(s)	173
HindII	GTYRAC	1 cut(s)	173
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	2 cut(s)	97, 152
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	1 cut(s)	8
Hpy8I	GTNNAC	1 cut(s)	173
Hpy99I	CGWCG	1 cut(s)	174
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4V	TGCA	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	1 cut(s)	222
HspAI	GCGC	1 cut(s)	52
Kzo9I	GATC	1 cut(s)	8
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	1 cut(s)	159
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	1 cut(s)	110
MalI	GATC	1 cut(s)	10
MboI	GATC	1 cut(s)	8
MlsI	TGGCCA	1 cut(s)	83
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	1 cut(s)	211
MmeI	TCCRAC	2 cut(s)	85, 215
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
Msp20I	TGGCCA	1 cut(s)	83
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	147
NciI	CCSGG	1 cut(s)	147
NdeII	GATC	1 cut(s)	8
NlaIII	CATG	1 cut(s)	222
PaeR7I	CTCGAG	2 cut(s)	116, 199
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PleI	GAGTC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	210
PspXI	VCTCGAGB	2 cut(s)	116, 199
SalI	GTCGAC	1 cut(s)	171
Sau3AI	GATC	1 cut(s)	8
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	147
SetI	ASST	3 cut(s)	93, 188, 197
SfaNI	GCATC	1 cut(s)	75
Sfr274I	CTCGAG	2 cut(s)	116, 199
SlaI	CTCGAG	2 cut(s)	116, 199
SmlI	CTYRAG	2 cut(s)	116, 199
SmoI	CTYRAG	2 cut(s)	116, 199
SsiI	CCGC	3 cut(s)	12, 30, 179
SspMI	CTAG	1 cut(s)	110
StyD4I	CCNGG	1 cut(s)	145
TaaI	ACNGT	1 cut(s)	170
TaqI	TCGA	4 cut(s)	93, 117, 172, 200
TspGWI	ACGGA	1 cut(s)	8
XhoI	CTCGAG	2 cut(s)	116, 199
XmiI	GTMKAC	1 cut(s)	172
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.