Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001438

Physical Location & Seq

Genomic Coordinates Reverse (-)

48827864 .. 48828283

Gene Structure 420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39263

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCATAAACCCATCAAACACCCCCAAAACCTCGACCGCGCCCTCACCCTTGTCGGCAAGTGCAAGCACAGCGGCGTCCTCCGCCAGGTCTTCTCCATCACCACCGCCGCCGACTTCTGCAAGGTCTCCAACCTGCTCGAGTCCTCCATCGGCGACATGAAGTGGCTCCTCTCCGTCTTCGAGTCTGACAACGCCAACCTCTCCCTGCCACCCATTGCCAGCAACGACCCGATTCTAAGCTGGGTCTGGTCCTACATCACCACCATTCAGATGGGTCAGCTCCGGGACCGAGTCGAGGTGGCGAGTTCACTCGTCTCGCTGGTGAGGGACAACGATCGGAACAAGAAGATAATTGTTGGCGAGGGAGGAGTGACGCCGCTGCCCAAGCTTTTGAAAGAGGGGTCTTCGGCGGAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008285 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

139

Amino Acids

15.25

Weight (kDa)

8.62

Isoelectric Point (pI)

26.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7792	PF25055	9 - 60	9e-21	Domain of unknown function (DUF7792)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26600 AT3G26600
fragaria_vesca	FvH4_4g25480 FvH4_5g06080
malus_domestica	MD06G1167100.v1.1 MD13G1102400.v1.1 MD14G1172700.v1.1 MD16G1102800.v1.1
prunus_persica	Prupe.1G089500_v2.0.a1 Prupe.1G243400_v2.0.a1 Prupe.5G166900_v2.0.a1
pyrus_communis	pycom06g14970 pycom06g14980 pycom13g08950 pycom14g14410 pycom16g08740
rosa_chinensis	RchiOBHm_Chr4g0423211 RchiOBHm_Chr4g0432811 RchiOBHm_Chr7g0192761 RchiOBHm_Chr7g0218041
rosa_laevigata	RLG00000004331 RLG00000006810
rosa_multiflora	Rmu_co8276235.1_g000001 Rmu_sc0001516.1_g000053 Rmu_sc0004101.1_g000049 Rmu_sc0005234.1_g000003 Rmu_sc0008148.1_g000037
rosa_roxburghii	Rroxscaffold_2G00090530 Rroxscaffold_3G00262710 Rroxscaffold_5G00374250 Rroxscaffold_7G00212840
rosa_rugosa	Rorug04G0263100 Rorug07G0004500
rosa_samantha	Rh1AG125500 Rh2AG461900 Rh2CG448900 Rh4AG317200 Rh4AG322300 Rh4BG325400 Rh4CG340300 Rh4DG320600 Rh4DG326400 Rh5BG349900 Rh5CG383400 Rh7AG129500 Rh7AG315400 Rh7BG130800 Rh7CG061100 Rh7CG134200 Rh7DG131700
rosa_wichuraiana	Rw4G027590 Rw7G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	141
AccII	CGCG	1 cut(s)	39
AciI	CCGC	7 cut(s)	37, 72, 82, 105, 108, 377, 410
AcyI	GRCGYC	2 cut(s)	75, 374
AfiI	CCNNNNNNNGG	2 cut(s)	85, 295
AgsI	TTSAA	1 cut(s)	394
AjnI	CCWGG	1 cut(s)	84
AluBI	AGCT	3 cut(s)	240, 280, 388
AluI	AGCT	3 cut(s)	240, 280, 388
Alw26I	GTCTC	2 cut(s)	130, 319
Ama87I	CYCGRG	1 cut(s)	137
ApeKI	GCWGC	1 cut(s)	379
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	2 cut(s)	249, 286
AsuC2I	CCSGG	1 cut(s)	284
AsuHPI	GGTGA	4 cut(s)	37, 91, 250, 334
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	2 cut(s)	249, 286
BbsI	GAAGAC	3 cut(s)	82, 169, 396
BbvI	GCAGC	1 cut(s)	366
BccI	CCATC	4 cut(s)	20, 104, 155, 265
BciT130I	CCWGG	1 cut(s)	86
BcnI	CCSGG	1 cut(s)	284
BcoDI	GTCTC	2 cut(s)	130, 319
BfuAI	ACCTGC	1 cut(s)	141
BisI	GCNGC	4 cut(s)	73, 108, 377, 380
BlsI	GCNGC	4 cut(s)	74, 109, 378, 381
Bme1390I	CCNGG	2 cut(s)	86, 284
Bme18I	GGWCC	2 cut(s)	249, 286
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	2 cut(s)	249, 286
BmiI	GGNNCC	2 cut(s)	167, 287
BmrFI	CCNGG	2 cut(s)	86, 284
BpiI	GAAGAC	3 cut(s)	82, 169, 396
BpuMI	CCSGG	1 cut(s)	284
BsaHI	GRCGYC	2 cut(s)	75, 374
BsaI	GGTCTC	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 295
Bse3DI	GCAATG	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	86
BseLI	CCNNNNNNNGG	2 cut(s)	85, 295
BseMI	GCAATG	1 cut(s)	213
BseRI	GAGGAG	2 cut(s)	158, 381
BseXI	GCAGC	1 cut(s)	366
BseYI	CCCAGC	1 cut(s)	240
Bsh1236I	CGCG	1 cut(s)	39
Bsh1285I	CGRYCG	2 cut(s)	37, 337
BsiEI	CGRYCG	2 cut(s)	37, 337
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	283
BslFI	GGGAC	2 cut(s)	299, 341
BslI	CCNNNNNNNGG	2 cut(s)	85, 295
BsmAI	GTCTC	2 cut(s)	130, 319
BsmBI	CGTCTC	1 cut(s)	319
BsmFI	GGGAC	2 cut(s)	299, 341
Bso31I	GGTCTC	1 cut(s)	130
BsoBI	CYCGRG	1 cut(s)	137
Bsp143I	GATC	1 cut(s)	334
BspACI	CCGC	7 cut(s)	37, 72, 82, 105, 108, 377, 410
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	167, 287
BspMI	ACCTGC	1 cut(s)	141
BspTNI	GGTCTC	1 cut(s)	130
BsrDI	GCAATG	1 cut(s)	213
BssMI	GATC	1 cut(s)	334
BssNI	GRCGYC	2 cut(s)	75, 374
Bst2UI	CCWGG	1 cut(s)	86
BstACI	GRCGYC	2 cut(s)	75, 374
BstC8I	GCNNGC	2 cut(s)	65, 220
BstDEI	CTNAG	1 cut(s)	236
BstENI	CCTNNNNNAGG	1 cut(s)	83
BstFNI	CGCG	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	1 cut(s)	337
BstMAI	GTCTC	2 cut(s)	130, 319
BstMBI	GATC	1 cut(s)	334
BstMCI	CGRYCG	2 cut(s)	37, 337
BstMWI	GCNNNNNNNGC	3 cut(s)	69, 81, 385
BstNI	CCWGG	1 cut(s)	86
BstSCI	CCNGG	2 cut(s)	84, 282
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	366
BstV2I	GAAGAC	3 cut(s)	82, 169, 396
BstXI	CCANNNNNNTGG	1 cut(s)	271
BveI	ACCTGC	1 cut(s)	141
Cac8I	GCNNGC	2 cut(s)	65, 220
CfoI	GCGC	1 cut(s)	41
Cfr13I	GGNCC	2 cut(s)	249, 286
CseI	GACGC	2 cut(s)	64, 382
CviAII	CATG	1 cut(s)	157
CviJI	RGCY	4 cut(s)	166, 240, 280, 388
CviKI_1	RGCY	4 cut(s)	166, 240, 280, 388
DdeI	CTNAG	1 cut(s)	236
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
EciI	GGCGGA	1 cut(s)	71
Eco31I	GGTCTC	1 cut(s)	130
Eco47I	GGWCC	2 cut(s)	249, 286
Eco88I	CYCGRG	1 cut(s)	137
EcoNI	CCTNNNNNAGG	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	84
EcoT22I	ATGCAT	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	319
FaeI	CATG	1 cut(s)	160
FaiI	YATR	3 cut(s)	6, 158, 418
FaqI	GGGAC	2 cut(s)	299, 341
FatI	CATG	1 cut(s)	156
Fnu4HI	GCNGC	4 cut(s)	73, 108, 377, 380
Fsp4HI	GCNGC	4 cut(s)	73, 108, 377, 380
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	4 cut(s)	73, 108, 377, 380
GsaI	CCCAGC	1 cut(s)	244
HapII	CCGG	1 cut(s)	283
HgaI	GACGC	2 cut(s)	64, 382
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	2 cut(s)	75, 374
Hin1II	CATG	1 cut(s)	160
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	4 cut(s)	140, 182, 232, 291
HpaII	CCGG	1 cut(s)	283
HphI	GGTGA	4 cut(s)	37, 91, 250, 334
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188I	TCNGA	3 cut(s)	187, 270, 339
Hpy8I	GTNNAC	1 cut(s)	308
HpyCH4V	TGCA	3 cut(s)	4, 63, 120
HpyF10VI	GCNNNNNNNGC	3 cut(s)	69, 81, 385
HpyF3I	CTNAG	1 cut(s)	236
Hsp92I	GRCGYC	2 cut(s)	75, 374
Hsp92II	CATG	1 cut(s)	160
HspAI	GCGC	1 cut(s)	39
Kzo9I	GATC	1 cut(s)	334
LmnI	GCTCC	2 cut(s)	171, 285
LpnPI	CCDG	9 cut(s)	71, 98, 146, 218, 226, 232, 232, 296, 305
Lsp1109I	GCAGC	1 cut(s)	366
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MboII	GAAGA	4 cut(s)	82, 169, 358, 396
MluCI	AATT	1 cut(s)	351
MlyI	GAGTC	3 cut(s)	149, 191, 300
MmeI	TCCRAC	1 cut(s)	153
Mph1103I	ATGCAT	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	269
MspA1I	CMGCKG	2 cut(s)	72, 379
MspI	CCGG	1 cut(s)	283
MspR9I	CCNGG	2 cut(s)	86, 284
MvaI	CCWGG	1 cut(s)	86
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	3 cut(s)	69, 81, 385
NciI	CCSGG	1 cut(s)	284
NdeII	GATC	1 cut(s)	334
NlaIII	CATG	1 cut(s)	160
NlaIV	GGNNCC	2 cut(s)	167, 287
NmuCI	GTSAC	1 cut(s)	370
NsiI	ATGCAT	1 cut(s)	6
PaeR7I	CTCGAG	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	232
PflFI	GACNNNGTC	1 cut(s)	290
PfoI	TCCNGGA	1 cut(s)	282
PkrI	GCNGC	4 cut(s)	74, 109, 378, 381
Ple19I	CGATCG	1 cut(s)	337
PleI	GAGTC	3 cut(s)	148, 190, 299
PpsI	GAGTC	3 cut(s)	148, 190, 299
Psp6I	CCWGG	1 cut(s)	84
PspFI	CCCAGC	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	167, 287
PspPI	GGNCC	2 cut(s)	249, 286
PspXI	VCTCGAGB	1 cut(s)	137
PsyI	GACNNNGTC	1 cut(s)	290
PvuI	CGATCG	1 cut(s)	337
RseI	CAYNNNNRTG	1 cut(s)	269
SatI	GCNGC	4 cut(s)	73, 108, 377, 380
Sau3AI	GATC	1 cut(s)	334
Sau96I	GGNCC	2 cut(s)	249, 286
SchI	GAGTC	3 cut(s)	149, 191, 300
ScrFI	CCNGG	2 cut(s)	86, 284
SetI	ASST	9 cut(s)	33, 90, 126, 135, 201, 242, 282, 300, 390
Sfr274I	CTCGAG	1 cut(s)	137
SinI	GGWCC	2 cut(s)	249, 286
SlaI	CTCGAG	1 cut(s)	137
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	1 cut(s)	351
SsiI	CCGC	7 cut(s)	37, 72, 82, 105, 108, 377, 410
StyD4I	CCNGG	2 cut(s)	84, 282
TaqI	TCGA	4 cut(s)	33, 138, 180, 294
TaqII	GACCGA	1 cut(s)	303
TasI	AATT	1 cut(s)	351
TauI	GCSGC	3 cut(s)	75, 110, 379
TfiI	GAWTC	1 cut(s)	232
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	1 cut(s)	379
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	1 cut(s)	173
TspGWI	ACGGA	1 cut(s)	163
Tth111I	GACNNNGTC	1 cut(s)	290
VpaK11BI	GGWCC	2 cut(s)	249, 286
XagI	CCTNNNNNAGG	1 cut(s)	83
XcmI	CCANNNNNNNNNTGG	1 cut(s)	268
XhoI	CTCGAG	1 cut(s)	137
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.