Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001438

Physical Location & Seq

Genomic Coordinates Forward (+)

4431396 .. 4431734

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG061100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCTCCGATCCGCCGTCTGGATCGCCGCCACCCCCACCTCCCTCTACGAGCGCCCCGTCGGACGCGTCGCCGTCTACGTGGCCAAGAACCTCGACCGCGCCCTCACCCTCGTCCGCAAGTGCATGCACAGCGGCATCCTCCGCAAGGTCTTCTCCATCACCACCACCGCCGACTTCTGCAAGGTGTCCAACCTCCTCGAGTCCTCCATCGGCGACATGAAGTGGCTCCTTTCCATCTTCGAGTCCGACGGCGCCAACCTTTCCCTGCCACCCATTGCCAGCAACGACCCGATTCTGAGCTGGGTCTGGGTCCTACATCGCCACCATTCAGATGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008285 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

112

Amino Acids

12.46

Weight (kDa)

9.14

Isoelectric Point (pI)

34.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7792	PF25055	1 - 80	3.7e-29	Domain of unknown function (DUF7792)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26600 AT3G26600
fragaria_vesca	FvH4_4g25480 FvH4_5g06080
malus_domestica	MD06G1167100.v1.1 MD13G1102400.v1.1 MD14G1172700.v1.1 MD16G1102800.v1.1
prunus_persica	Prupe.1G089500_v2.0.a1 Prupe.1G243400_v2.0.a1 Prupe.5G166900_v2.0.a1
pyrus_communis	pycom06g14970 pycom06g14980 pycom13g08950 pycom14g14410 pycom16g08740
rosa_chinensis	RchiOBHm_Chr4g0423211 RchiOBHm_Chr4g0432811 RchiOBHm_Chr7g0192761 RchiOBHm_Chr7g0218041
rosa_laevigata	RLG00000004331 RLG00000006810
rosa_multiflora	Rmu_co8276235.1_g000001 Rmu_sc0001516.1_g000053 Rmu_sc0004101.1_g000049 Rmu_sc0005234.1_g000003 Rmu_sc0008148.1_g000037
rosa_roxburghii	Rroxscaffold_2G00090530 Rroxscaffold_3G00262710 Rroxscaffold_5G00374250 Rroxscaffold_7G00212840
rosa_rugosa	Rorug04G0263100 Rorug07G0004500
rosa_samantha	Rh1AG125500 Rh2AG461900 Rh2CG448900 Rh4AG317200 Rh4AG322300 Rh4BG325400 Rh4CG340300 Rh4DG320600 Rh4DG326400 Rh5BG349900 Rh5CG383400 Rh7AG129500 Rh7AG315400 Rh7BG130800 Rh7CG061100 Rh7CG134200 Rh7DG131700
rosa_wichuraiana	Rw4G027590 Rw7G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	251
AccI	GTMKAC	1 cut(s)	75
AccII	CGCG	2 cut(s)	66, 99
AciI	CCGC	7 cut(s)	12, 27, 97, 115, 132, 142, 168
AclWI	GGATC	2 cut(s)	3, 29
AcoI	YGGCCR	1 cut(s)	81
AcyI	GRCGYC	1 cut(s)	252
AfiI	CCNNNNNNNGG	2 cut(s)	18, 145
AflIII	ACRYGT	1 cut(s)	64
AluBI	AGCT	1 cut(s)	300
AluI	AGCT	1 cut(s)	300
AlwI	GGATC	2 cut(s)	3, 29
Ama87I	CYCGRG	1 cut(s)	197
AoxI	GGCC	1 cut(s)	81
AspLEI	GCGC	3 cut(s)	54, 101, 254
AspS9I	GGNCC	1 cut(s)	310
AsuHPI	GGTGA	2 cut(s)	97, 151
AvaI	CYCGRG	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	310
BalI	TGGCCA	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	251
BbsI	GAAGAC	1 cut(s)	142
BccI	CCATC	4 cut(s)	164, 215, 242, 326
BceAI	ACGGC	2 cut(s)	56, 265
BfoI	RGCGCY	2 cut(s)	55, 255
BisI	GCNGC	2 cut(s)	27, 133
BlsI	GCNGC	2 cut(s)	28, 134
Bme18I	GGWCC	1 cut(s)	310
BmeT110I	CYCGRG	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	3 cut(s)	227, 253, 311
BmsI	GCATC	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	142
BsaAI	YACGTR	1 cut(s)	79
BsaHI	GRCGYC	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 145
Bse3DI	GCAATG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	2 cut(s)	18, 145
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	1 cut(s)	287
BseRI	GAGGAG	1 cut(s)	185
BseYI	CCCAGC	1 cut(s)	300
Bsh1236I	CGCG	2 cut(s)	66, 99
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	1 cut(s)	83
BshNI	GGYRCC	1 cut(s)	251
BsiEI	CGRYCG	1 cut(s)	97
BsiHKCI	CYCGRG	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	18, 145
BsnI	GGCC	1 cut(s)	83
BsoBI	CYCGRG	1 cut(s)	197
Bsp143I	GATC	2 cut(s)	8, 21
BspACI	CCGC	7 cut(s)	12, 27, 97, 115, 132, 142, 168
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	1 cut(s)	288
BspFNI	CGCG	2 cut(s)	66, 99
BspLI	GGNNCC	3 cut(s)	227, 253, 311
BspPI	GGATC	2 cut(s)	3, 29
BspT107I	GGYRCC	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	273
BssMI	GATC	2 cut(s)	8, 21
BssNI	GRCGYC	1 cut(s)	252
BstACI	GRCGYC	1 cut(s)	252
BstBAI	YACGTR	1 cut(s)	79
BstC8I	GCNNGC	2 cut(s)	125, 280
BstDEI	CTNAG	1 cut(s)	296
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	135
BstFNI	CGCG	2 cut(s)	66, 99
BstH2I	RGCGCY	2 cut(s)	55, 255
BstHHI	GCGC	3 cut(s)	54, 101, 254
BstKTI	GATC	2 cut(s)	11, 24
BstMBI	GATC	2 cut(s)	8, 21
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 141
BstNSI	RCATGY	1 cut(s)	127
BstUI	CGCG	2 cut(s)	66, 99
BstV2I	GAAGAC	1 cut(s)	142
BstXI	CCANNNNNNTGG	1 cut(s)	332
BsuRI	GGCC	1 cut(s)	83
BtgZI	GCGATG	1 cut(s)	302
BtsCI	GGATG	1 cut(s)	135
Cac8I	GCNNGC	2 cut(s)	125, 280
CfoI	GCGC	3 cut(s)	54, 101, 254
Cfr13I	GGNCC	1 cut(s)	310
CseI	GACGC	2 cut(s)	55, 72
CviAII	CATG	2 cut(s)	124, 217
CviJI	RGCY	3 cut(s)	83, 226, 300
CviKI_1	RGCY	3 cut(s)	83, 226, 300
DdeI	CTNAG	1 cut(s)	296
DinI	GGCGCC	1 cut(s)	253
DpnI	GATC	2 cut(s)	10, 23
DpnII	GATC	2 cut(s)	8, 21
EaeI	YGGCCR	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	310
Eco88I	CYCGRG	1 cut(s)	197
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	310
EgeI	GGCGCC	1 cut(s)	253
EheI	GGCGCC	1 cut(s)	253
FaeI	CATG	2 cut(s)	127, 220
FaiI	YATR	2 cut(s)	125, 218
FatI	CATG	2 cut(s)	123, 216
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	2 cut(s)	27, 133
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	2 cut(s)	27, 133
GlaI	GCGC	3 cut(s)	53, 100, 253
GluI	GCNGC	2 cut(s)	27, 133
GsaI	CCCAGC	1 cut(s)	304
HaeII	RGCGCY	2 cut(s)	55, 255
HaeIII	GGCC	1 cut(s)	83
HgaI	GACGC	2 cut(s)	55, 72
HhaI	GCGC	3 cut(s)	54, 101, 254
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	2 cut(s)	127, 220
Hin6I	GCGC	3 cut(s)	52, 99, 252
HinP1I	GCGC	3 cut(s)	52, 99, 252
HinfI	GANTC	3 cut(s)	200, 242, 292
HphI	GGTGA	2 cut(s)	97, 151
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	5 cut(s)	8, 62, 247, 297, 331
Hpy188III	TCNNGA	1 cut(s)	19
Hpy8I	GTNNAC	1 cut(s)	76
Hpy99I	CGWCG	3 cut(s)	62, 71, 251
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	3 cut(s)	123, 127, 180
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 141
HpyF3I	CTNAG	1 cut(s)	296
HpySE526I	ACGT	1 cut(s)	78
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	2 cut(s)	127, 220
HspAI	GCGC	3 cut(s)	52, 99, 252
KasI	GGCGCC	1 cut(s)	251
Kzo9I	GATC	2 cut(s)	8, 21
LmnI	GCTCC	2 cut(s)	9, 231
LpnPI	CCDG	5 cut(s)	4, 278, 286, 292, 292
LweI	GCATC	1 cut(s)	144
MaeII	ACGT	1 cut(s)	78
MalI	GATC	2 cut(s)	10, 23
MboI	GATC	2 cut(s)	8, 21
MboII	GAAGA	2 cut(s)	142, 229
MlsI	TGGCCA	1 cut(s)	83
MluI	ACGCGT	1 cut(s)	64
MluNI	TGGCCA	1 cut(s)	83
Mly113I	GGCGCC	1 cut(s)	252
MlyI	GAGTC	2 cut(s)	209, 251
MmeI	TCCRAC	3 cut(s)	40, 213, 270
MnlI	CCTC	9 cut(s)	49, 53, 101, 113, 119, 149, 203, 206, 214
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MslI	CAYNNNNRTG	1 cut(s)	330
Msp20I	TGGCCA	1 cut(s)	83
MspA1I	CMGCKG	1 cut(s)	132
MvnI	CGCG	2 cut(s)	66, 99
MwoI	GCNNNNNNNGC	2 cut(s)	129, 141
NarI	GGCGCC	1 cut(s)	252
NdeII	GATC	2 cut(s)	8, 21
NlaIII	CATG	2 cut(s)	127, 220
NlaIV	GGNNCC	3 cut(s)	227, 253, 311
NspI	RCATGY	1 cut(s)	127
PaeI	GCATGC	1 cut(s)	127
PaeR7I	CTCGAG	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	2 cut(s)	54, 75
PfeI	GAWTC	1 cut(s)	292
PkrI	GCNGC	2 cut(s)	28, 134
PleI	GAGTC	2 cut(s)	208, 250
PluTI	GGCGCC	1 cut(s)	255
PpsI	GAGTC	2 cut(s)	208, 250
Ppu21I	YACGTR	1 cut(s)	79
PpuMI	RGGWCCY	1 cut(s)	310
Psp5II	RGGWCCY	1 cut(s)	310
PspFI	CCCAGC	1 cut(s)	300
PspN4I	GGNNCC	3 cut(s)	227, 253, 311
PspPI	GGNCC	1 cut(s)	310
PspPPI	RGGWCCY	1 cut(s)	310
PspXI	VCTCGAGB	1 cut(s)	197
RseI	CAYNNNNRTG	1 cut(s)	330
SatI	GCNGC	2 cut(s)	27, 133
Sau3AI	GATC	2 cut(s)	8, 21
Sau96I	GGNCC	1 cut(s)	310
SchI	GAGTC	2 cut(s)	209, 251
SetI	ASST	8 cut(s)	41, 81, 93, 150, 186, 195, 261, 302
SfaNI	GCATC	1 cut(s)	144
SfoI	GGCGCC	1 cut(s)	253
Sfr274I	CTCGAG	1 cut(s)	197
SinI	GGWCC	1 cut(s)	310
SlaI	CTCGAG	1 cut(s)	197
SmiMI	CAYNNNNRTG	1 cut(s)	330
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SphI	GCATGC	1 cut(s)	127
SsiI	CCGC	7 cut(s)	12, 27, 97, 115, 132, 142, 168
SspDI	GGCGCC	1 cut(s)	251
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	3 cut(s)	93, 198, 240
TauI	GCSGC	2 cut(s)	29, 135
TfiI	GAWTC	1 cut(s)	292
TspDTI	ATGAA	1 cut(s)	233
VpaK11BI	GGWCC	1 cut(s)	310
XagI	CCTNNNNNAGG	1 cut(s)	143
XceI	RCATGY	1 cut(s)	127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	329
XhoI	CTCGAG	1 cut(s)	197
XmiI	GTMKAC	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.