Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001438

Physical Location & Seq

Genomic Coordinates Reverse (-)

50291970 .. 50292257

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG383400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGGTCAGCTCCGGGATCGAGTCGAGGCGGCGAGTTCACTCGTCTCACTGGCGAGGGACAACGACCGGAACAAGAAGATAATTGTTGACGAGGGAGGAGTGACGCCGCTGCTCAAGCTTTTGAAAGAGGGGTCTTCGGCGGAGGCACAGATTGCTGCGGCGAATGCTCTGTTTCATATCACTCTGGACCAGGAGAGGGTTCGGATTATAATCGAGTTGAATGGGATTCCGATGATAGTTTCGGTTTTGAGGGATTCGCCAATGAGGGTTCAGGTGATCACTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008285 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0042127 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

95

Amino Acids

10.4

Weight (kDa)

6.57

Isoelectric Point (pI)

25.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arm	PF00514	21 - 61	1.6e-06	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26600 AT3G26600
fragaria_vesca	FvH4_4g25480 FvH4_5g06080
malus_domestica	MD06G1167100.v1.1 MD13G1102400.v1.1 MD14G1172700.v1.1 MD16G1102800.v1.1
prunus_persica	Prupe.1G089500_v2.0.a1 Prupe.1G243400_v2.0.a1 Prupe.5G166900_v2.0.a1
pyrus_communis	pycom06g14970 pycom06g14980 pycom13g08950 pycom14g14410 pycom16g08740
rosa_chinensis	RchiOBHm_Chr4g0423211 RchiOBHm_Chr4g0432811 RchiOBHm_Chr7g0192761 RchiOBHm_Chr7g0218041
rosa_laevigata	RLG00000004331 RLG00000006810
rosa_multiflora	Rmu_co8276235.1_g000001 Rmu_sc0001516.1_g000053 Rmu_sc0004101.1_g000049 Rmu_sc0005234.1_g000003 Rmu_sc0008148.1_g000037
rosa_roxburghii	Rroxscaffold_2G00090530 Rroxscaffold_3G00262710 Rroxscaffold_5G00374250 Rroxscaffold_7G00212840
rosa_rugosa	Rorug04G0263100 Rorug07G0004500
rosa_samantha	Rh1AG125500 Rh2AG461900 Rh2CG448900 Rh4AG317200 Rh4AG322300 Rh4BG325400 Rh4CG340300 Rh4DG320600 Rh4DG326400 Rh5BG349900 Rh5CG383400 Rh7AG129500 Rh7AG315400 Rh7BG130800 Rh7CG061100 Rh7CG134200 Rh7DG131700
rosa_wichuraiana	Rw4G027590 Rw7G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	209
AciI	CCGC	4 cut(s)	29, 107, 140, 158
AclWI	GGATC	1 cut(s)	24
AcyI	GRCGYC	1 cut(s)	104
AdeI	CACNNNGTG	1 cut(s)	285
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgsI	TTSAA	2 cut(s)	124, 220
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	2 cut(s)	10, 118
AluI	AGCT	2 cut(s)	10, 118
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	1 cut(s)	24
ApeKI	GCWGC	2 cut(s)	109, 155
AspS9I	GGNCC	1 cut(s)	187
AsuC2I	CCSGG	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	286
AvaII	GGWCC	1 cut(s)	187
BbsI	GAAGAC	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	96, 142
BciT130I	CCWGG	1 cut(s)	191
BclI	TGATCA	1 cut(s)	276
BcnI	CCSGG	1 cut(s)	14
BcoDI	GTCTC	1 cut(s)	49
BisI	GCNGC	5 cut(s)	30, 107, 110, 156, 159
BlsI	GCNGC	5 cut(s)	31, 108, 111, 157, 160
Bme1390I	CCNGG	2 cut(s)	14, 191
Bme18I	GGWCC	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	187
BmrFI	CCNGG	2 cut(s)	14, 191
BpiI	GAAGAC	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	98
BpuMI	CCSGG	1 cut(s)	14
BsaBI	GATNNNNATC	1 cut(s)	209
BsaHI	GRCGYC	1 cut(s)	104
BsaWI	WCCGGW	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse1I	ACTGG	1 cut(s)	54
Bse8I	GATNNNNATC	1 cut(s)	209
BseBI	CCWGG	1 cut(s)	191
BseJI	GATNNNNATC	1 cut(s)	209
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseNI	ACTGG	1 cut(s)	54
BseRI	GAGGAG	1 cut(s)	111
BseXI	GCAGC	2 cut(s)	96, 142
Bsh1285I	CGRYCG	1 cut(s)	67
BsiEI	CGRYCG	1 cut(s)	67
BsiSI	CCGG	2 cut(s)	13, 67
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	1 cut(s)	49
BsmBI	CGTCTC	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	169
Bsp143I	GATC	2 cut(s)	16, 276
BspACI	CCGC	4 cut(s)	29, 107, 140, 158
BspPI	GGATC	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	54
BssMI	GATC	2 cut(s)	16, 276
BssNI	GRCGYC	1 cut(s)	104
Bst2UI	CCWGG	1 cut(s)	191
BstACI	GRCGYC	1 cut(s)	104
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstKTI	GATC	2 cut(s)	19, 279
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	2 cut(s)	16, 276
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	3 cut(s)	115, 152, 164
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	2 cut(s)	12, 189
BstV1I	GCAGC	2 cut(s)	96, 142
BstV2I	GAAGAC	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	187
CseI	GACGC	1 cut(s)	112
CviJI	RGCY	2 cut(s)	10, 118
CviKI_1	RGCY	2 cut(s)	10, 118
DpnI	GATC	2 cut(s)	18, 278
DpnII	GATC	2 cut(s)	16, 276
DraIII	CACNNNGTG	1 cut(s)	285
EciI	GGCGGA	1 cut(s)	155
Eco47I	GGWCC	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	189
Esp3I	CGTCTC	1 cut(s)	49
FaiI	YATR	2 cut(s)	177, 209
FaqI	GGGAC	1 cut(s)	71
FbaI	TGATCA	1 cut(s)	276
Fnu4HI	GCNGC	5 cut(s)	30, 107, 110, 156, 159
Fsp4HI	GCNGC	5 cut(s)	30, 107, 110, 156, 159
GluI	GCNGC	5 cut(s)	30, 107, 110, 156, 159
HapII	CCGG	2 cut(s)	13, 67
HgaI	GACGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	104
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	3 cut(s)	21, 226, 254
HpaII	CCGG	2 cut(s)	13, 67
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	2 cut(s)	38, 88
Hpy188I	TCNGA	2 cut(s)	204, 231
Hpy188III	TCNNGA	1 cut(s)	185
Hpy8I	GTNNAC	2 cut(s)	38, 88
HpyF10VI	GCNNNNNNNGC	3 cut(s)	115, 152, 164
Hsp92I	GRCGYC	1 cut(s)	104
Ksp22I	TGATCA	1 cut(s)	276
Kzo9I	GATC	2 cut(s)	16, 276
LmnI	GCTCC	1 cut(s)	15
LpnPI	CCDG	7 cut(s)	26, 35, 80, 170, 176, 203, 257
Lsp1109I	GCAGC	2 cut(s)	96, 142
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	2 cut(s)	18, 278
MboI	GATC	2 cut(s)	16, 276
MboII	GAAGA	2 cut(s)	88, 126
MluCI	AATT	1 cut(s)	81
MlyI	GAGTC	1 cut(s)	30
MnlI	CCTC	9 cut(s)	19, 48, 85, 89, 121, 136, 189, 243, 258
MspA1I	CMGCKG	1 cut(s)	109
MspI	CCGG	2 cut(s)	13, 67
MspR9I	CCNGG	2 cut(s)	14, 191
Mva1269I	GAATGC	1 cut(s)	169
MvaI	CCWGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	3 cut(s)	115, 152, 164
NciI	CCSGG	1 cut(s)	14
NdeII	GATC	2 cut(s)	16, 276
NmuCI	GTSAC	1 cut(s)	100
PctI	GAATGC	1 cut(s)	169
PfeI	GAWTC	2 cut(s)	226, 254
PfoI	TCCNGGA	1 cut(s)	12
PkrI	GCNGC	5 cut(s)	31, 108, 111, 157, 160
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
PsiI	TTATAA	1 cut(s)	209
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	187
SatI	GCNGC	5 cut(s)	30, 107, 110, 156, 159
Sau3AI	GATC	2 cut(s)	16, 276
Sau96I	GGNCC	1 cut(s)	187
SchI	GAGTC	1 cut(s)	30
ScrFI	CCNGG	2 cut(s)	14, 191
SetI	ASST	3 cut(s)	12, 120, 276
SinI	GGWCC	1 cut(s)	187
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	1 cut(s)	81
SsiI	CCGC	4 cut(s)	29, 107, 140, 158
StyD4I	CCNGG	2 cut(s)	12, 189
TaqI	TCGA	3 cut(s)	19, 24, 213
TasI	AATT	1 cut(s)	81
TauI	GCSGC	3 cut(s)	32, 109, 161
TfiI	GAWTC	2 cut(s)	226, 254
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	2 cut(s)	109, 155
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	164
TspRI	CASTG	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.