Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0016329

Physical Location & Seq

Genomic Coordinates Reverse (-)

56701969 .. 56702892

Gene Structure 924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00262700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCGTCCAGCATGGTTATCAAGGTTCGATATTTTGGAACCTCAAAGGTTAAAGTTGGGGACAGAGAGAGGTATTTGAAAGCTCCTATTGATGAGAATGGACAACTGAGTTTTGACATGGGTGGATTGAGGGAGAAAATCTGCAGTACTTGTTATCTCCCACCTGGTTCAGACATTACTCTAGTGTATATCGATGAAGATGGTGATGTAGTTACTCTTGTTGACGACGATGATCTGCGAGATGCAATGAGGCAGCATCTGAAATCCTTCAGGATTGATGTACTGATGAACAATAACAAAGTTTATCGCCAATCAAGCTCCAAAAGGAGTACTCGAGTGATGATGGATTCTGTTGGATCGAGTCTTGGCACTAGTGATGACAACATGGAGACCAACAGAGCTAGTACCAGTGGTTATGCAACTCGTGATAATGATTATACAAGTAGCCCTTCTTTCCATGAATGCTCCTTCATTGCAGATGACCTGGTTAATCCTACTGTTGCTTGTTTTAAAAGGAACTACTCTGAAGCCATAAGTGGTATGATGCTTCATACCGGTGCTTGCTGTGATGGCTGTGGTTGCAATCCAATAACTGGATCTAGGTTCAAGTCCATTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000323 GO:0000324 GO:0000328 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005773 GO:0005775 GO:0005829 GO:0006914 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0012505 GO:0016043 GO:0016236 GO:0022607 GO:0031410 GO:0031974 GO:0031982 GO:0032182 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034622 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051258 GO:0051259 GO:0051641 GO:0061919 GO:0061957 GO:0065003 GO:0070013 GO:0070727 GO:0071840 GO:0072665 GO:0097708 GO:0120113

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

N_BRCA1_IG PB1 ZZ

Protein Analysis

206

Amino Acids

22.78

Weight (kDa)

5.39

Isoelectric Point (pI)

32.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PB1	PF00564	42 - 89	6e-09	PB1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016329)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g06081
malus_domestica	MD06G1166000.v1.1
prunus_persica	Prupe.5G165900_v2.0.a1
pyrus_communis	pycom06g14850
rosa_chinensis	RchiOBHm_Chr7g0192771
rosa_laevigata	RLG00000004330
rosa_multiflora	Rmu_sc0002040.1_g000018
rosa_roxburghii	Rroxscaffold_3G00262700
rosa_rugosa	Rorug07G0004500 Rorug07G0004500
rosa_samantha	Rh7AG129600 Rh7BG130900 Rh7CG134300 Rh7DG131800
rosa_wichuraiana	Rw7G011090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	593
AclWI	GGATC	2 cut(s)	364, 604
AcuI	CTGAAG	2 cut(s)	253, 546
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	4 cut(s)	148, 282, 331, 406
AfiI	CCNNNNNNNGG	1 cut(s)	593
AgeI	ACCGGT	1 cut(s)	554
AgsI	TTSAA	2 cut(s)	79, 607
AhlI	ACTAGT	1 cut(s)	371
AjnI	CCWGG	2 cut(s)	163, 483
AluBI	AGCT	3 cut(s)	83, 318, 401
AluI	AGCT	3 cut(s)	83, 318, 401
Alw26I	GTCTC	1 cut(s)	383
AlwI	GGATC	2 cut(s)	364, 604
AlwNI	CAGNNNCTG	1 cut(s)	259
Ama87I	CYCGRG	1 cut(s)	333
ApeKI	GCWGC	1 cut(s)	253
AsiGI	ACCGGT	1 cut(s)	554
Asp700I	GAANNNNTTC	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	215
AvaI	CYCGRG	1 cut(s)	333
BauI	CACGAG	1 cut(s)	423
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	3 cut(s)	194, 337, 563
BciT130I	CCWGG	2 cut(s)	165, 485
BcoDI	GTCTC	1 cut(s)	383
BcuI	ACTAGT	1 cut(s)	371
BfaI	CTAG	4 cut(s)	182, 372, 402, 600
BfmI	CTRYAG	1 cut(s)	142
BisI	GCNGC	1 cut(s)	254
BlsI	GCNGC	1 cut(s)	255
BmcAI	AGTACT	2 cut(s)	148, 331
Bme1390I	CCNGG	2 cut(s)	165, 485
BmeT110I	CYCGRG	1 cut(s)	333
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	2 cut(s)	165, 485
BmsI	GCATC	3 cut(s)	232, 265, 534
Bsa29I	ATCGAT	1 cut(s)	192
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	383
BsaWI	WCCGGW	1 cut(s)	554
Bsc4I	CCNNNNNNNGG	1 cut(s)	593
Bse118I	RCCGGY	1 cut(s)	554
Bse1I	ACTGG	2 cut(s)	408, 598
Bse3DI	GCAATG	2 cut(s)	252, 471
BseBI	CCWGG	2 cut(s)	165, 485
BseCI	ATCGAT	1 cut(s)	192
BseLI	CCNNNNNNNGG	1 cut(s)	593
BseMI	GCAATG	2 cut(s)	252, 471
BseMII	CTCAG	1 cut(s)	98
BseNI	ACTGG	2 cut(s)	408, 598
BseXI	GCAGC	1 cut(s)	265
BshTI	ACCGGT	1 cut(s)	554
BshVI	ATCGAT	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	333
BsiSI	CCGG	1 cut(s)	555
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	593
BsmAI	GTCTC	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	74
BsmI	GAATGC	1 cut(s)	467
Bso31I	GGTCTC	1 cut(s)	383
BsoBI	CYCGRG	1 cut(s)	333
Bsp143I	GATC	3 cut(s)	232, 356, 596
BspCNI	CTCAG	1 cut(s)	99
BspDI	ATCGAT	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	40
BspMAI	CTGCAG	1 cut(s)	146
BspPI	GGATC	2 cut(s)	364, 604
BspTNI	GGTCTC	1 cut(s)	383
BsrDI	GCAATG	2 cut(s)	252, 471
BsrFI	RCCGGY	1 cut(s)	554
BsrI	ACTGG	2 cut(s)	408, 598
BssAI	RCCGGY	1 cut(s)	554
BssMI	GATC	3 cut(s)	232, 356, 596
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	423
Bst2BI	CACGAG	1 cut(s)	423
Bst2UI	CCWGG	2 cut(s)	165, 485
Bst4CI	ACNGT	1 cut(s)	499
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	562
BstDEI	CTNAG	1 cut(s)	107
BstKTI	GATC	3 cut(s)	235, 359, 599
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	3 cut(s)	232, 356, 596
BstMWI	GCNNNNNNNGC	3 cut(s)	315, 570, 579
BstNI	CCWGG	2 cut(s)	165, 485
BstSCI	CCNGG	2 cut(s)	163, 483
BstSFI	CTRYAG	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	265
BstX2I	RGATCY	1 cut(s)	596
BstYI	RGATCY	1 cut(s)	596
Bsu15I	ATCGAT	1 cut(s)	192
BsuTUI	ATCGAT	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	415
Cac8I	GCNNGC	1 cut(s)	562
CaiI	CAGNNNCTG	1 cut(s)	259
Cfr10I	RCCGGY	1 cut(s)	554
ClaI	ATCGAT	1 cut(s)	192
CsiI	ACCWGGT	2 cut(s)	163, 483
Csp6I	GTAC	4 cut(s)	147, 281, 330, 405
CspAI	ACCGGT	1 cut(s)	554
CviAII	CATG	4 cut(s)	13, 118, 385, 458
CviJI	RGCY	6 cut(s)	83, 318, 401, 447, 530, 573
CviKI_1	RGCY	6 cut(s)	83, 318, 401, 447, 530, 573
CviQI	GTAC	4 cut(s)	147, 281, 330, 405
DdeI	CTNAG	1 cut(s)	107
DpnI	GATC	3 cut(s)	234, 358, 598
DpnII	GATC	3 cut(s)	232, 356, 596
DraI	TTTAAA	1 cut(s)	511
Eco31I	GGTCTC	1 cut(s)	383
Eco57I	CTGAAG	2 cut(s)	253, 546
Eco88I	CYCGRG	1 cut(s)	333
EcoRII	CCWGG	2 cut(s)	163, 483
FaeI	CATG	4 cut(s)	16, 121, 388, 461
FalI	AAGNNNNNCTT	2 cut(s)	433, 465
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	4 cut(s)	12, 117, 384, 457
Fnu4HI	GCNGC	1 cut(s)	254
Fsp4HI	GCNGC	1 cut(s)	254
FspBI	CTAG	4 cut(s)	182, 372, 402, 600
GluI	GCNGC	1 cut(s)	254
HapII	CCGG	1 cut(s)	555
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	16, 121, 388, 461
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	2 cut(s)	347, 361
HpaII	CCGG	1 cut(s)	555
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	3 cut(s)	172, 261, 526
Hpy188III	TCNNGA	2 cut(s)	271, 425
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	3 cut(s)	277, 459, 478
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4V	TGCA	5 cut(s)	144, 245, 419, 476, 582
HpyF10VI	GCNNNNNNNGC	3 cut(s)	315, 570, 579
HpyF3I	CTNAG	1 cut(s)	107
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	16, 121, 388, 461
Kzo9I	GATC	3 cut(s)	232, 356, 596
LmnI	GCTCC	3 cut(s)	88, 323, 470
LpnPI	CCDG	9 cut(s)	22, 150, 177, 256, 421, 470, 497, 568, 579
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	3 cut(s)	232, 265, 534
MabI	ACCWGGT	2 cut(s)	163, 483
MaeI	CTAG	4 cut(s)	182, 372, 402, 600
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	3 cut(s)	234, 358, 598
MboI	GATC	3 cut(s)	232, 356, 596
MboII	GAAGA	1 cut(s)	209
MflI	RGATCY	1 cut(s)	596
MlyI	GAGTC	1 cut(s)	370
MmeI	TCCRAC	1 cut(s)	334
MnlI	CCTC	4 cut(s)	52, 63, 123, 243
MroXI	GAANNNNTTC	1 cut(s)	266
MseI	TTAA	3 cut(s)	51, 489, 510
MslI	CAYNNNNRTG	1 cut(s)	555
MspI	CCGG	1 cut(s)	555
MspR9I	CCNGG	2 cut(s)	165, 485
Mva1269I	GAATGC	1 cut(s)	467
MvaI	CCWGG	2 cut(s)	165, 485
MwoI	GCNNNNNNNGC	3 cut(s)	315, 570, 579
NdeII	GATC	3 cut(s)	232, 356, 596
NlaIII	CATG	4 cut(s)	16, 121, 388, 461
NlaIV	GGNNCC	1 cut(s)	40
PaeR7I	CTCGAG	1 cut(s)	333
PctI	GAATGC	1 cut(s)	467
PdmI	GAANNNNTTC	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	347
PflMI	CCANNNNNTGG	1 cut(s)	593
PinAI	ACCGGT	1 cut(s)	554
PkrI	GCNGC	1 cut(s)	255
PleI	GAGTC	1 cut(s)	369
PpsI	GAGTC	1 cut(s)	369
Psp6I	CCWGG	2 cut(s)	163, 483
PspGI	CCWGG	2 cut(s)	163, 483
PspN4I	GGNNCC	1 cut(s)	40
PspXI	VCTCGAGB	1 cut(s)	333
PstI	CTGCAG	1 cut(s)	146
PstNI	CAGNNNCTG	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	596
RsaI	GTAC	4 cut(s)	148, 282, 331, 406
RsaNI	GTAC	4 cut(s)	147, 281, 330, 405
RseI	CAYNNNNRTG	1 cut(s)	555
SaqAI	TTAA	3 cut(s)	51, 489, 510
SatI	GCNGC	1 cut(s)	254
Sau3AI	GATC	3 cut(s)	232, 356, 596
ScaI	AGTACT	2 cut(s)	148, 331
SchI	GAGTC	1 cut(s)	370
ScrFI	CCNGG	2 cut(s)	165, 485
SexAI	ACCWGGT	2 cut(s)	163, 483
SfaNI	GCATC	3 cut(s)	232, 265, 534
SfcI	CTRYAG	1 cut(s)	142
Sfr274I	CTCGAG	1 cut(s)	333
SlaI	CTCGAG	1 cut(s)	333
SmiMI	CAYNNNNRTG	1 cut(s)	555
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
SpeI	ACTAGT	1 cut(s)	371
SspMI	CTAG	4 cut(s)	182, 372, 402, 600
StyD4I	CCNGG	2 cut(s)	163, 483
TaaI	ACNGT	1 cut(s)	499
TaqI	TCGA	4 cut(s)	28, 192, 334, 359
TatI	WGTACW	3 cut(s)	146, 280, 329
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	3 cut(s)	51, 489, 510
Tru9I	TTAA	3 cut(s)	51, 489, 510
TscAI	CASTG	1 cut(s)	415
TseI	GCWGC	1 cut(s)	253
TspDTI	ATGAA	5 cut(s)	210, 302, 460, 474, 539
TspRI	CASTG	1 cut(s)	415
Van91I	CCANNNNNTGG	1 cut(s)	593
XhoI	CTCGAG	1 cut(s)	333
XmnI	GAANNNNTTC	1 cut(s)	266
XspI	CTAG	4 cut(s)	182, 372, 402, 600
ZrmI	AGTACT	2 cut(s)	148, 331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.