pycom06g14850

zinc ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0016329
Physical Location & Seq
Reverse (-)
19483494 .. 19484613
1120 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g14850.2

Sequence Viewer

Length: 723 bp
ATGCAAGAGATTAAATACGCCATTACGATTACGTCCAAGACAATCTCTCCCCTATTATCTTTTTGCCGCCCAAGTGTGAACGTCTCTGAATCATCTTCTCCAACTTCATTCTTCTCTGACCGCTCCTGTGGAGCGATGGCCTCCACCGCGGTCATCGACGTCCGGTATTTCGGAACCTCTAAGGTTAGAGCCGGCGGCAGAGTGAGGCATCTCAGTGCTCGTGTTGATAACAATGGCGAACTGGATCTCGACATGGGAGCATTGCGGAGAGAAATTCGCAGCCTTTGTGCCCTCCCACCCGCTGCTGACATTACTCTGACGTACATTGATGAAAACTACGATGTCGTTACTCTTGTGGACGATGATGATCTGCGGGAAGCAATGAGGCAGCGTCTGGAGCCCTTCAGGATCGATGTGCTGATGAACGATGACAAAGAAGACTGCGGCAAAAACTCAAGCTCCGGAAAATGTCACGTGACGGATGCTGTAAATGCAACAAGTGATGTGAGTAATAGCAATGTGTTTGATGAATTCCATCTGGCAAATTATGATCACCCTGTTAGTCCTAGGGTTAAACAATCTGAAGACGAATGTGGTATGATGTGCGACGCAGGCATTCGCTGTCGCGCCTGCAATGACAAGGTCGCGAAACTGTGGTTAGCGGCGTTGGCCCTCGTAGTGTCGGTCCGGTTATTATCCCGGCGACATGGATCGGATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HECT MIB_HERC2 Neuralized ZZ zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

241

Amino Acids

26.46

Weight (kDa)

5.41

Isoelectric Point (pI)

50.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016329)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g06081
malus_domestica MD06G1166000.v1.1
prunus_persica Prupe.5G165900_v2.0.a1
pyrus_communis pycom06g14850
rosa_chinensis RchiOBHm_Chr7g0192771
rosa_laevigata RLG00000004330
rosa_multiflora Rmu_sc0002040.1_g000018
rosa_roxburghii Rroxscaffold_3G00262700
rosa_rugosa Rorug07G0004500 Rorug07G0004500
rosa_samantha Rh7AG129600 Rh7BG130900 Rh7CG134300 Rh7DG131800
rosa_wichuraiana Rw7G011090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 162
AccBSI CCGCTC 1 cut(s) 123
AccII CGCG 3 cut(s) 149, 627, 647
AccIII TCCGGA 1 cut(s) 461
AclWI GGATC 3 cut(s) 252, 416, 718
AcsI RAATTY 2 cut(s) 273, 530
AcuI CTGAAG 2 cut(s) 388, 603
AcvI CACGTG 1 cut(s) 475
AcyI GRCGYC 1 cut(s) 159
AfaI GTAC 1 cut(s) 323
AluBI AGCT 1 cut(s) 459
AluI AGCT 1 cut(s) 459
Alw21I GWGCWC 1 cut(s) 220
Alw26I GTCTC 1 cut(s) 88
AlwI GGATC 3 cut(s) 252, 416, 718
AlwNI CAGNNNCTG 1 cut(s) 394
Aor13HI TCCGGA 1 cut(s) 461
AoxI GGCC 2 cut(s) 138, 669
ApeKI GCWGC 3 cut(s) 279, 302, 388
ApoI RAATTY 2 cut(s) 273, 530
AspA2I CCTAGG 1 cut(s) 566
AspLEI GCGC 1 cut(s) 629
AspS9I GGNCC 2 cut(s) 670, 685
AsuC2I CCSGG 1 cut(s) 700
AsuHPI GGTGA 1 cut(s) 545
AvaII GGWCC 1 cut(s) 685
AvrII CCTAGG 1 cut(s) 566
BaeGI GKGCMC 1 cut(s) 292
BanII GRGCYC 1 cut(s) 402
BauI CACGAG 1 cut(s) 219
BbrPI CACGTG 1 cut(s) 475
BbsI GAAGAC 2 cut(s) 444, 591
Bbv12I GWGCWC 1 cut(s) 220
BbvI GCAGC 3 cut(s) 289, 291, 400
BccI CCATC 2 cut(s) 130, 543
BclI TGATCA 1 cut(s) 550
BcnI CCSGG 1 cut(s) 700
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 1 cut(s) 567
BisI GCNGC 7 cut(s) 67, 196, 280, 303, 389, 445, 663
BlnI CCTAGG 1 cut(s) 566
BlsI GCNGC 7 cut(s) 68, 197, 281, 304, 390, 446, 664
Bme1390I CCNGG 1 cut(s) 700
Bme18I GGWCC 1 cut(s) 685
BmgT120I GGNCC 2 cut(s) 670, 685
BmiI GGNNCC 2 cut(s) 175, 399
BmrFI CCNGG 1 cut(s) 700
BmsI GCATC 2 cut(s) 217, 472
BpiI GAAGAC 2 cut(s) 444, 591
BpmI CTGGAG 1 cut(s) 416
BpuEI CTTGAG 1 cut(s) 439
BpuMI CCSGG 1 cut(s) 700
Bsa29I ATCGAT 1 cut(s) 411
BsaAI YACGTR 1 cut(s) 475
BsaBI GATNNNNATC 1 cut(s) 366
BsaHI GRCGYC 1 cut(s) 159
BsaJI CCNNGG 2 cut(s) 147, 566
BsaWI WCCGGW 3 cut(s) 162, 461, 687
BsaXI ACNNNNNCTCC 4 cut(s) 31, 61, 443, 473
Bse118I RCCGGY 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 246
Bse3DI GCAATG 4 cut(s) 260, 387, 523, 640
Bse8I GATNNNNATC 1 cut(s) 366
BseAI TCCGGA 1 cut(s) 461
BseCI ATCGAT 1 cut(s) 411
BseDI CCNNGG 2 cut(s) 147, 566
BseGI GGATG 1 cut(s) 487
BseJI GATNNNNATC 1 cut(s) 366
BseMI GCAATG 4 cut(s) 260, 387, 523, 640
BseMII CTCAG 1 cut(s) 226
BseNI ACTGG 1 cut(s) 246
BseSI GKGCMC 1 cut(s) 292
BseXI GCAGC 3 cut(s) 289, 291, 400
Bsh1236I CGCG 3 cut(s) 149, 627, 647
BshFI GGCC 2 cut(s) 140, 671
BshVI ATCGAT 1 cut(s) 411
BsiHKAI GWGCWC 1 cut(s) 220
BsiSI CCGG 5 cut(s) 163, 192, 462, 688, 700
BsmAI GTCTC 1 cut(s) 88
BsmBI CGTCTC 1 cut(s) 88
BsmI GAATGC 1 cut(s) 615
BsnI GGCC 2 cut(s) 140, 671
Bsp1286I GDGCHC 3 cut(s) 220, 292, 402
Bsp13I TCCGGA 1 cut(s) 461
Bsp143I GATC 5 cut(s) 244, 367, 408, 550, 710
Bsp68I TCGCGA 1 cut(s) 647
BspANI GGCC 2 cut(s) 140, 671
BspCNI CTCAG 1 cut(s) 225
BspDI ATCGAT 1 cut(s) 411
BspEI TCCGGA 1 cut(s) 461
BspFNI CGCG 3 cut(s) 149, 627, 647
BspLI GGNNCC 2 cut(s) 175, 399
BspPI GGATC 3 cut(s) 252, 416, 718
BsrBI CCGCTC 1 cut(s) 123
BsrDI GCAATG 4 cut(s) 260, 387, 523, 640
BsrFI RCCGGY 1 cut(s) 191
BsrI ACTGG 1 cut(s) 246
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 2 cut(s) 147, 566
BssMI GATC 5 cut(s) 244, 367, 408, 550, 710
BssNI GRCGYC 1 cut(s) 159
BssSI CACGAG 1 cut(s) 219
BssT1I CCWWGG 1 cut(s) 566
Bst2BI CACGAG 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 654
BstACI GRCGYC 1 cut(s) 159
BstBAI YACGTR 1 cut(s) 475
BstC8I GCNNGC 3 cut(s) 193, 613, 631
BstDEI CTNAG 2 cut(s) 180, 212
BstDSI CCRYGG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 487
BstFNI CGCG 3 cut(s) 149, 627, 647
BstHHI GCGC 1 cut(s) 629
BstKTI GATC 5 cut(s) 247, 370, 411, 553, 713
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 5 cut(s) 244, 367, 408, 550, 710
BstMWI GCNNNNNNNGC 5 cut(s) 146, 397, 491, 612, 668
BstSCI CCNGG 1 cut(s) 698
BstSLI GKGCMC 1 cut(s) 292
BstUI CGCG 3 cut(s) 149, 627, 647
BstV1I GCAGC 3 cut(s) 289, 291, 400
BstV2I GAAGAC 2 cut(s) 444, 591
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
Bsu15I ATCGAT 1 cut(s) 411
BsuRI GGCC 2 cut(s) 140, 671
BsuTUI ATCGAT 1 cut(s) 411
BtgI CCRYGG 1 cut(s) 147
BtgZI GCGATG 1 cut(s) 149
BtsCI GGATG 1 cut(s) 487
BtsIMutI CAGTG 1 cut(s) 220
BtuMI TCGCGA 1 cut(s) 647
Cac8I GCNNGC 3 cut(s) 193, 613, 631
CaiI CAGNNNCTG 1 cut(s) 394
CfoI GCGC 1 cut(s) 629
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 2 cut(s) 670, 685
Cfr42I CCGCGG 1 cut(s) 150
ClaI ATCGAT 1 cut(s) 411
CpoI CGGWCCG 1 cut(s) 685
CseI GACGC 2 cut(s) 380, 617
Csp6I GTAC 1 cut(s) 322
CspI CGGWCCG 1 cut(s) 685
CviAII CATG 2 cut(s) 253, 707
CviJI RGCY 6 cut(s) 140, 191, 282, 400, 459, 671
CviKI_1 RGCY 6 cut(s) 140, 191, 282, 400, 459, 671
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 2 cut(s) 180, 212
DpnI GATC 5 cut(s) 246, 369, 410, 552, 712
DpnII GATC 5 cut(s) 244, 367, 408, 550, 710
Eco130I CCWWGG 1 cut(s) 566
Eco24I GRGCYC 1 cut(s) 402
Eco47I GGWCC 1 cut(s) 685
Eco57I CTGAAG 2 cut(s) 388, 603
Eco72I CACGTG 1 cut(s) 475
EcoRI GAATTC 1 cut(s) 530
EcoT14I CCWWGG 1 cut(s) 566
EcoT38I GRGCYC 1 cut(s) 402
ErhI CCWWGG 1 cut(s) 566
Esp3I CGTCTC 1 cut(s) 88
FaeI CATG 2 cut(s) 256, 710
FaiI YATR 4 cut(s) 254, 549, 599, 708
FatI CATG 2 cut(s) 252, 706
FauI CCCGC 2 cut(s) 307, 366
FbaI TGATCA 1 cut(s) 550
Fnu4HI GCNGC 7 cut(s) 67, 196, 280, 303, 389, 445, 663
FokI GGATG 1 cut(s) 494
FriOI GRGCYC 1 cut(s) 402
Fsp4HI GCNGC 7 cut(s) 67, 196, 280, 303, 389, 445, 663
FspBI CTAG 1 cut(s) 567
GlaI GCGC 1 cut(s) 628
GluI GCNGC 7 cut(s) 67, 196, 280, 303, 389, 445, 663
GsuI CTGGAG 1 cut(s) 416
HaeIII GGCC 2 cut(s) 140, 671
HapII CCGG 5 cut(s) 163, 192, 462, 688, 700
HgaI GACGC 2 cut(s) 380, 617
HhaI GCGC 1 cut(s) 629
Hin1I GRCGYC 1 cut(s) 159
Hin1II CATG 2 cut(s) 256, 710
Hin6I GCGC 1 cut(s) 627
HinP1I GCGC 1 cut(s) 627
HinfI GANTC 1 cut(s) 89
HpaII CCGG 5 cut(s) 163, 192, 462, 688, 700
HphI GGTGA 1 cut(s) 545
Hpy166II GTNNAC 2 cut(s) 79, 358
Hpy188I TCNGA 6 cut(s) 88, 118, 173, 318, 583, 715
Hpy188III TCNNGA 5 cut(s) 248, 395, 406, 462, 646
Hpy8I GTNNAC 2 cut(s) 79, 358
Hpy99I CGWCG 2 cut(s) 161, 611
HpyAV CCTTC 1 cut(s) 412
HpyCH4III ACNGT 1 cut(s) 654
HpyCH4IV ACGT 5 cut(s) 32, 81, 159, 320, 474
HpyCH4V TGCA 3 cut(s) 4, 494, 633
HpyF10VI GCNNNNNNNGC 5 cut(s) 146, 397, 491, 612, 668
HpyF3I CTNAG 2 cut(s) 180, 212
HpySE526I ACGT 5 cut(s) 32, 81, 159, 320, 474
Hsp92I GRCGYC 1 cut(s) 159
Hsp92II CATG 2 cut(s) 256, 710
HspAI GCGC 1 cut(s) 627
Kpn2I TCCGGA 1 cut(s) 461
KroI GCCGGC 1 cut(s) 191
KroNI GCCGGC 1 cut(s) 193
Ksp22I TGATCA 1 cut(s) 550
KspI CCGCGG 1 cut(s) 150
Kzo9I GATC 5 cut(s) 244, 367, 408, 550, 710
LmnI GCTCC 5 cut(s) 128, 131, 257, 397, 464
Lsp1109I GCAGC 3 cut(s) 289, 291, 400
LweI GCATC 2 cut(s) 217, 472
MaeI CTAG 1 cut(s) 567
MaeII ACGT 5 cut(s) 32, 81, 159, 320, 474
MaeIII GTNAC 3 cut(s) 346, 470, 475
MalI GATC 5 cut(s) 246, 369, 410, 552, 712
MbiI CCGCTC 1 cut(s) 123
MboI GATC 5 cut(s) 244, 367, 408, 550, 710
MboII GAAGA 4 cut(s) 87, 103, 449, 596
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 3 cut(s) 220, 292, 402
MluCI AATT 3 cut(s) 273, 530, 544
MmeI TCCRAC 1 cut(s) 125
MnlI CCTC 6 cut(s) 151, 187, 198, 302, 378, 683
MroI TCCGGA 1 cut(s) 461
MroNI GCCGGC 1 cut(s) 191
MseI TTAA 2 cut(s) 12, 573
MslI CAYNNNNRTG 1 cut(s) 213
MspA1I CMGCKG 2 cut(s) 149, 302
MspI CCGG 5 cut(s) 163, 192, 462, 688, 700
MspR9I CCNGG 1 cut(s) 700
Mva1269I GAATGC 1 cut(s) 615
MvnI CGCG 3 cut(s) 149, 627, 647
MwoI GCNNNNNNNGC 5 cut(s) 146, 397, 491, 612, 668
NaeI GCCGGC 1 cut(s) 193
NciI CCSGG 1 cut(s) 700
NdeII GATC 5 cut(s) 244, 367, 408, 550, 710
NgoMIV GCCGGC 1 cut(s) 191
NlaIII CATG 2 cut(s) 256, 710
NlaIV GGNNCC 2 cut(s) 175, 399
NmuCI GTSAC 2 cut(s) 470, 475
NruI TCGCGA 1 cut(s) 647
PctI GAATGC 1 cut(s) 615
PdiI GCCGGC 1 cut(s) 193
PfeI GAWTC 1 cut(s) 89
PflFI GACNNNGTC 1 cut(s) 641
PkrI GCNGC 7 cut(s) 68, 197, 281, 304, 390, 446, 664
PmaCI CACGTG 1 cut(s) 475
PmlI CACGTG 1 cut(s) 475
Ppu21I YACGTR 1 cut(s) 475
PspCI CACGTG 1 cut(s) 475
PspN4I GGNNCC 2 cut(s) 175, 399
PspPI GGNCC 2 cut(s) 670, 685
PstNI CAGNNNCTG 1 cut(s) 394
PsuI RGATCY 1 cut(s) 244
PsyI GACNNNGTC 1 cut(s) 641
RruI TCGCGA 1 cut(s) 647
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
RseI CAYNNNNRTG 1 cut(s) 213
Rsr2I CGGWCCG 1 cut(s) 685
RsrII CGGWCCG 1 cut(s) 685
SacII CCGCGG 1 cut(s) 150
SaqAI TTAA 2 cut(s) 12, 573
SatI GCNGC 7 cut(s) 67, 196, 280, 303, 389, 445, 663
Sau3AI GATC 5 cut(s) 244, 367, 408, 550, 710
Sau96I GGNCC 2 cut(s) 670, 685
ScrFI CCNGG 1 cut(s) 700
SduI GDGCHC 3 cut(s) 220, 292, 402
SetI ASST 9 cut(s) 35, 84, 162, 179, 186, 323, 461, 477, 645
SfaNI GCATC 2 cut(s) 217, 472
Sfr303I CCGCGG 1 cut(s) 150
SgrBI CCGCGG 1 cut(s) 150
SinI GGWCC 1 cut(s) 685
SmiMI CAYNNNNRTG 1 cut(s) 213
SmlI CTYRAG 1 cut(s) 454
SmoI CTYRAG 1 cut(s) 454
Sse9I AATT 3 cut(s) 273, 530, 544
SspMI CTAG 1 cut(s) 567
StyD4I CCNGG 1 cut(s) 698
StyI CCWWGG 1 cut(s) 566
TaaI ACNGT 1 cut(s) 654
TaiI ACGT 5 cut(s) 35, 84, 162, 323, 477
TaqI TCGA 3 cut(s) 156, 249, 411
TaqII GACCGA 1 cut(s) 673
TasI AATT 3 cut(s) 273, 530, 544
TauI GCSGC 4 cut(s) 69, 198, 447, 665
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 2 cut(s) 12, 573
Tru9I TTAA 2 cut(s) 12, 573
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 2 cut(s) 470, 475
TseI GCWGC 3 cut(s) 279, 302, 388
Tsp45I GTSAC 2 cut(s) 470, 475
TspDTI ATGAA 4 cut(s) 96, 345, 437, 543
TspGWI ACGGA 1 cut(s) 494
TspRI CASTG 1 cut(s) 220
Tth111I GACNNNGTC 1 cut(s) 641
VpaK11BI GGWCC 1 cut(s) 685
XapI RAATTY 2 cut(s) 273, 530
XmaJI CCTAGG 1 cut(s) 566
XspI CTAG 1 cut(s) 567
ZraI GACGTC 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.