FvH4_5g07860

Belongs to the peptidase M18 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
4569349 .. 4574014
4666 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g07860.t3

Sequence Viewer

Length: 1437 bp
ATGGCAAAGCAAGAATCAAACTGTGAAGGAAGCTCAGTCGTCTCCGACCTCATCAACTTCCTCAACGCTTCTCCCACTGCTTTCCACGCCGTCGACGAGGCGAAGAAGCGTCTGCAAAGTGCGGGGTACGAGCAGGTTCTGGAGAGAGAGGATTGGAATTTGGAGGCTGGTAAAAAGTACTTCTTCACCAGGAACTACTCCACTATTGTGGCCTTTGCAATCGGTAAAAAATATGTTGCCGGAAATGGATTCCATGTAATTGGAGCTCACACTGATAGTCCATGTCTCAAATTGAAGCCTGTTTCCAAGGTGACTAAAGGTGGGTTCTTGGAAGTGGGAGTCCAAACATACGGAGGCGGCTTGTGGCATACCTGGTTCGACCGTGACTTGACGATAGCAGGGAGAGTGATAGTGAGAGAAGAGAAAGATAGTTCTGTTTCTTACTCGCATAGACTTGTCCGGATTGAGGAGCCCATCATGCGGATTCCTACTCTGGCAATTCACTTGGACAGGGATGTTAGAGAGGCGTTTAAGGTGAACACACAGAGTCACCTTCTTCCTGTCTTGGCAACAGCGGTCAAGGCAGAGCTCAATAAAGGAGTTGAAAAAAGTGGCCAATCTAAGGAGACAACCTCAATCAACTCAAAGCATCACCCGCTTCTGTTACAGCTGCTTGCAGATAAGCTAGGATGTGAACCAGAACATATAAGTGATTTTGAATTGCAAGCGTGTGATACCCAACCAAGTCTAGTAGCCGGTGCAGCAAAAGAATTTGTTTTCTCAGGAAGGCTTGATAATCTCTGCATGTCATTTTGTTCCCTAAAGGCATTGATAGACGCAACAGCTCCTGAAAGCAACCTTGAGGATGAGTGTGGTGTTAGAATGGTGGCTTTGTTTGATCATGAGGAGGTTGGATCGGACTCCGCCCAAGGGGCTGGGTCTCCAGCCATGTTGAATACTCTTTCACGAATTACACATTCCTTTACCACAGATACTAAGCTGCTTGCGAAAGCAATACAGAAAAGCTTTCTTGTATCTGCTGACATGGCCCATGCCTTGCATCCTAATTACATGGATAAACATGAAGACAATCATCAGCCCAAGTTGCATGGGGGACTTGTGATCAAACACAATGCCAATCAGCGTTATGCAACAAATGCTGTCACTTCCTTAATATTCAGGGAGATAGCAATGAATCACAGTCTTCCTGTCCAGGAATTTGTGGTTCGTAATGACATGGCCTGTGGTTCAACCATCGGTCCCATTCTTGCAAGTGGAGTGGGGATACGTACAGTAGACGTAGGTGCTCCGCAGTTGTCAATGCACAGCATACGAGAAATGTGTGCTGTTGATGATGTGAAGCATTCGTATGAGCATTTCAAAGCCTATTACCAAGAGTTCACTCATATGGATGCAAAGATTAAAGTAGATGCGTAG

Protein Analysis

479

Amino Acids

52.68

Weight (kDa)

6.29

Isoelectric Point (pI)

34.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M18 PF02127 23 - 456 5.4e-158 Aminopeptidase I zinc metalloprotease (M18)
Peptidase_M42 PF05343 326 - 448 3.3e-06 M42 glutamyl aminopeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013125)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 124
AccI GTMKAC 2 cut(s) 93, 1296
AccIII TCCGGA 1 cut(s) 459
AciI CCGC 7 cut(s) 122, 357, 481, 575, 656, 924, 1310
AclWI GGATC 1 cut(s) 922
AcoI YGGCCR 1 cut(s) 613
AcsI RAATTY 3 cut(s) 157, 770, 1217
AfaI GTAC 3 cut(s) 128, 179, 1291
AfiI CCNNNNNNNGG 4 cut(s) 466, 480, 622, 930
AgsI TTSAA 6 cut(s) 295, 605, 719, 955, 1251, 1381
AjnI CCWGG 3 cut(s) 188, 371, 1212
AleI CACNNNNGTG 1 cut(s) 206
AluBI AGCT 8 cut(s) 33, 266, 589, 670, 685, 845, 1000, 1026
AluI AGCT 8 cut(s) 33, 266, 589, 670, 685, 845, 1000, 1026
Alw21I GWGCWC 3 cut(s) 268, 591, 1309
Alw26I GTCTC 4 cut(s) 46, 290, 620, 945
AlwI GGATC 1 cut(s) 922
AlwNI CAGNNNCTG 2 cut(s) 139, 848
Aor13HI TCCGGA 1 cut(s) 459
AoxI GGCC 4 cut(s) 210, 613, 1047, 1239
ApeKI GCWGC 3 cut(s) 670, 761, 1000
ApoI RAATTY 3 cut(s) 157, 770, 1217
AspS9I GGNCC 2 cut(s) 1048, 1259
AsuHPI GGTGA 5 cut(s) 178, 322, 542, 547, 644
AvaII GGWCC 1 cut(s) 1259
BalI TGGCCA 1 cut(s) 615
BanII GRGCYC 3 cut(s) 268, 474, 591
BbsI GAAGAC 2 cut(s) 1092, 1196
Bbv12I GWGCWC 3 cut(s) 268, 591, 1309
BbvI GCAGC 3 cut(s) 657, 773, 987
BccI CCATC 2 cut(s) 482, 1262
BceAI ACGGC 1 cut(s) 74
BciT130I CCWGG 3 cut(s) 190, 373, 1214
BciVI GTATCC 1 cut(s) 1278
BclI TGATCA 2 cut(s) 898, 1122
BcoDI GTCTC 4 cut(s) 46, 290, 620, 945
BfaI CTAG 2 cut(s) 686, 749
BfuAI ACCTGC 1 cut(s) 124
BfuI GTATCC 1 cut(s) 1278
BglI GCCNNNNNGGC 1 cut(s) 932
BisI GCNGC 4 cut(s) 358, 671, 762, 1001
BlsI GCNGC 4 cut(s) 359, 672, 763, 1002
BmcAI AGTACT 1 cut(s) 179
Bme1390I CCNGG 3 cut(s) 190, 373, 1214
Bme18I GGWCC 1 cut(s) 1259
BmgT120I GGNCC 2 cut(s) 1048, 1259
BmiI GGNNCC 2 cut(s) 471, 1261
BmrFI CCNGG 3 cut(s) 190, 373, 1214
BmsI GCATC 4 cut(s) 658, 1069, 1402, 1420
BpiI GAAGAC 2 cut(s) 1092, 1196
BplI GAGNNNNNCTC 2 cut(s) 617, 649
BpmI CTGGAG 2 cut(s) 161, 927
BpuEI CTTGAG 1 cut(s) 881
BsaAI YACGTR 1 cut(s) 1289
BsaI GGTCTC 1 cut(s) 945
BsaJI CCNNGG 2 cut(s) 306, 928
BsaWI WCCGGW 1 cut(s) 459
Bsc4I CCNNNNNNNGG 4 cut(s) 466, 480, 622, 930
Bse118I RCCGGY 1 cut(s) 755
Bse3DI GCAATG 1 cut(s) 1197
BseAI TCCGGA 1 cut(s) 459
BseBI CCWGG 3 cut(s) 190, 373, 1214
BseDI CCNNGG 2 cut(s) 306, 928
BseGI GGATG 5 cut(s) 520, 695, 871, 1060, 1417
BseLI CCNNNNNNNGG 4 cut(s) 466, 480, 622, 930
BseMI GCAATG 1 cut(s) 1197
BseMII CTCAG 2 cut(s) 48, 795
BseRI GAGGAG 2 cut(s) 482, 920
BseXI GCAGC 3 cut(s) 657, 773, 987
BseYI CCCAGC 1 cut(s) 935
BsgI GTGCAG 1 cut(s) 780
Bsh1285I CGRYCG 1 cut(s) 382
BshFI GGCC 4 cut(s) 212, 615, 1049, 1241
BsiEI CGRYCG 1 cut(s) 382
BsiHKAI GWGCWC 3 cut(s) 268, 591, 1309
BsiSI CCGG 3 cut(s) 240, 460, 756
BslFI GGGAC 2 cut(s) 1128, 1245
BslI CCNNNNNNNGG 4 cut(s) 466, 480, 622, 930
BsmAI GTCTC 4 cut(s) 46, 290, 620, 945
BsmBI CGTCTC 1 cut(s) 46
BsmFI GGGAC 2 cut(s) 1128, 1245
BsmI GAATGC 1 cut(s) 1363
BsnI GGCC 4 cut(s) 212, 615, 1049, 1241
Bso31I GGTCTC 1 cut(s) 945
Bsp1286I GDGCHC 4 cut(s) 268, 474, 591, 1309
Bsp13I TCCGGA 1 cut(s) 459
Bsp143I GATC 3 cut(s) 898, 914, 1122
BspACI CCGC 7 cut(s) 122, 357, 481, 575, 656, 924, 1310
BspANI GGCC 4 cut(s) 212, 615, 1049, 1241
BspCNI CTCAG 2 cut(s) 47, 794
BspEI TCCGGA 1 cut(s) 459
BspHI TCATGA 1 cut(s) 901
BspLI GGNNCC 2 cut(s) 471, 1261
BspMI ACCTGC 1 cut(s) 124
BspPI GGATC 1 cut(s) 922
BspTNI GGTCTC 1 cut(s) 945
BsrDI GCAATG 1 cut(s) 1197
BsrFI RCCGGY 1 cut(s) 755
BssAI RCCGGY 1 cut(s) 755
BssECI CCNNGG 2 cut(s) 306, 928
BssMI GATC 3 cut(s) 898, 914, 1122
BssT1I CCWWGG 2 cut(s) 306, 928
Bst2UI CCWGG 3 cut(s) 190, 373, 1214
Bst4CI ACNGT 4 cut(s) 23, 383, 1202, 1294
Bst6I CTCTTC 1 cut(s) 414
BstAPI GCANNNNNTGC 1 cut(s) 1157
BstBAI YACGTR 1 cut(s) 1289
BstC8I GCNNGC 3 cut(s) 675, 726, 1005
BstDEI CTNAG 4 cut(s) 34, 621, 781, 996
BstF5I GGATG 5 cut(s) 520, 695, 871, 1060, 1417
BstKTI GATC 3 cut(s) 901, 917, 1125
BstMAI GTCTC 4 cut(s) 46, 290, 620, 945
BstMBI GATC 3 cut(s) 898, 914, 1122
BstMCI CGRYCG 1 cut(s) 382
BstMWI GCNNNNNNNGC 9 cut(s) 86, 478, 581, 655, 761, 932, 1046, 1105, 1157
BstNI CCWGG 3 cut(s) 190, 373, 1214
BstNSI RCATGY 1 cut(s) 808
BstSCI CCNGG 3 cut(s) 188, 371, 1212
BstSNI TACGTA 1 cut(s) 1289
BstV1I GCAGC 3 cut(s) 657, 773, 987
BstV2I GAAGAC 2 cut(s) 1092, 1196
BstXI CCANNNNNNTGG 3 cut(s) 208, 260, 935
BsuI GTATCC 1 cut(s) 1278
BsuRI GGCC 4 cut(s) 212, 615, 1049, 1241
BtsCI GGATG 5 cut(s) 520, 695, 871, 1060, 1417
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 2 cut(s) 75, 270
BveI ACCTGC 1 cut(s) 124
Cac8I GCNNGC 3 cut(s) 675, 726, 1005
CaiI CAGNNNCTG 2 cut(s) 139, 848
CciI TCATGA 1 cut(s) 901
Cfr10I RCCGGY 1 cut(s) 755
Cfr13I GGNCC 2 cut(s) 1048, 1259
CseI GACGC 2 cut(s) 98, 845
CsiI ACCWGGT 1 cut(s) 371
Csp6I GTAC 3 cut(s) 127, 178, 1290
CspCI CAANNNNNGTGG 2 cut(s) 1260, 1295
CviQI GTAC 3 cut(s) 127, 178, 1290
DdeI CTNAG 4 cut(s) 34, 621, 781, 996
DpnI GATC 3 cut(s) 900, 916, 1124
DpnII GATC 3 cut(s) 898, 914, 1122
EaeI YGGCCR 1 cut(s) 613
Eam1104I CTCTTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 414
EciI GGCGGA 1 cut(s) 913
Ecl136II GAGCTC 2 cut(s) 266, 589
Eco105I TACGTA 1 cut(s) 1289
Eco130I CCWWGG 2 cut(s) 306, 928
Eco24I GRGCYC 3 cut(s) 268, 474, 591
Eco31I GGTCTC 1 cut(s) 945
Eco47I GGWCC 1 cut(s) 1259
Eco53kI GAGCTC 2 cut(s) 266, 589
EcoICRI GAGCTC 2 cut(s) 266, 589
EcoRII CCWGG 3 cut(s) 188, 371, 1212
EcoT14I CCWWGG 2 cut(s) 306, 928
EcoT38I GRGCYC 3 cut(s) 268, 474, 591
ErhI CCWWGG 2 cut(s) 306, 928
Esp3I CGTCTC 1 cut(s) 46
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FaqI GGGAC 2 cut(s) 1128, 1245
FauI CCCGC 2 cut(s) 115, 663
FauNDI CATATG 1 cut(s) 1407
FbaI TGATCA 2 cut(s) 898, 1122
FblI GTMKAC 2 cut(s) 93, 1296
Fnu4HI GCNGC 4 cut(s) 358, 671, 762, 1001
FokI GGATG 5 cut(s) 527, 702, 878, 1047, 1424
FriOI GRGCYC 3 cut(s) 268, 474, 591
Fsp4HI GCNGC 4 cut(s) 358, 671, 762, 1001
FspBI CTAG 2 cut(s) 686, 749
GluI GCNGC 4 cut(s) 358, 671, 762, 1001
GsaI CCCAGC 1 cut(s) 939
GsuI CTGGAG 2 cut(s) 161, 927
HaeIII GGCC 4 cut(s) 212, 615, 1049, 1241
HapII CCGG 3 cut(s) 240, 460, 756
HgaI GACGC 2 cut(s) 98, 845
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HindIII AAGCTT 1 cut(s) 1024
HinfI GANTC 7 cut(s) 14, 249, 339, 484, 547, 920, 1195
HpaII CCGG 3 cut(s) 240, 460, 756
HphI GGTGA 5 cut(s) 178, 322, 542, 547, 644
Hpy166II GTNNAC 5 cut(s) 94, 538, 695, 1297, 1401
Hpy188I TCNGA 2 cut(s) 46, 919
Hpy188III TCNNGA 6 cut(s) 140, 460, 783, 848, 902, 966
Hpy8I GTNNAC 5 cut(s) 94, 538, 695, 1297, 1401
Hpy99I CGWCG 2 cut(s) 95, 98
HpyAV CCTTC 3 cut(s) 20, 563, 780
HpyCH4III ACNGT 4 cut(s) 23, 383, 1202, 1294
HpyCH4IV ACGT 2 cut(s) 1288, 1299
HpyF10VI GCNNNNNNNGC 9 cut(s) 86, 478, 581, 655, 761, 932, 1046, 1105, 1157
HpyF3I CTNAG 4 cut(s) 34, 621, 781, 996
HpySE526I ACGT 2 cut(s) 1288, 1299
Kpn2I TCCGGA 1 cut(s) 459
Ksp22I TGATCA 2 cut(s) 898, 1122
Kzo9I GATC 3 cut(s) 898, 914, 1122
LmnI GCTCC 4 cut(s) 263, 469, 850, 1312
Lsp1109I GCAGC 3 cut(s) 657, 773, 987
LweI GCATC 4 cut(s) 658, 1069, 1402, 1420
MabI ACCWGGT 1 cut(s) 371
MaeI CTAG 2 cut(s) 686, 749
MaeII ACGT 2 cut(s) 1288, 1299
MaeIII GTNAC 5 cut(s) 310, 383, 548, 663, 1162
MalI GATC 3 cut(s) 900, 916, 1124
MboI GATC 3 cut(s) 898, 914, 1122
MboII GAAGA 6 cut(s) 115, 175, 431, 548, 1097, 1196
MhlI GDGCHC 4 cut(s) 268, 474, 591, 1309
MlsI TGGCCA 1 cut(s) 615
MluCI AATT 9 cut(s) 157, 258, 290, 498, 719, 770, 969, 1066, 1217
MluNI TGGCCA 1 cut(s) 615
MlyI GAGTC 3 cut(s) 348, 556, 914
MmeI TCCRAC 2 cut(s) 69, 892
Mox20I TGGCCA 1 cut(s) 615
MroI TCCGGA 1 cut(s) 459
MscI TGGCCA 1 cut(s) 615
MseI TTAA 3 cut(s) 531, 1172, 1422
MslI CAYNNNNRTG 5 cut(s) 206, 708, 1368, 1406, 1410
Msp20I TGGCCA 1 cut(s) 615
MspA1I CMGCKG 2 cut(s) 575, 670
MspI CCGG 3 cut(s) 240, 460, 756
MspR9I CCNGG 3 cut(s) 190, 373, 1214
Mva1269I GAATGC 1 cut(s) 1363
MvaI CCWGG 3 cut(s) 190, 373, 1214
MwoI GCNNNNNNNGC 9 cut(s) 86, 478, 581, 655, 761, 932, 1046, 1105, 1157
NdeI CATATG 1 cut(s) 1407
NdeII GATC 3 cut(s) 898, 914, 1122
NlaIV GGNNCC 2 cut(s) 471, 1261
NmuCI GTSAC 4 cut(s) 310, 383, 548, 1162
NspI RCATGY 1 cut(s) 808
OliI CACNNNNGTG 1 cut(s) 206
PagI TCATGA 1 cut(s) 901
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 1 cut(s) 1363
PfeI GAWTC 4 cut(s) 14, 249, 484, 1195
PfoI TCCNGGA 1 cut(s) 1212
PkrI GCNGC 4 cut(s) 359, 672, 763, 1002
PleI GAGTC 3 cut(s) 347, 555, 914
PpsI GAGTC 3 cut(s) 347, 555, 914
Ppu21I YACGTR 1 cut(s) 1289
Psp124BI GAGCTC 2 cut(s) 268, 591
Psp6I CCWGG 3 cut(s) 188, 371, 1212
PspFI CCCAGC 1 cut(s) 935
PspGI CCWGG 3 cut(s) 188, 371, 1212
PspN4I GGNNCC 2 cut(s) 471, 1261
PspPI GGNCC 2 cut(s) 1048, 1259
PstNI CAGNNNCTG 2 cut(s) 139, 848
PvuII CAGCTG 1 cut(s) 670
RsaI GTAC 3 cut(s) 128, 179, 1291
RsaNI GTAC 3 cut(s) 127, 178, 1290
RseI CAYNNNNRTG 5 cut(s) 206, 708, 1368, 1406, 1410
SacI GAGCTC 2 cut(s) 268, 591
SalI GTCGAC 1 cut(s) 92
SaqAI TTAA 3 cut(s) 531, 1172, 1422
SatI GCNGC 4 cut(s) 358, 671, 762, 1001
Sau3AI GATC 3 cut(s) 898, 914, 1122
Sau96I GGNCC 2 cut(s) 1048, 1259
ScaI AGTACT 1 cut(s) 179
SchI GAGTC 3 cut(s) 348, 556, 914
ScrFI CCNGG 3 cut(s) 190, 373, 1214
SduI GDGCHC 4 cut(s) 268, 474, 591, 1309
SexAI ACCWGGT 1 cut(s) 371
SfaNI GCATC 4 cut(s) 658, 1069, 1402, 1420
SgrDI CGTCGACG 1 cut(s) 92
SinI GGWCC 1 cut(s) 1259
SmiMI CAYNNNNRTG 5 cut(s) 206, 708, 1368, 1406, 1410
SmlI CTYRAG 1 cut(s) 860
SmoI CTYRAG 1 cut(s) 860
SnaBI TACGTA 1 cut(s) 1289
Sse9I AATT 9 cut(s) 157, 258, 290, 498, 719, 770, 969, 1066, 1217
SsiI CCGC 7 cut(s) 122, 357, 481, 575, 656, 924, 1310
SspI AATATT 1 cut(s) 1176
SspMI CTAG 2 cut(s) 686, 749
SstI GAGCTC 2 cut(s) 268, 591
StyD4I CCNGG 3 cut(s) 188, 371, 1212
StyI CCWWGG 2 cut(s) 306, 928
TaaI ACNGT 4 cut(s) 23, 383, 1202, 1294
TaiI ACGT 2 cut(s) 1291, 1302
TaqI TCGA 2 cut(s) 93, 378
TaqII GACCGA 1 cut(s) 1247
TasI AATT 9 cut(s) 157, 258, 290, 498, 719, 770, 969, 1066, 1217
TatI WGTACW 1 cut(s) 177
TauI GCSGC 1 cut(s) 360
TfiI GAWTC 4 cut(s) 14, 249, 484, 1195
Tru1I TTAA 3 cut(s) 531, 1172, 1422
Tru9I TTAA 3 cut(s) 531, 1172, 1422
TscAI CASTG 2 cut(s) 82, 277
TseFI GTSAC 4 cut(s) 310, 383, 548, 1162
TseI GCWGC 3 cut(s) 670, 761, 1000
Tsp45I GTSAC 4 cut(s) 310, 383, 548, 1162
TspDTI ATGAA 2 cut(s) 1098, 1208
TspGWI ACGGA 1 cut(s) 366
TspRI CASTG 2 cut(s) 82, 277
VpaK11BI GGWCC 1 cut(s) 1259
XapI RAATTY 3 cut(s) 157, 770, 1217
XceI RCATGY 1 cut(s) 808
XmiI GTMKAC 2 cut(s) 93, 1296
XspI CTAG 2 cut(s) 686, 749
ZrmI AGTACT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.