MD14G1160100.v1.1

Belongs to the peptidase M18 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
25392216 .. 25396054
3839 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1160100.v1.1.491

Sequence Viewer

Length: 1461 bp
ATGGCAAAGCAAGAACCAAACTCCGTCGTCTCTGATCTCATCAGCTTCCTAAACGCCGCCCCCACCGCCTTCCACGCCGTCGACGAGGCGAAGAAGCTGCTGCGAAGCGCGGGGTACGAGCAAGTTTTGGAGAGGGAGGATTGGAAATTGGAAGCTGGTAAAAAGTATTTCTTCACCAGGAATTACTCCACCATTGTTGCTTTCGCAATCGGAAAAAAGTATGTTGCTGGAAACGGATTTCATATAGTTGGTGCTCATACTGATAGTCCTTGTCTCAAATTGAAACCGGTTTCCAAGGTTGCTAAAGGCGGGTTCTTGGAAGTGGGTGTCCAAACTTATGGTAGTGGCTTGTGGCATACATGGTTCGACCGTGACTTGACGATTGCAGGCAGGGTGATAGTGACAGAAGAAAAGGATGGCTCTGTTTCGTATTCACATAAACTTGTTAGAATTGAGGAGCCCATAATGCGGGTCCCTACTCTGGCAATTCACTTAGACAGGGATGTTAAAGATGCATTCAAGGTGAATGCACAGACGCATCTTCTTCCCGTCTTGGCAACGGCAGTCAAGGCCGAGCTCAATAAAGTGGTTGCTGAAGATGGTGGGGCTAATAGTGATGCTCAGAATGATGGGAAGAAATCCAATGAGAAAACAACCTCAATTGCATCGAAGCATCACTCACTTCTACTACAGCTACTTGCAGATCAGCTTGGATGTGAACCGGAACATATATCTGATTTTGAATTGCAAGCATGTGATACTCAACCAAGCATAATAGCTGGTGCCGCAAAAGAATTTATTTTCTCAGGAAGGCTTGATAATCTTTGCATGTCATTTTGTTCTCTTAAGGCATTGATAGATGCAACATCTTCTGATAGCAACCTTGAAGATGAGTCTGGTGTTAGAATGGTGGCTTTGTTTGATCATGAGGAGGTCGGATCTGATTCTGCCCAGGGCGCTGGGTCTCCAGCCATGTTGAATACTCTTTCACGAATTACAAGTTCCTTCACAACAGATTCTAAGCTGCTCGAGAAAGCTATTCAGAGGAGCTTTCTTGTATCTGCTGACATGGCACATGCCTTACATCCTAATTATATGGACAAACACGAAGAGAATCACCAACCCAAGTTTCATGGGGGCCTTGTGATCAAACACAATGCAAATCAACGCTACGCAACCAATGCCGTCACTGCATTAATATTCAGGGAGATAGCAAGGAATCACAGCCTTCCTGTCCAGGACTTTGTAGTTCGTAATGACATGGCATGCGGTTCGACCATCGGTCCCATTCTGGCAAGTGGAGTGGGAATACGAACAGTTGATGTAGGTGCACCACAGCTGTCGATGCACAGCATACGAGAAATGTGTGCTGTTGATGATGTGAAGCATTCATACGAGCATTTCAAAGCCTTCTTCCAGGAGTTCACTCATCTGGATGCAAAGATTAAAGTGGACGCGTAG

Protein Analysis

487

Amino Acids

53.23

Weight (kDa)

6.12

Isoelectric Point (pI)

33.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M18 PF02127 16 - 472 5.8e-162 Aminopeptidase I zinc metalloprotease (M18)
Peptidase_M42 PF05343 343 - 464 1e-05 M42 glutamyl aminopeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013125)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 782
AccI GTMKAC 1 cut(s) 81
AccII CGCG 2 cut(s) 110, 1457
AciI CCGC 7 cut(s) 57, 66, 110, 309, 469, 786, 1269
AclWI GGATC 1 cut(s) 946
AcsI RAATTY 1 cut(s) 794
AcuI CTGAAG 1 cut(s) 615
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 2 cut(s) 468, 481
AflII CTTAAG 1 cut(s) 845
AflIII ACRYGT 1 cut(s) 1455
AgeI ACCGGT 1 cut(s) 286
AgsI TTSAA 6 cut(s) 283, 520, 743, 887, 979, 1405
AhdI GACNNNNNGTC 1 cut(s) 1281
AjnI CCWGG 4 cut(s) 176, 951, 1236, 1416
AjuI GAANNNNNNNTTGG 2 cut(s) 1113, 1145
Alw21I GWGCWC 3 cut(s) 256, 579, 1333
Alw26I GTCTC 3 cut(s) 34, 278, 969
Alw44I GTGCAC 1 cut(s) 1329
AlwI GGATC 1 cut(s) 946
Ama87I CYCGRG 1 cut(s) 1028
AoxI GGCC 2 cut(s) 570, 1138
ApaLI GTGCAC 1 cut(s) 1329
ApeKI GCWGC 3 cut(s) 97, 100, 1024
ApoI RAATTY 1 cut(s) 794
AseI ATTAAT 1 cut(s) 1196
AsiGI ACCGGT 1 cut(s) 286
AspLEI GCGC 2 cut(s) 110, 959
AspS9I GGNCC 3 cut(s) 472, 1138, 1283
AsuHPI GGTGA 4 cut(s) 166, 406, 535, 1109
AvaI CYCGRG 1 cut(s) 1028
AvaII GGWCC 2 cut(s) 472, 1283
BaeGI GKGCMC 1 cut(s) 1333
BanI GGYRCC 1 cut(s) 782
BanII GRGCYC 2 cut(s) 462, 579
BarI GAAGNNNNNNTAC 2 cut(s) 1376, 1408
Bbv12I GWGCWC 3 cut(s) 256, 579, 1333
BbvI GCAGC 3 cut(s) 84, 87, 1011
BccI CCATC 4 cut(s) 410, 593, 623, 1286
BceAI ACGGC 3 cut(s) 62, 576, 1169
BcgI CGANNNNNNTGC 4 cut(s) 79, 113, 1254, 1288
BciT130I CCWGG 4 cut(s) 178, 953, 1238, 1418
BclI TGATCA 2 cut(s) 922, 1146
BcoDI GTCTC 3 cut(s) 34, 278, 969
BfmI CTRYAG 1 cut(s) 689
BfoI RGCGCY 1 cut(s) 960
BfrI CTTAAG 1 cut(s) 845
BisI GCNGC 5 cut(s) 57, 98, 101, 786, 1025
BlsI GCNGC 5 cut(s) 58, 99, 102, 787, 1026
Bme1390I CCNGG 4 cut(s) 178, 953, 1238, 1418
Bme18I GGWCC 2 cut(s) 472, 1283
BmeRI GACNNNNNGTC 1 cut(s) 1281
BmeT110I CYCGRG 1 cut(s) 1028
BmgT120I GGNCC 3 cut(s) 472, 1138, 1283
BmiI GGNNCC 6 cut(s) 459, 473, 474, 784, 1139, 1285
BmrFI CCNGG 4 cut(s) 178, 953, 1238, 1418
BmsI GCATC 8 cut(s) 502, 547, 607, 674, 682, 850, 1335, 1426
BpmI CTGGAG 1 cut(s) 951
BsaI GGTCTC 1 cut(s) 969
BsaJI CCNNGG 3 cut(s) 294, 951, 952
BsaWI WCCGGW 2 cut(s) 286, 721
Bsc4I CCNNNNNNNGG 2 cut(s) 468, 481
Bse118I RCCGGY 1 cut(s) 286
BseBI CCWGG 4 cut(s) 178, 953, 1238, 1418
BseDI CCNNGG 3 cut(s) 294, 951, 952
BseGI GGATG 5 cut(s) 421, 508, 719, 1084, 1441
BseLI CCNNNNNNNGG 2 cut(s) 468, 481
BseMII CTCAG 2 cut(s) 635, 819
BseRI GAGGAG 3 cut(s) 470, 944, 1060
BseSI GKGCMC 1 cut(s) 1333
BseXI GCAGC 3 cut(s) 84, 87, 1011
BseYI CCCAGC 1 cut(s) 959
Bsh1236I CGCG 2 cut(s) 110, 1457
Bsh1285I CGRYCG 1 cut(s) 370
BshFI GGCC 2 cut(s) 572, 1140
BshNI GGYRCC 1 cut(s) 782
BshTI ACCGGT 1 cut(s) 286
BsiEI CGRYCG 1 cut(s) 370
BsiHKAI GWGCWC 3 cut(s) 256, 579, 1333
BsiHKCI CYCGRG 1 cut(s) 1028
BsiSI CCGG 2 cut(s) 287, 722
BslFI GGGAC 2 cut(s) 458, 1269
BslI CCNNNNNNNGG 2 cut(s) 468, 481
BsmAI GTCTC 3 cut(s) 34, 278, 969
BsmBI CGTCTC 1 cut(s) 34
BsmFI GGGAC 2 cut(s) 458, 1269
BsmI GAATGC 3 cut(s) 515, 532, 1387
BsnI GGCC 2 cut(s) 572, 1140
Bso31I GGTCTC 1 cut(s) 969
BsoBI CYCGRG 1 cut(s) 1028
Bsp1286I GDGCHC 4 cut(s) 256, 462, 579, 1333
Bsp143I GATC 5 cut(s) 34, 703, 922, 938, 1146
BspACI CCGC 7 cut(s) 57, 66, 110, 309, 469, 786, 1269
BspANI GGCC 2 cut(s) 572, 1140
BspCNI CTCAG 2 cut(s) 634, 818
BspFNI CGCG 2 cut(s) 110, 1457
BspHI TCATGA 1 cut(s) 925
BspLI GGNNCC 6 cut(s) 459, 473, 474, 784, 1139, 1285
BspPI GGATC 1 cut(s) 946
BspT107I GGYRCC 1 cut(s) 782
BspTI CTTAAG 1 cut(s) 845
BspTNI GGTCTC 1 cut(s) 969
BsrFI RCCGGY 1 cut(s) 286
BssAI RCCGGY 1 cut(s) 286
BssECI CCNNGG 3 cut(s) 294, 951, 952
BssMI GATC 5 cut(s) 34, 703, 922, 938, 1146
BssT1I CCWWGG 1 cut(s) 294
Bst2UI CCWGG 4 cut(s) 178, 953, 1238, 1418
Bst4CI ACNGT 2 cut(s) 371, 1318
Bst6I CTCTTC 1 cut(s) 1104
BstAFI CTTAAG 1 cut(s) 845
BstAPI GCANNNNNTGC 1 cut(s) 1181
BstC8I GCNNGC 3 cut(s) 388, 750, 1267
BstDEI CTNAG 4 cut(s) 493, 621, 805, 1020
BstF5I GGATG 5 cut(s) 421, 508, 719, 1084, 1441
BstFNI CGCG 2 cut(s) 110, 1457
BstH2I RGCGCY 1 cut(s) 960
BstHHI GCGC 2 cut(s) 110, 959
BstKTI GATC 5 cut(s) 37, 706, 925, 941, 1149
BstMAI GTCTC 3 cut(s) 34, 278, 969
BstMBI GATC 5 cut(s) 34, 703, 922, 938, 1146
BstMCI CGRYCG 1 cut(s) 370
BstNI CCWGG 4 cut(s) 178, 953, 1238, 1418
BstNSI RCATGY 4 cut(s) 756, 832, 1079, 1269
BstSCI CCNGG 4 cut(s) 176, 951, 1236, 1416
BstSFI CTRYAG 1 cut(s) 689
BstSLI GKGCMC 1 cut(s) 1333
BstUI CGCG 2 cut(s) 110, 1457
BstV1I GCAGC 3 cut(s) 84, 87, 1011
BstX2I RGATCY 1 cut(s) 938
BstXI CCANNNNNNTGG 2 cut(s) 338, 959
BstYI RGATCY 1 cut(s) 938
BsuRI GGCC 2 cut(s) 572, 1140
BtsCI GGATG 5 cut(s) 421, 508, 719, 1084, 1441
BtsI GCAGTG 1 cut(s) 1188
BtsIMutI CAGTG 1 cut(s) 1188
Cac8I GCNNGC 3 cut(s) 388, 750, 1267
CciI TCATGA 1 cut(s) 925
CfoI GCGC 2 cut(s) 110, 959
Cfr10I RCCGGY 1 cut(s) 286
Cfr13I GGNCC 3 cut(s) 472, 1138, 1283
CseI GACGC 1 cut(s) 544
Csp6I GTAC 1 cut(s) 115
CspAI ACCGGT 1 cut(s) 286
CspCI CAANNNNNGTGG 4 cut(s) 178, 213, 1284, 1319
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 4 cut(s) 493, 621, 805, 1020
DpnI GATC 5 cut(s) 36, 705, 924, 940, 1148
DpnII GATC 5 cut(s) 34, 703, 922, 938, 1146
DriI GACNNNNNGTC 1 cut(s) 1281
Eam1104I CTCTTC 1 cut(s) 1104
Eam1105I GACNNNNNGTC 1 cut(s) 1281
EarI CTCTTC 1 cut(s) 1104
Ecl136II GAGCTC 1 cut(s) 577
Eco130I CCWWGG 1 cut(s) 294
Eco24I GRGCYC 2 cut(s) 462, 579
Eco31I GGTCTC 1 cut(s) 969
Eco47I GGWCC 2 cut(s) 472, 1283
Eco53kI GAGCTC 1 cut(s) 577
Eco57I CTGAAG 1 cut(s) 615
Eco88I CYCGRG 1 cut(s) 1028
EcoICRI GAGCTC 1 cut(s) 577
EcoO109I RGGNCCY 2 cut(s) 472, 1138
EcoRII CCWGG 4 cut(s) 176, 951, 1236, 1416
EcoT14I CCWWGG 1 cut(s) 294
EcoT22I ATGCAT 1 cut(s) 517
EcoT38I GRGCYC 2 cut(s) 462, 579
ErhI CCWWGG 1 cut(s) 294
Esp3I CGTCTC 1 cut(s) 34
FalI AAGNNNNNCTT 2 cut(s) 155, 187
FaqI GGGAC 2 cut(s) 458, 1269
FauI CCCGC 3 cut(s) 103, 302, 462
FbaI TGATCA 2 cut(s) 922, 1146
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 5 cut(s) 57, 98, 101, 786, 1025
FokI GGATG 5 cut(s) 428, 515, 726, 1071, 1448
FriOI GRGCYC 2 cut(s) 462, 579
Fsp4HI GCNGC 5 cut(s) 57, 98, 101, 786, 1025
GlaI GCGC 2 cut(s) 109, 958
GluI GCNGC 5 cut(s) 57, 98, 101, 786, 1025
GsaI CCCAGC 1 cut(s) 963
GsuI CTGGAG 1 cut(s) 951
HaeII RGCGCY 1 cut(s) 960
HaeIII GGCC 2 cut(s) 572, 1140
HapII CCGG 2 cut(s) 287, 722
HgaI GACGC 1 cut(s) 544
HhaI GCGC 2 cut(s) 110, 959
Hin6I GCGC 2 cut(s) 108, 957
HinP1I GCGC 2 cut(s) 108, 957
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HinfI GANTC 5 cut(s) 893, 944, 1016, 1114, 1219
HpaII CCGG 2 cut(s) 287, 722
HphI GGTGA 4 cut(s) 166, 406, 535, 1109
Hpy166II GTNNAC 5 cut(s) 82, 719, 1331, 1425, 1453
Hpy188I TCNGA 8 cut(s) 34, 212, 624, 736, 874, 938, 943, 1044
Hpy188III TCNNGA 5 cut(s) 807, 926, 990, 1030, 1433
Hpy8I GTNNAC 5 cut(s) 82, 719, 1331, 1425, 1453
Hpy99I CGWCG 3 cut(s) 29, 83, 86
HpyAV CCTTC 5 cut(s) 79, 804, 1015, 1238, 1420
HpyCH4III ACNGT 2 cut(s) 371, 1318
HpyF3I CTNAG 4 cut(s) 493, 621, 805, 1020
HspAI GCGC 2 cut(s) 108, 957
KflI GGGWCCC 1 cut(s) 472
Ksp22I TGATCA 2 cut(s) 922, 1146
Kzo9I GATC 5 cut(s) 34, 703, 922, 938, 1146
LmnI GCTCC 2 cut(s) 457, 1047
Lsp1109I GCAGC 3 cut(s) 84, 87, 1011
LweI GCATC 8 cut(s) 502, 547, 607, 674, 682, 850, 1335, 1426
MaeIII GTNAC 3 cut(s) 371, 400, 1186
MalI GATC 5 cut(s) 36, 705, 924, 940, 1148
MboI GATC 5 cut(s) 34, 703, 922, 938, 1146
MfeI CAATTG 1 cut(s) 660
MflI RGATCY 1 cut(s) 938
MhlI GDGCHC 4 cut(s) 256, 462, 579, 1333
MluI ACGCGT 1 cut(s) 1455
MlyI GAGTC 1 cut(s) 902
MmeI TCCRAC 1 cut(s) 916
MnlI CCTC 8 cut(s) 79, 126, 130, 448, 667, 922, 925, 1038
Mph1103I ATGCAT 1 cut(s) 517
MseI TTAA 4 cut(s) 507, 846, 1196, 1446
MslI CAYNNNNRTG 1 cut(s) 1434
MspA1I CMGCKG 1 cut(s) 1339
MspCI CTTAAG 1 cut(s) 845
MspI CCGG 2 cut(s) 287, 722
MspR9I CCNGG 4 cut(s) 178, 953, 1238, 1418
MunI CAATTG 1 cut(s) 660
Mva1269I GAATGC 3 cut(s) 515, 532, 1387
MvaI CCWGG 4 cut(s) 178, 953, 1238, 1418
MvnI CGCG 2 cut(s) 110, 1457
NdeII GATC 5 cut(s) 34, 703, 922, 938, 1146
NlaIV GGNNCC 6 cut(s) 459, 473, 474, 784, 1139, 1285
NmeAIII GCCGAG 1 cut(s) 598
NmuCI GTSAC 3 cut(s) 371, 400, 1186
NsiI ATGCAT 1 cut(s) 517
NspI RCATGY 4 cut(s) 756, 832, 1079, 1269
PaeI GCATGC 1 cut(s) 1269
PaeR7I CTCGAG 1 cut(s) 1028
PagI TCATGA 1 cut(s) 925
PasI CCCWGGG 1 cut(s) 952
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PctI GAATGC 3 cut(s) 515, 532, 1387
PfeI GAWTC 4 cut(s) 944, 1016, 1114, 1219
PfoI TCCNGGA 2 cut(s) 1236, 1416
PinAI ACCGGT 1 cut(s) 286
PkrI GCNGC 5 cut(s) 58, 99, 102, 787, 1026
PleI GAGTC 1 cut(s) 901
PpsI GAGTC 1 cut(s) 901
PpuMI RGGWCCY 1 cut(s) 472
PshBI ATTAAT 1 cut(s) 1196
Psp124BI GAGCTC 1 cut(s) 579
Psp5II RGGWCCY 1 cut(s) 472
Psp6I CCWGG 4 cut(s) 176, 951, 1236, 1416
PspFI CCCAGC 1 cut(s) 959
PspGI CCWGG 4 cut(s) 176, 951, 1236, 1416
PspN4I GGNNCC 6 cut(s) 459, 473, 474, 784, 1139, 1285
PspPI GGNCC 3 cut(s) 472, 1138, 1283
PspPPI RGGWCCY 1 cut(s) 472
PsuI RGATCY 1 cut(s) 938
PvuII CAGCTG 1 cut(s) 1339
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 1434
SacI GAGCTC 1 cut(s) 579
SalI GTCGAC 1 cut(s) 80
SaqAI TTAA 4 cut(s) 507, 846, 1196, 1446
SatI GCNGC 5 cut(s) 57, 98, 101, 786, 1025
Sau3AI GATC 5 cut(s) 34, 703, 922, 938, 1146
Sau96I GGNCC 3 cut(s) 472, 1138, 1283
SchI GAGTC 1 cut(s) 902
ScrFI CCNGG 4 cut(s) 178, 953, 1238, 1418
SduI GDGCHC 4 cut(s) 256, 462, 579, 1333
SfaNI GCATC 8 cut(s) 502, 547, 607, 674, 682, 850, 1335, 1426
SfcI CTRYAG 1 cut(s) 689
Sfr274I CTCGAG 1 cut(s) 1028
SgrDI CGTCGACG 1 cut(s) 80
SinI GGWCC 2 cut(s) 472, 1283
SlaI CTCGAG 1 cut(s) 1028
SmiMI CAYNNNNRTG 1 cut(s) 1434
SmlI CTYRAG 2 cut(s) 845, 1028
SmoI CTYRAG 2 cut(s) 845, 1028
SphI GCATGC 1 cut(s) 1269
SsiI CCGC 7 cut(s) 57, 66, 110, 309, 469, 786, 1269
SspI AATATT 1 cut(s) 1200
SstI GAGCTC 1 cut(s) 579
StyD4I CCNGG 4 cut(s) 176, 951, 1236, 1416
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 2 cut(s) 371, 1318
TaqI TCGA 6 cut(s) 81, 366, 668, 1029, 1274, 1343
TaqII GACCGA 1 cut(s) 1271
TauI GCSGC 2 cut(s) 59, 788
TfiI GAWTC 4 cut(s) 944, 1016, 1114, 1219
Tru1I TTAA 4 cut(s) 507, 846, 1196, 1446
Tru9I TTAA 4 cut(s) 507, 846, 1196, 1446
TscAI CASTG 1 cut(s) 1195
TseFI GTSAC 3 cut(s) 371, 400, 1186
TseI GCWGC 3 cut(s) 97, 100, 1024
Tsp45I GTSAC 3 cut(s) 371, 400, 1186
TspDTI ATGAA 3 cut(s) 230, 1121, 1380
TspGWI ACGGA 2 cut(s) 13, 249
TspRI CASTG 1 cut(s) 1195
Vha464I CTTAAG 1 cut(s) 845
VneI GTGCAC 1 cut(s) 1329
VpaK11BI GGWCC 2 cut(s) 472, 1283
VspI ATTAAT 1 cut(s) 1196
XapI RAATTY 1 cut(s) 794
XceI RCATGY 4 cut(s) 756, 832, 1079, 1269
XhoI CTCGAG 1 cut(s) 1028
XmiI GTMKAC 1 cut(s) 81
Zsp2I ATGCAT 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.