Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0013125

Physical Location & Seq

Genomic Coordinates Reverse (-)

8595713 .. 8600074

Gene Structure 4362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG115000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGCAAAGCAAGAATCAAACTGTGTAGGAAGCTCAGTCGTCTCTGACCTCATCAACTTCCTCAACGCTTGTCCCACTGCTTTTCACGCCGTCGACGAGGCGAAGAAGCGTCTGCAAAACGCGGGGTACGAGCAGGTTTTGGAGAGAGAGGATTGGAAATTGGAGGCTGGTAAAAAGTACTACTTCACCAGGAACTACTCCACCATTGTGGCTTTTGCAATCGGCAAAAAATTTGTTGCCGGAAATGGATTCCATATAGTTGGTGCTCATACTGATAGTCCTTGTCTCAAATTGAAGCCTGTTTCCAAGGTAGCTAAGGGTGGGTACTTGGAAGTGGGAGTCCAAACATACGGAGGTGGCTTGTGGCATACCTGGTTCGACCGTGACTTGACGATTGCAGGAAGGGTGATAGTAAGAGAAGAGAAAGATGGTGTTGTTTCTTACTCACATAGACTTGTCCGGATTGAGGAGCCCATCATGCGGATTCCTACTCTGGCAATTCACCTGGACAGGGATGTTAGAGAGGCGTTTAAGGTGAATGCACAGAGTCACCTTCTTCCTGTCTTGGCAACAGCAGTCAAGGCAGAGCTCAATAAAGTAGTTGCAGAAAGTGGCCAATCTAAGGAGACAACCTCAGTTAACTCAAATCATCACTCGCTTCTGTTACAGCTGCTTGCAGATAAGCTTGGGTGTGAACCAGAACATATAAGTGATTTTGAATTGCAAGCATGTGATACTCAACCAAGTCTAGTAGCCGGTGCAGCAAAAGAATTTATTTTCTCAGGAAGGCTTGATAATCTCTGCATGTCGTTTTGTTCCCTAAAGGCATTGATAGACGCAACAGCTCCTGAAAGCAACCTTGAGGATGAGACTGGTGTTAGAATGGTGGCTTTGTTTGATCACGAGGAGGTTGGATCTGACTCCGCCCAAGGGGCTGGGTCTCCAGCCATGTTGAATACTCTTTCACGAATTACACATTCCTTTACCACAGATTCTAAGCTGCTTGAGAAAGCAATACAGAGAAGCTTTCTTGTATCTGCTGACATGGCCCATGCCTTGCATCCTAATTATATGGATAAACATGAAGACAATCATCAGCCCAAGTTGCATGGGGGACTTGTGATCAAACACAATGCAAATCAACGTTATGCAACCAATGCTGTCACTTCCTTAATATTCAGGGAGATAGCAAGGAATCACAGCCTTCCTGTCCAGGTCAGCTTATCCTGTTCTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009987 GO:0016787 GO:0019538 GO:0034641 GO:0042802 GO:0043170 GO:0043603 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070006 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M18

Protein Analysis

412

Amino Acids

45.32

Weight (kDa)

6.44

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M18	PF02127	20 - 407	2e-132	Aminopeptidase I zinc metalloprotease (M18)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60160
fragaria_vesca	FvH4_5g07860 FvH4_5g07860 FvH4_5g07860
malus_domestica	MD06G1145400.v1.1 MD14G1160100.v1.1
prunus_persica	Prupe.5G153700_v2.0.a1
pyrus_communis	pycom06g13470 pycom14g13360
rosa_chinensis	RchiOBHm_Chr7g0190601
rosa_laevigata	RLG00000004511
rosa_roxburghii	Rroxscaffold_3G00264470
rosa_rugosa	Rorug06G0505600
rosa_samantha	Rh7AG112200 Rh7BG115000 Rh7CG117100 Rh7DG116200
rosa_wichuraiana	Rw7G009790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	124
AccI	GTMKAC	1 cut(s)	93
AccII	CGCG	1 cut(s)	122
AccIII	TCCGGA	1 cut(s)	459
AciI	CCGC	3 cut(s)	122, 481, 924
AclI	AACGTT	1 cut(s)	1144
AclWI	GGATC	1 cut(s)	922
AcoI	YGGCCR	1 cut(s)	613
AcsI	RAATTY	2 cut(s)	230, 770
AfaI	GTAC	3 cut(s)	128, 179, 326
AfiI	CCNNNNNNNGG	5 cut(s)	466, 480, 511, 622, 930
AgsI	TTSAA	3 cut(s)	295, 719, 955
AjnI	CCWGG	4 cut(s)	188, 371, 504, 1212
AleI	CACNNNNGTG	1 cut(s)	206
AluBI	AGCT	9 cut(s)	33, 314, 589, 670, 685, 845, 1000, 1026, 1221
AluI	AGCT	9 cut(s)	33, 314, 589, 670, 685, 845, 1000, 1026, 1221
Alw21I	GWGCWC	2 cut(s)	268, 591
Alw26I	GTCTC	5 cut(s)	46, 290, 620, 863, 945
AlwI	GGATC	1 cut(s)	922
AlwNI	CAGNNNCTG	1 cut(s)	848
Aor13HI	TCCGGA	1 cut(s)	459
AoxI	GGCC	2 cut(s)	613, 1047
ApeKI	GCWGC	3 cut(s)	670, 761, 1000
ApoI	RAATTY	2 cut(s)	230, 770
AspS9I	GGNCC	1 cut(s)	1048
AsuHPI	GGTGA	5 cut(s)	178, 418, 494, 542, 547
BalI	TGGCCA	1 cut(s)	615
BanII	GRGCYC	2 cut(s)	474, 591
BauI	CACGAG	1 cut(s)	902
BbsI	GAAGAC	1 cut(s)	1092
Bbv12I	GWGCWC	2 cut(s)	268, 591
BbvI	GCAGC	3 cut(s)	657, 773, 987
BccI	CCATC	2 cut(s)	422, 482
BceAI	ACGGC	1 cut(s)	74
BciT130I	CCWGG	4 cut(s)	190, 373, 506, 1214
BclI	TGATCA	2 cut(s)	898, 1122
BcoDI	GTCTC	5 cut(s)	46, 290, 620, 863, 945
BfaI	CTAG	2 cut(s)	749, 1237
BfuAI	ACCTGC	1 cut(s)	124
BglI	GCCNNNNNGGC	1 cut(s)	932
BisI	GCNGC	3 cut(s)	671, 762, 1001
BlsI	GCNGC	3 cut(s)	672, 763, 1002
BmcAI	AGTACT	1 cut(s)	179
Bme1390I	CCNGG	4 cut(s)	190, 373, 506, 1214
BmgT120I	GGNCC	1 cut(s)	1048
BmiI	GGNNCC	1 cut(s)	471
BmrFI	CCNGG	4 cut(s)	190, 373, 506, 1214
BmsI	GCATC	1 cut(s)	1069
BpiI	GAAGAC	1 cut(s)	1092
BplI	GAGNNNNNCTC	2 cut(s)	617, 649
BpmI	CTGGAG	1 cut(s)	927
Bpu10I	CCTNAGC	1 cut(s)	315
BpuEI	CTTGAG	2 cut(s)	881, 1025
BsaI	GGTCTC	1 cut(s)	945
BsaJI	CCNNGG	2 cut(s)	306, 928
BsaWI	WCCGGW	1 cut(s)	459
Bsc4I	CCNNNNNNNGG	5 cut(s)	466, 480, 511, 622, 930
Bse118I	RCCGGY	1 cut(s)	755
Bse1I	ACTGG	1 cut(s)	877
BseAI	TCCGGA	1 cut(s)	459
BseBI	CCWGG	4 cut(s)	190, 373, 506, 1214
BseDI	CCNNGG	2 cut(s)	306, 928
BseGI	GGATG	3 cut(s)	520, 871, 1060
BseLI	CCNNNNNNNGG	5 cut(s)	466, 480, 511, 622, 930
BseMII	CTCAG	3 cut(s)	48, 648, 795
BseNI	ACTGG	1 cut(s)	877
BseRI	GAGGAG	2 cut(s)	482, 920
BseXI	GCAGC	3 cut(s)	657, 773, 987
BseYI	CCCAGC	1 cut(s)	935
BsgI	GTGCAG	1 cut(s)	780
Bsh1236I	CGCG	1 cut(s)	122
Bsh1285I	CGRYCG	1 cut(s)	382
BshFI	GGCC	2 cut(s)	615, 1049
BsiEI	CGRYCG	1 cut(s)	382
BsiHKAI	GWGCWC	2 cut(s)	268, 591
BsiSI	CCGG	3 cut(s)	240, 460, 756
BslFI	GGGAC	2 cut(s)	57, 1128
BslI	CCNNNNNNNGG	5 cut(s)	466, 480, 511, 622, 930
BsmAI	GTCTC	5 cut(s)	46, 290, 620, 863, 945
BsmBI	CGTCTC	1 cut(s)	46
BsmFI	GGGAC	2 cut(s)	57, 1128
BsmI	GAATGC	1 cut(s)	544
BsnI	GGCC	2 cut(s)	615, 1049
Bso31I	GGTCTC	1 cut(s)	945
Bsp1286I	GDGCHC	3 cut(s)	268, 474, 591
Bsp13I	TCCGGA	1 cut(s)	459
Bsp143I	GATC	3 cut(s)	898, 914, 1122
BspACI	CCGC	3 cut(s)	122, 481, 924
BspANI	GGCC	2 cut(s)	615, 1049
BspCNI	CTCAG	3 cut(s)	47, 647, 794
BspEI	TCCGGA	1 cut(s)	459
BspFNI	CGCG	1 cut(s)	122
BspLI	GGNNCC	1 cut(s)	471
BspMI	ACCTGC	1 cut(s)	124
BspPI	GGATC	1 cut(s)	922
BspTNI	GGTCTC	1 cut(s)	945
BsrFI	RCCGGY	1 cut(s)	755
BsrI	ACTGG	1 cut(s)	877
BssAI	RCCGGY	1 cut(s)	755
BssECI	CCNNGG	2 cut(s)	306, 928
BssMI	GATC	3 cut(s)	898, 914, 1122
BssSI	CACGAG	1 cut(s)	902
BssT1I	CCWWGG	2 cut(s)	306, 928
Bst2BI	CACGAG	1 cut(s)	902
Bst2UI	CCWGG	4 cut(s)	190, 373, 506, 1214
Bst4CI	ACNGT	2 cut(s)	23, 383
Bst6I	CTCTTC	1 cut(s)	414
BstAPI	GCANNNNNTGC	1 cut(s)	1157
BstC8I	GCNNGC	2 cut(s)	675, 726
BstDEI	CTNAG	6 cut(s)	34, 315, 621, 634, 781, 996
BstF5I	GGATG	3 cut(s)	520, 871, 1060
BstFNI	CGCG	1 cut(s)	122
BstKTI	GATC	3 cut(s)	901, 917, 1125
BstMAI	GTCTC	5 cut(s)	46, 290, 620, 863, 945
BstMBI	GATC	3 cut(s)	898, 914, 1122
BstMCI	CGRYCG	1 cut(s)	382
BstMWI	GCNNNNNNNGC	8 cut(s)	86, 478, 581, 761, 932, 1046, 1105, 1157
BstNI	CCWGG	4 cut(s)	190, 373, 506, 1214
BstNSI	RCATGY	2 cut(s)	732, 808
BstSCI	CCNGG	4 cut(s)	188, 371, 504, 1212
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	3 cut(s)	657, 773, 987
BstV2I	GAAGAC	1 cut(s)	1092
BstX2I	RGATCY	1 cut(s)	914
BstXI	CCANNNNNNTGG	3 cut(s)	208, 260, 935
BstYI	RGATCY	1 cut(s)	914
BsuRI	GGCC	2 cut(s)	615, 1049
BtsCI	GGATG	3 cut(s)	520, 871, 1060
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	75
BveI	ACCTGC	1 cut(s)	124
Cac8I	GCNNGC	2 cut(s)	675, 726
CaiI	CAGNNNCTG	1 cut(s)	848
Cfr10I	RCCGGY	1 cut(s)	755
Cfr13I	GGNCC	1 cut(s)	1048
CseI	GACGC	2 cut(s)	98, 845
CsiI	ACCWGGT	1 cut(s)	371
Csp6I	GTAC	3 cut(s)	127, 178, 325
CviAII	CATG	8 cut(s)	478, 729, 805, 949, 1045, 1052, 1082, 1109
CviQI	GTAC	3 cut(s)	127, 178, 325
DdeI	CTNAG	6 cut(s)	34, 315, 621, 634, 781, 996
DpnI	GATC	3 cut(s)	900, 916, 1124
DpnII	GATC	3 cut(s)	898, 914, 1122
EaeI	YGGCCR	1 cut(s)	613
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
EciI	GGCGGA	1 cut(s)	913
Ecl136II	GAGCTC	1 cut(s)	589
Eco130I	CCWWGG	2 cut(s)	306, 928
Eco24I	GRGCYC	2 cut(s)	474, 591
Eco31I	GGTCTC	1 cut(s)	945
Eco53kI	GAGCTC	1 cut(s)	589
EcoICRI	GAGCTC	1 cut(s)	589
EcoRII	CCWGG	4 cut(s)	188, 371, 504, 1212
EcoT14I	CCWWGG	2 cut(s)	306, 928
EcoT38I	GRGCYC	2 cut(s)	474, 591
ErhI	CCWWGG	2 cut(s)	306, 928
Esp3I	CGTCTC	1 cut(s)	46
FaeI	CATG	8 cut(s)	481, 732, 808, 952, 1048, 1055, 1085, 1112
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	2 cut(s)	57, 1128
FatI	CATG	8 cut(s)	477, 728, 804, 948, 1044, 1051, 1081, 1108
FauI	CCCGC	1 cut(s)	115
FbaI	TGATCA	2 cut(s)	898, 1122
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	3 cut(s)	671, 762, 1001
FokI	GGATG	3 cut(s)	527, 878, 1047
FriOI	GRGCYC	2 cut(s)	474, 591
Fsp4HI	GCNGC	3 cut(s)	671, 762, 1001
FspBI	CTAG	2 cut(s)	749, 1237
GluI	GCNGC	3 cut(s)	671, 762, 1001
GsaI	CCCAGC	1 cut(s)	939
GsuI	CTGGAG	1 cut(s)	927
HaeIII	GGCC	2 cut(s)	615, 1049
HapII	CCGG	3 cut(s)	240, 460, 756
HgaI	GACGC	2 cut(s)	98, 845
Hin1II	CATG	8 cut(s)	481, 732, 808, 952, 1048, 1055, 1085, 1112
HincII	GTYRAC	2 cut(s)	94, 640
HindII	GTYRAC	2 cut(s)	94, 640
HindIII	AAGCTT	2 cut(s)	683, 1024
HinfI	GANTC	8 cut(s)	14, 249, 339, 484, 547, 920, 992, 1195
HpaI	GTTAAC	1 cut(s)	640
HpaII	CCGG	3 cut(s)	240, 460, 756
HphI	GGTGA	5 cut(s)	178, 418, 494, 542, 547
Hpy166II	GTNNAC	3 cut(s)	94, 640, 695
Hpy188I	TCNGA	2 cut(s)	46, 919
Hpy188III	TCNNGA	5 cut(s)	460, 783, 848, 902, 966
Hpy8I	GTNNAC	3 cut(s)	94, 640, 695
Hpy99I	CGWCG	2 cut(s)	95, 98
HpyAV	CCTTC	4 cut(s)	396, 563, 780, 1214
HpyCH4III	ACNGT	2 cut(s)	23, 383
HpyCH4IV	ACGT	1 cut(s)	1144
HpyF10VI	GCNNNNNNNGC	8 cut(s)	86, 478, 581, 761, 932, 1046, 1105, 1157
HpyF3I	CTNAG	6 cut(s)	34, 315, 621, 634, 781, 996
HpySE526I	ACGT	1 cut(s)	1144
Hsp92II	CATG	8 cut(s)	481, 732, 808, 952, 1048, 1055, 1085, 1112
Kpn2I	TCCGGA	1 cut(s)	459
Ksp22I	TGATCA	2 cut(s)	898, 1122
KspAI	GTTAAC	1 cut(s)	640
Kzo9I	GATC	3 cut(s)	898, 914, 1122
LmnI	GCTCC	2 cut(s)	469, 850
Lsp1109I	GCAGC	3 cut(s)	657, 773, 987
LweI	GCATC	1 cut(s)	1069
MabI	ACCWGGT	1 cut(s)	371
MaeI	CTAG	2 cut(s)	749, 1237
MaeII	ACGT	1 cut(s)	1144
MaeIII	GTNAC	4 cut(s)	383, 548, 663, 1162
MalI	GATC	3 cut(s)	900, 916, 1124
MboI	GATC	3 cut(s)	898, 914, 1122
MboII	GAAGA	4 cut(s)	115, 431, 548, 1097
MflI	RGATCY	1 cut(s)	914
MhlI	GDGCHC	3 cut(s)	268, 474, 591
MlsI	TGGCCA	1 cut(s)	615
MluCI	AATT	8 cut(s)	158, 230, 290, 498, 719, 770, 969, 1066
MluNI	TGGCCA	1 cut(s)	615
MlyI	GAGTC	3 cut(s)	348, 556, 914
MmeI	TCCRAC	1 cut(s)	892
Mox20I	TGGCCA	1 cut(s)	615
MroI	TCCGGA	1 cut(s)	459
MscI	TGGCCA	1 cut(s)	615
MseI	TTAA	3 cut(s)	531, 639, 1172
MslI	CAYNNNNRTG	2 cut(s)	206, 708
Msp20I	TGGCCA	1 cut(s)	615
MspA1I	CMGCKG	1 cut(s)	670
MspI	CCGG	3 cut(s)	240, 460, 756
MspR9I	CCNGG	4 cut(s)	190, 373, 506, 1214
Mva1269I	GAATGC	1 cut(s)	544
MvaI	CCWGG	4 cut(s)	190, 373, 506, 1214
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	8 cut(s)	86, 478, 581, 761, 932, 1046, 1105, 1157
NdeII	GATC	3 cut(s)	898, 914, 1122
NlaIII	CATG	8 cut(s)	481, 732, 808, 952, 1048, 1055, 1085, 1112
NlaIV	GGNNCC	1 cut(s)	471
NmuCI	GTSAC	3 cut(s)	383, 548, 1162
NspI	RCATGY	2 cut(s)	732, 808
OliI	CACNNNNGTG	1 cut(s)	206
PcsI	WCGNNNNNNNCGW	2 cut(s)	93, 126
PctI	GAATGC	1 cut(s)	544
PfeI	GAWTC	5 cut(s)	14, 249, 484, 992, 1195
PkrI	GCNGC	3 cut(s)	672, 763, 1002
PleI	GAGTC	3 cut(s)	347, 555, 914
PpsI	GAGTC	3 cut(s)	347, 555, 914
Psp124BI	GAGCTC	1 cut(s)	591
Psp1406I	AACGTT	1 cut(s)	1144
Psp6I	CCWGG	4 cut(s)	188, 371, 504, 1212
PspFI	CCCAGC	1 cut(s)	935
PspGI	CCWGG	4 cut(s)	188, 371, 504, 1212
PspN4I	GGNNCC	1 cut(s)	471
PspPI	GGNCC	1 cut(s)	1048
PstNI	CAGNNNCTG	1 cut(s)	848
PsuI	RGATCY	1 cut(s)	914
PvuII	CAGCTG	1 cut(s)	670
RsaI	GTAC	3 cut(s)	128, 179, 326
RsaNI	GTAC	3 cut(s)	127, 178, 325
RseI	CAYNNNNRTG	2 cut(s)	206, 708
SacI	GAGCTC	1 cut(s)	591
SalI	GTCGAC	1 cut(s)	92
SaqAI	TTAA	3 cut(s)	531, 639, 1172
SatI	GCNGC	3 cut(s)	671, 762, 1001
Sau3AI	GATC	3 cut(s)	898, 914, 1122
Sau96I	GGNCC	1 cut(s)	1048
ScaI	AGTACT	1 cut(s)	179
SchI	GAGTC	3 cut(s)	348, 556, 914
ScrFI	CCNGG	4 cut(s)	190, 373, 506, 1214
SduI	GDGCHC	3 cut(s)	268, 474, 591
SexAI	ACCWGGT	1 cut(s)	371
SfaNI	GCATC	1 cut(s)	1069
SgrDI	CGTCGACG	1 cut(s)	92
SmiMI	CAYNNNNRTG	2 cut(s)	206, 708
SmlI	CTYRAG	2 cut(s)	860, 1004
SmoI	CTYRAG	2 cut(s)	860, 1004
Sse9I	AATT	8 cut(s)	158, 230, 290, 498, 719, 770, 969, 1066
SsiI	CCGC	3 cut(s)	122, 481, 924
SspI	AATATT	1 cut(s)	1176
SspMI	CTAG	2 cut(s)	749, 1237
SstI	GAGCTC	1 cut(s)	591
StyD4I	CCNGG	4 cut(s)	188, 371, 504, 1212
StyI	CCWWGG	2 cut(s)	306, 928
TaaI	ACNGT	2 cut(s)	23, 383
TaiI	ACGT	1 cut(s)	1147
TaqI	TCGA	2 cut(s)	93, 378
TasI	AATT	8 cut(s)	158, 230, 290, 498, 719, 770, 969, 1066
TatI	WGTACW	1 cut(s)	177
TfiI	GAWTC	5 cut(s)	14, 249, 484, 992, 1195
Tru1I	TTAA	3 cut(s)	531, 639, 1172
Tru9I	TTAA	3 cut(s)	531, 639, 1172
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	3 cut(s)	383, 548, 1162
TseI	GCWGC	3 cut(s)	670, 761, 1000
Tsp45I	GTSAC	3 cut(s)	383, 548, 1162
TspDTI	ATGAA	1 cut(s)	1098
TspGWI	ACGGA	1 cut(s)	366
TspRI	CASTG	1 cut(s)	82
XapI	RAATTY	2 cut(s)	230, 770
XceI	RCATGY	2 cut(s)	732, 808
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	2 cut(s)	749, 1237
ZrmI	AGTACT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.