Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0013125

Physical Location & Seq

Genomic Coordinates Reverse (-)

13815763 .. 13819547

Gene Structure 3785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G153700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGGCAAAGCAAGAACCGAACTGTGAAGGAAGCTCAGTCGTCTCTGATCTCATCAACTTCCTCAACGCTTCTCCCACTGCTTTCCACGCCGTCGACGAGGCCAAGAAGCGCCTGCAAAACGCAGGGTACGAGCCAGTTTCAGAAAGAGAAGATTGGAAATTGGAAGCTGGTAAAAAGTATTTCTTCACCAGGAACTACTCCACCATTGTCGCTTTCGCAATCGGTAAAAAATATGTTGCTGGAAACGGATTCCATATAGTTGGTGCTCATACTGATAGTCCTTGTCTCAAATTGAAACCCGTCTCCAAGGTAGTTAAAGGTGGGTACTTGGAAGTGGGTGTCCAAACCTATGGAGGTGGCTTGTGGCATACATGGTTTGACCGTGACTTGACGATTGCAGGAAGGGTGATAGTAAGAGAAGAAAAAGATGGCTCTGTTTCTTATTCACATAAACTTGTCAGAATTGAGGAGCCCATAATGCGGATCCCTACTCTGGCAATTCACTTAGACAGGGATGTCAGAGACGCATTTAAGGTGAATACGCAGAGTCATCTTCTTCCTGTCTTGGCAACATCAATCAAGGCAGAGCTCAATAAAGTGGTTGCTGAAAATGGTCAGGCCGATAGCGATGCTCAGACTCATGGAAAGAAATCTAATGAGAGAAACACCTCAAATAACTCAAAGCATCACTCACTTCTACTACAGCTGCTTGCAGATCAGCTTGGATGTGAACCAGAACATATAAGTGATTTTGAATTGCAAGCATGTGATACTCAACCAAGCGTAGTGGCTGGTGCCACAAAAGAATTTATTTTCTCAGGAAGGCTTGATAATCTCTGCATGTCATTTTGTTCTCTAAAGGCATTGATAGAATCTTCTGAAAGCAACCTGGAAGATGAGACTGGTGTTAGATTGGTGGCTTTGTTTGATCATGAGGAGGTTGGATCTGATTCCGCCCAGGGGGCTGGATCTCCAGCCATGTTAAATACTCTTTCACGGATTACAAACTCCTTTACCGCAGATTCGAAGCTGCTTGAGAAAGCAATCCAGAGGAGCTTTCTTGTGTCTGCTGACATGGCGCATGCCTTACATCCTAATTACATGGACAAACATGAAGACAATCATCAGCCCAAGTTGCACGGGGGACTTGTGATCAAACACAATGCAAATCAACGCTATGCAACCAATGCTGTGACTTCCTTAATATTCAGGGAGATAGCAAGGAATCATAACCTGCCAGTCCAGGATTTTGCGGTTCGTAATGACATGGCATGTGGTTCAACCATCGGTCCCATTCTTGCAAGTGGAGTGGGAATACGTACAGTTGATGTAGGAGCACCGCAGCTGTCAATGCACAGCATACGAGAAATGTGTGCTGTTGATGATGTGCAGTATTCATATGAGCATTTCAAAGCCTTTTTCCAGGAGTTCTCTCATCTGGATGAAAAGATTAAAGTGGATGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009987 GO:0016787 GO:0019538 GO:0034641 GO:0042802 GO:0043170 GO:0043603 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070006 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M18

Protein Analysis

489

Amino Acids

53.85

Weight (kDa)

6.06

Isoelectric Point (pI)

34.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60160
fragaria_vesca	FvH4_5g07860 FvH4_5g07860 FvH4_5g07860
malus_domestica	MD06G1145400.v1.1 MD14G1160100.v1.1
prunus_persica	Prupe.5G153700_v2.0.a1
pyrus_communis	pycom06g13470 pycom14g13360
rosa_chinensis	RchiOBHm_Chr7g0190601
rosa_laevigata	RLG00000004511
rosa_roxburghii	Rroxscaffold_3G00264470
rosa_rugosa	Rorug06G0505600
rosa_samantha	Rh7AG112200 Rh7BG115000 Rh7CG117100 Rh7DG116200
rosa_wichuraiana	Rw7G009790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	515
Acc36I	ACCTGC	1 cut(s)	1242
AccB1I	GGYRCC	1 cut(s)	794
AccI	GTMKAC	1 cut(s)	93
AciI	CCGC	5 cut(s)	481, 954, 1017, 1253, 1340
AclWI	GGATC	4 cut(s)	478, 491, 952, 976
AcsI	RAATTY	1 cut(s)	806
AfaI	GTAC	3 cut(s)	128, 326, 1321
AfiI	CCNNNNNNNGG	3 cut(s)	480, 493, 960
AgsI	TTSAA	4 cut(s)	295, 755, 1281, 1411
AjnI	CCWGG	5 cut(s)	188, 888, 957, 1242, 1422
AluBI	AGCT	8 cut(s)	33, 167, 589, 706, 721, 1030, 1056, 1345
AluI	AGCT	8 cut(s)	33, 167, 589, 706, 721, 1030, 1056, 1345
Alw21I	GWGCWC	3 cut(s)	268, 591, 1339
Alw26I	GTCTC	5 cut(s)	46, 290, 307, 516, 893
AlwI	GGATC	4 cut(s)	478, 491, 952, 976
AoxI	GGCC	2 cut(s)	99, 618
ApeKI	GCWGC	3 cut(s)	706, 1030, 1342
ApoI	RAATTY	1 cut(s)	806
AspLEI	GCGC	2 cut(s)	111, 1081
AspS9I	GGNCC	1 cut(s)	1289
AsuHPI	GGTGA	3 cut(s)	178, 418, 547
AsuII	TTCGAA	1 cut(s)	1025
AvaII	GGWCC	1 cut(s)	1289
BamHI	GGATCC	1 cut(s)	483
BanI	GGYRCC	1 cut(s)	794
BanII	GRGCYC	2 cut(s)	474, 591
BbsI	GAAGAC	1 cut(s)	1122
Bbv12I	GWGCWC	3 cut(s)	268, 591, 1339
BbvI	GCAGC	3 cut(s)	693, 1017, 1354
BccI	CCATC	2 cut(s)	422, 1292
BceAI	ACGGC	1 cut(s)	74
BcgI	CGANNNNNNTGC	2 cut(s)	611, 645
BciT130I	CCWGG	5 cut(s)	190, 890, 959, 1244, 1424
BclI	TGATCA	2 cut(s)	928, 1152
BcoDI	GTCTC	5 cut(s)	46, 290, 307, 516, 893
BfmI	CTRYAG	1 cut(s)	701
BfoI	RGCGCY	1 cut(s)	112
BfuAI	ACCTGC	1 cut(s)	1242
BglI	GCCNNNNNGGC	1 cut(s)	962
BisI	GCNGC	3 cut(s)	707, 1031, 1343
BlsI	GCNGC	3 cut(s)	708, 1032, 1344
Bme1390I	CCNGG	5 cut(s)	190, 890, 959, 1244, 1424
Bme18I	GGWCC	1 cut(s)	1289
BmgT120I	GGNCC	1 cut(s)	1289
BmiI	GGNNCC	4 cut(s)	471, 485, 796, 1291
BmrFI	CCNGG	5 cut(s)	190, 890, 959, 1244, 1424
BmsI	GCATC	3 cut(s)	619, 694, 1450
BpiI	GAAGAC	1 cut(s)	1122
BpmI	CTGGAG	1 cut(s)	957
Bpu14I	TTCGAA	1 cut(s)	1025
BpuEI	CTTGAG	1 cut(s)	1055
BsaAI	YACGTR	1 cut(s)	1319
BsaJI	CCNNGG	3 cut(s)	306, 957, 958
Bsc4I	CCNNNNNNNGG	3 cut(s)	480, 493, 960
Bse1I	ACTGG	3 cut(s)	134, 907, 1238
BseBI	CCWGG	5 cut(s)	190, 890, 959, 1244, 1424
BseDI	CCNNGG	3 cut(s)	306, 957, 958
BseGI	GGATG	5 cut(s)	520, 731, 1090, 1447, 1465
BseLI	CCNNNNNNNGG	3 cut(s)	480, 493, 960
BseMII	CTCAG	3 cut(s)	48, 647, 831
BseNI	ACTGG	3 cut(s)	134, 907, 1238
BseRI	GAGGAG	3 cut(s)	482, 950, 1066
BseXI	GCAGC	3 cut(s)	693, 1017, 1354
BsgI	GTGCAG	1 cut(s)	1409
BshFI	GGCC	2 cut(s)	101, 620
BshNI	GGYRCC	1 cut(s)	794
BsiHKAI	GWGCWC	3 cut(s)	268, 591, 1339
BslFI	GGGAC	2 cut(s)	1158, 1275
BslI	CCNNNNNNNGG	3 cut(s)	480, 493, 960
BsmAI	GTCTC	5 cut(s)	46, 290, 307, 516, 893
BsmBI	CGTCTC	3 cut(s)	46, 307, 516
BsmFI	GGGAC	2 cut(s)	1158, 1275
BsnI	GGCC	2 cut(s)	101, 620
Bsp119I	TTCGAA	1 cut(s)	1025
Bsp1286I	GDGCHC	4 cut(s)	268, 474, 591, 1339
Bsp143I	GATC	7 cut(s)	46, 483, 715, 928, 944, 968, 1152
BspACI	CCGC	5 cut(s)	481, 954, 1017, 1253, 1340
BspANI	GGCC	2 cut(s)	101, 620
BspCNI	CTCAG	3 cut(s)	47, 646, 830
BspHI	TCATGA	1 cut(s)	931
BspLI	GGNNCC	4 cut(s)	471, 485, 796, 1291
BspMI	ACCTGC	1 cut(s)	1242
BspPI	GGATC	4 cut(s)	478, 491, 952, 976
BspT104I	TTCGAA	1 cut(s)	1025
BspT107I	GGYRCC	1 cut(s)	794
BsrI	ACTGG	3 cut(s)	134, 907, 1238
BssECI	CCNNGG	3 cut(s)	306, 957, 958
BssMI	GATC	7 cut(s)	46, 483, 715, 928, 944, 968, 1152
BssT1I	CCWWGG	1 cut(s)	306
Bst2UI	CCWGG	5 cut(s)	190, 890, 959, 1244, 1424
Bst4CI	ACNGT	3 cut(s)	23, 383, 1324
BstAPI	GCANNNNNTGC	1 cut(s)	1187
BstBAI	YACGTR	1 cut(s)	1319
BstBI	TTCGAA	1 cut(s)	1025
BstC8I	GCNNGC	4 cut(s)	113, 711, 762, 1083
BstDEI	CTNAG	4 cut(s)	34, 505, 633, 817
BstF5I	GGATG	5 cut(s)	520, 731, 1090, 1447, 1465
BstH2I	RGCGCY	1 cut(s)	112
BstHHI	GCGC	2 cut(s)	111, 1081
BstKTI	GATC	7 cut(s)	49, 486, 718, 931, 947, 971, 1155
BstMAI	GTCTC	5 cut(s)	46, 290, 307, 516, 893
BstMBI	GATC	7 cut(s)	46, 483, 715, 928, 944, 968, 1152
BstMWI	GCNNNNNNNGC	7 cut(s)	86, 478, 962, 1076, 1135, 1187, 1351
BstNI	CCWGG	5 cut(s)	190, 890, 959, 1244, 1424
BstNSI	RCATGY	4 cut(s)	768, 844, 1085, 1275
BstSCI	CCNGG	5 cut(s)	188, 888, 957, 1242, 1422
BstSFI	CTRYAG	1 cut(s)	701
BstSNI	TACGTA	1 cut(s)	1319
BstV1I	GCAGC	3 cut(s)	693, 1017, 1354
BstV2I	GAAGAC	1 cut(s)	1122
BstX2I	RGATCY	3 cut(s)	483, 944, 968
BstXI	CCANNNNNNTGG	3 cut(s)	260, 350, 965
BstYI	RGATCY	3 cut(s)	483, 944, 968
BsuRI	GGCC	2 cut(s)	101, 620
BtgZI	GCGATG	1 cut(s)	642
BtsCI	GGATG	5 cut(s)	520, 731, 1090, 1447, 1465
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	75
BveI	ACCTGC	1 cut(s)	1242
Cac8I	GCNNGC	4 cut(s)	113, 711, 762, 1083
CciI	TCATGA	1 cut(s)	931
CfoI	GCGC	2 cut(s)	111, 1081
Cfr13I	GGNCC	1 cut(s)	1289
CseI	GACGC	1 cut(s)	533
Csp6I	GTAC	3 cut(s)	127, 325, 1320
CspCI	CAANNNNNGTGG	4 cut(s)	768, 803, 1290, 1325
CviQI	GTAC	3 cut(s)	127, 325, 1320
DdeI	CTNAG	4 cut(s)	34, 505, 633, 817
DpnI	GATC	7 cut(s)	48, 485, 717, 930, 946, 970, 1154
DpnII	GATC	7 cut(s)	46, 483, 715, 928, 944, 968, 1152
DrdI	GACNNNNNNGTC	1 cut(s)	515
DseDI	GACNNNNNNGTC	1 cut(s)	515
EciI	GGCGGA	1 cut(s)	943
Ecl136II	GAGCTC	1 cut(s)	589
Eco105I	TACGTA	1 cut(s)	1319
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	2 cut(s)	474, 591
Eco47I	GGWCC	1 cut(s)	1289
Eco53kI	GAGCTC	1 cut(s)	589
EcoICRI	GAGCTC	1 cut(s)	589
EcoRII	CCWGG	5 cut(s)	188, 888, 957, 1242, 1422
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	2 cut(s)	474, 591
ErhI	CCWWGG	1 cut(s)	306
Esp3I	CGTCTC	3 cut(s)	46, 307, 516
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	2 cut(s)	1158, 1275
FauNDI	CATATG	1 cut(s)	1399
FbaI	TGATCA	2 cut(s)	928, 1152
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	3 cut(s)	707, 1031, 1343
FokI	GGATG	4 cut(s)	527, 738, 1077, 1454
FriOI	GRGCYC	2 cut(s)	474, 591
Fsp4HI	GCNGC	3 cut(s)	707, 1031, 1343
GlaI	GCGC	2 cut(s)	110, 1080
GluI	GCNGC	3 cut(s)	707, 1031, 1343
GsuI	CTGGAG	1 cut(s)	957
HaeII	RGCGCY	1 cut(s)	112
HaeIII	GGCC	2 cut(s)	101, 620
HgaI	GACGC	1 cut(s)	533
HhaI	GCGC	2 cut(s)	111, 1081
Hin6I	GCGC	2 cut(s)	109, 1079
HinP1I	GCGC	2 cut(s)	109, 1079
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HinfI	GANTC	7 cut(s)	249, 547, 637, 872, 950, 1022, 1225
HphI	GGTGA	3 cut(s)	178, 418, 547
Hpy166II	GTNNAC	2 cut(s)	94, 731
Hpy188I	TCNGA	7 cut(s)	46, 142, 461, 521, 636, 880, 949
Hpy188III	TCNNGA	4 cut(s)	819, 932, 1048, 1439
Hpy8I	GTNNAC	2 cut(s)	94, 731
Hpy99I	CGWCG	2 cut(s)	95, 98
HpyAV	CCTTC	3 cut(s)	20, 396, 816
HpyCH4III	ACNGT	3 cut(s)	23, 383, 1324
HpyCH4IV	ACGT	1 cut(s)	1318
HpyF10VI	GCNNNNNNNGC	7 cut(s)	86, 478, 962, 1076, 1135, 1187, 1351
HpyF3I	CTNAG	4 cut(s)	34, 505, 633, 817
HpySE526I	ACGT	1 cut(s)	1318
HspAI	GCGC	2 cut(s)	109, 1079
Ksp22I	TGATCA	2 cut(s)	928, 1152
Kzo9I	GATC	7 cut(s)	46, 483, 715, 928, 944, 968, 1152
LmnI	GCTCC	3 cut(s)	469, 1053, 1334
Lsp1109I	GCAGC	3 cut(s)	693, 1017, 1354
LweI	GCATC	3 cut(s)	619, 694, 1450
MaeII	ACGT	1 cut(s)	1318
MaeIII	GTNAC	2 cut(s)	383, 1192
MalI	GATC	7 cut(s)	48, 485, 717, 930, 946, 970, 1154
MboI	GATC	7 cut(s)	46, 483, 715, 928, 944, 968, 1152
MboII	GAAGA	8 cut(s)	161, 175, 431, 545, 548, 867, 905, 1127
MflI	RGATCY	3 cut(s)	483, 944, 968
MhlI	GDGCHC	4 cut(s)	268, 474, 591, 1339
MluCI	AATT	7 cut(s)	158, 290, 462, 498, 755, 806, 1096
MlyI	GAGTC	2 cut(s)	556, 631
MmeI	TCCRAC	1 cut(s)	922
MnlI	CCTC	8 cut(s)	71, 91, 347, 460, 679, 928, 931, 1044
MseI	TTAA	5 cut(s)	315, 531, 983, 1202, 1452
MslI	CAYNNNNRTG	2 cut(s)	744, 1440
MspA1I	CMGCKG	2 cut(s)	706, 1345
MspR9I	CCNGG	5 cut(s)	190, 890, 959, 1244, 1424
MvaI	CCWGG	5 cut(s)	190, 890, 959, 1244, 1424
MwoI	GCNNNNNNNGC	7 cut(s)	86, 478, 962, 1076, 1135, 1187, 1351
NdeI	CATATG	1 cut(s)	1399
NdeII	GATC	7 cut(s)	46, 483, 715, 928, 944, 968, 1152
NlaIV	GGNNCC	4 cut(s)	471, 485, 796, 1291
NmuCI	GTSAC	2 cut(s)	383, 1192
NspI	RCATGY	4 cut(s)	768, 844, 1085, 1275
NspV	TTCGAA	1 cut(s)	1025
PaeI	GCATGC	1 cut(s)	1085
PagI	TCATGA	1 cut(s)	931
PasI	CCCWGGG	1 cut(s)	958
PcsI	WCGNNNNNNNCGW	2 cut(s)	93, 126
PfeI	GAWTC	5 cut(s)	249, 872, 950, 1022, 1225
PfoI	TCCNGGA	2 cut(s)	1242, 1422
PkrI	GCNGC	3 cut(s)	708, 1032, 1344
PleI	GAGTC	2 cut(s)	555, 631
PpsI	GAGTC	2 cut(s)	555, 631
Ppu21I	YACGTR	1 cut(s)	1319
Psp124BI	GAGCTC	1 cut(s)	591
Psp6I	CCWGG	5 cut(s)	188, 888, 957, 1242, 1422
PspGI	CCWGG	5 cut(s)	188, 888, 957, 1242, 1422
PspN4I	GGNNCC	4 cut(s)	471, 485, 796, 1291
PspPI	GGNCC	1 cut(s)	1289
PsuI	RGATCY	3 cut(s)	483, 944, 968
PvuII	CAGCTG	2 cut(s)	706, 1345
RsaI	GTAC	3 cut(s)	128, 326, 1321
RsaNI	GTAC	3 cut(s)	127, 325, 1320
RseI	CAYNNNNRTG	2 cut(s)	744, 1440
SacI	GAGCTC	1 cut(s)	591
SalI	GTCGAC	1 cut(s)	92
SaqAI	TTAA	5 cut(s)	315, 531, 983, 1202, 1452
SatI	GCNGC	3 cut(s)	707, 1031, 1343
Sau3AI	GATC	7 cut(s)	46, 483, 715, 928, 944, 968, 1152
Sau96I	GGNCC	1 cut(s)	1289
SchI	GAGTC	2 cut(s)	556, 631
ScrFI	CCNGG	5 cut(s)	190, 890, 959, 1244, 1424
SduI	GDGCHC	4 cut(s)	268, 474, 591, 1339
SfaNI	GCATC	3 cut(s)	619, 694, 1450
SfcI	CTRYAG	1 cut(s)	701
SfuI	TTCGAA	1 cut(s)	1025
SgrDI	CGTCGACG	1 cut(s)	92
SinI	GGWCC	1 cut(s)	1289
SmiMI	CAYNNNNRTG	2 cut(s)	744, 1440
SmlI	CTYRAG	1 cut(s)	1034
SmoI	CTYRAG	1 cut(s)	1034
SnaBI	TACGTA	1 cut(s)	1319
SphI	GCATGC	1 cut(s)	1085
Sse9I	AATT	7 cut(s)	158, 290, 462, 498, 755, 806, 1096
SsiI	CCGC	5 cut(s)	481, 954, 1017, 1253, 1340
SspI	AATATT	1 cut(s)	1206
SstI	GAGCTC	1 cut(s)	591
StyD4I	CCNGG	5 cut(s)	188, 888, 957, 1242, 1422
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	3 cut(s)	23, 383, 1324
TaiI	ACGT	1 cut(s)	1321
TaqI	TCGA	2 cut(s)	93, 1025
TaqII	GACCGA	1 cut(s)	1277
TasI	AATT	7 cut(s)	158, 290, 462, 498, 755, 806, 1096
TfiI	GAWTC	5 cut(s)	249, 872, 950, 1022, 1225
Tru1I	TTAA	5 cut(s)	315, 531, 983, 1202, 1452
Tru9I	TTAA	5 cut(s)	315, 531, 983, 1202, 1452
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	2 cut(s)	383, 1192
TseI	GCWGC	3 cut(s)	706, 1030, 1342
Tsp45I	GTSAC	2 cut(s)	383, 1192
TspDTI	ATGAA	3 cut(s)	1128, 1386, 1458
TspGWI	ACGGA	2 cut(s)	261, 1012
TspRI	CASTG	1 cut(s)	82
VpaK11BI	GGWCC	1 cut(s)	1289
XapI	RAATTY	1 cut(s)	806
XceI	RCATGY	4 cut(s)	768, 844, 1085, 1275
XmiI	GTMKAC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.