FvH4_5g08350

Protein SHOOT GRAVITROPISM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0014341
Physical Location & Seq
Forward (+)
4857329 .. 4858228
900 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g08350.t1

Sequence Viewer

Length: 537 bp
ATGGAACATGATGATCAAAAGGAGTTGCAGCTTCTTCCTGGTCCTCCCTCCTCACACTGGACACCCCCTCGGCCGTCAGATCCTTCCTCTCTACGATACCGATCAAAGGCAGCCGTTGAAGCCCTAGAAGCGCCCAACTCTCTGGACCTCCAACTCTCCATAAGTGTGAGACCGCTGAGGTCATCATTAGGAGGAGGAGATCGAGCAGCCAACAATGTTTCAGGGTACGAACATACGACGACGGGGTTGAAGGCGAAGGGGAGTTGCGTGGAGGCGCTGAAGTGGCAGGCGGCGGAGCAAATCCGAATGGCGGCAATGGAGAAGGCGTACGCGGAGAGAGTGAGGGAGCTGACGAGGAGGGAGATGGAGCTGGCGCAGTCGGAGTTCACACGTGCGAGACACATGTGGGAGAGGGCGAGGGAGGAGGTGGACAAGGCGGAGAGGATGAAGGAGAAGGCAATGCGGCAGATGGATTCGACGTGCATGGAGATCACTTGCCAGTCTTGCAGGCAAAGGATCGATATTACTGTTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

20.22

Weight (kDa)

7.7

Isoelectric Point (pI)

49.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48550 AT3G48550
fragaria_vesca FvH4_5g08350
malus_domestica MD06G1141500.v1.1 MD14G1156700.v1.1
prunus_persica Prupe.5G150800_v2.0.a1
pyrus_communis pycom14g13030
rosa_chinensis RchiOBHm_Chr7g0190101
rosa_laevigata RLG00000004565
rosa_multiflora Rmu_sc0004886.1_g000011
rosa_roxburghii Rroxscaffold_3G00264880
rosa_rugosa Rorug06G0502300
rosa_samantha Rh7AG107900 Rh7BG110200 Rh7CG112500 Rh7DG110900
rosa_wichuraiana Rw7G009320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 332
AciI CCGC 7 cut(s) 173, 290, 293, 311, 332, 437, 463
AclWI GGATC 2 cut(s) 74, 524
AcoI YGGCCR 1 cut(s) 71
AcuI CTGAAG 1 cut(s) 299
AcvI CACGTG 1 cut(s) 392
AfaI GTAC 2 cut(s) 227, 329
AfiI CCNNNNNNNGG 3 cut(s) 57, 106, 310
AflIII ACRYGT 2 cut(s) 389, 402
AgsI TTSAA 2 cut(s) 119, 250
AjiI CACGTC 1 cut(s) 480
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 3 cut(s) 31, 349, 370
AluI AGCT 3 cut(s) 31, 349, 370
Alw26I GTCTC 2 cut(s) 163, 391
AlwI GGATC 2 cut(s) 74, 524
AoxI GGCC 1 cut(s) 71
ApeKI GCWGC 3 cut(s) 28, 110, 206
AspLEI GCGC 3 cut(s) 133, 277, 376
AspS9I GGNCC 2 cut(s) 41, 145
AvaII GGWCC 2 cut(s) 41, 145
BbrPI CACGTG 1 cut(s) 392
BbvCI CCTCAGC 1 cut(s) 176
BbvI GCAGC 3 cut(s) 40, 122, 218
BccI CCATC 2 cut(s) 358, 463
BceAI ACGGC 2 cut(s) 58, 98
BciT130I CCWGG 1 cut(s) 39
BclI TGATCA 1 cut(s) 13
BcoDI GTCTC 2 cut(s) 163, 391
BfaI CTAG 1 cut(s) 125
BfoI RGCGCY 2 cut(s) 134, 278
BisI GCNGC 6 cut(s) 29, 111, 207, 291, 312, 464
BlsI GCNGC 6 cut(s) 30, 112, 208, 292, 313, 465
Bme1390I CCNGG 1 cut(s) 39
Bme18I GGWCC 2 cut(s) 41, 145
BmgBI CACGTC 1 cut(s) 480
BmgT120I GGNCC 2 cut(s) 41, 145
BmrFI CCNGG 1 cut(s) 39
Bpu10I CCTNAGC 1 cut(s) 176
Bsa29I ATCGAT 1 cut(s) 519
BsaAI YACGTR 1 cut(s) 392
BsaBI GATNNNNATC 1 cut(s) 100
BsaI GGTCTC 1 cut(s) 163
BsaJI CCNNGG 1 cut(s) 68
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 3 cut(s) 57, 106, 310
Bse1I ACTGG 2 cut(s) 62, 499
Bse3DI GCAATG 2 cut(s) 321, 465
Bse8I GATNNNNATC 1 cut(s) 100
BseBI CCWGG 1 cut(s) 39
BseCI ATCGAT 1 cut(s) 519
BseDI CCNNGG 1 cut(s) 68
BseGI GGATG 1 cut(s) 450
BseJI GATNNNNATC 1 cut(s) 100
BseLI CCNNNNNNNGG 3 cut(s) 57, 106, 310
BseMI GCAATG 2 cut(s) 321, 465
BseMII CTCAG 1 cut(s) 167
BseNI ACTGG 2 cut(s) 62, 499
BseRI GAGGAG 5 cut(s) 40, 207, 210, 370, 437
BseX3I CGGCCG 1 cut(s) 71
BseXI GCAGC 3 cut(s) 40, 122, 218
Bsh1236I CGCG 1 cut(s) 332
Bsh1285I CGRYCG 1 cut(s) 74
BshFI GGCC 1 cut(s) 73
BshVI ATCGAT 1 cut(s) 519
BsiEI CGRYCG 1 cut(s) 74
BsiWI CGTACG 1 cut(s) 327
BslI CCNNNNNNNGG 3 cut(s) 57, 106, 310
BsmAI GTCTC 2 cut(s) 163, 391
BsnI GGCC 1 cut(s) 73
Bso31I GGTCTC 1 cut(s) 163
Bsp143I GATC 6 cut(s) 13, 79, 101, 199, 489, 516
BspACI CCGC 7 cut(s) 173, 290, 293, 311, 332, 437, 463
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 168
BspDI ATCGAT 1 cut(s) 519
BspFNI CGCG 1 cut(s) 332
BspPI GGATC 2 cut(s) 74, 524
BspTNI GGTCTC 1 cut(s) 163
BsrDI GCAATG 2 cut(s) 321, 465
BsrI ACTGG 2 cut(s) 62, 499
BssECI CCNNGG 1 cut(s) 68
BssMI GATC 6 cut(s) 13, 79, 101, 199, 489, 516
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 529
BstBAI YACGTR 1 cut(s) 392
BstC8I GCNNGC 3 cut(s) 288, 372, 509
BstDEI CTNAG 1 cut(s) 176
BstF5I GGATG 1 cut(s) 450
BstFNI CGCG 1 cut(s) 332
BstH2I RGCGCY 2 cut(s) 134, 278
BstHHI GCGC 3 cut(s) 133, 277, 376
BstKTI GATC 6 cut(s) 16, 82, 104, 202, 492, 519
BstMAI GTCTC 2 cut(s) 163, 391
BstMBI GATC 6 cut(s) 13, 79, 101, 199, 489, 516
BstMCI CGRYCG 1 cut(s) 74
BstMWI GCNNNNNNNGC 4 cut(s) 119, 128, 283, 504
BstNI CCWGG 1 cut(s) 39
BstNSI RCATGY 1 cut(s) 406
BstSCI CCNGG 1 cut(s) 37
BstUI CGCG 1 cut(s) 332
BstV1I GCAGC 3 cut(s) 40, 122, 218
BstX2I RGATCY 1 cut(s) 79
BstXI CCANNNNNNTGG 1 cut(s) 142
BstYI RGATCY 1 cut(s) 79
BstZI CGGCCG 1 cut(s) 71
Bsu15I ATCGAT 1 cut(s) 519
BsuRI GGCC 1 cut(s) 73
BsuTUI ATCGAT 1 cut(s) 519
BtrI CACGTC 1 cut(s) 480
BtsCI GGATG 1 cut(s) 450
BtsIMutI CAGTG 1 cut(s) 55
Cac8I GCNNGC 3 cut(s) 288, 372, 509
CfoI GCGC 3 cut(s) 133, 277, 376
Cfr13I GGNCC 2 cut(s) 41, 145
ClaI ATCGAT 1 cut(s) 519
Csp6I GTAC 2 cut(s) 226, 328
CviAII CATG 3 cut(s) 8, 403, 484
CviJI RGCY 7 cut(s) 31, 73, 113, 122, 209, 349, 370
CviKI_1 RGCY 7 cut(s) 31, 73, 113, 122, 209, 349, 370
CviQI GTAC 2 cut(s) 226, 328
DdeI CTNAG 1 cut(s) 176
DpnI GATC 6 cut(s) 15, 81, 103, 201, 491, 518
DpnII GATC 6 cut(s) 13, 79, 101, 199, 489, 516
EaeI YGGCCR 1 cut(s) 71
EagI CGGCCG 1 cut(s) 71
EciI GGCGGA 2 cut(s) 308, 452
EclXI CGGCCG 1 cut(s) 71
Eco31I GGTCTC 1 cut(s) 163
Eco47I GGWCC 2 cut(s) 41, 145
Eco52I CGGCCG 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 299
Eco72I CACGTG 1 cut(s) 392
EcoRII CCWGG 1 cut(s) 37
FaeI CATG 3 cut(s) 11, 406, 487
FaiI YATR 6 cut(s) 9, 161, 234, 404, 485, 535
FatI CATG 3 cut(s) 7, 402, 483
FbaI TGATCA 1 cut(s) 13
Fnu4HI GCNGC 6 cut(s) 29, 111, 207, 291, 312, 464
FokI GGATG 1 cut(s) 457
Fsp4HI GCNGC 6 cut(s) 29, 111, 207, 291, 312, 464
FspBI CTAG 1 cut(s) 125
GlaI GCGC 3 cut(s) 132, 276, 375
GluI GCNGC 6 cut(s) 29, 111, 207, 291, 312, 464
HaeII RGCGCY 2 cut(s) 134, 278
HaeIII GGCC 1 cut(s) 73
HhaI GCGC 3 cut(s) 133, 277, 376
Hin1II CATG 3 cut(s) 11, 406, 487
Hin6I GCGC 3 cut(s) 131, 275, 374
HinP1I GCGC 3 cut(s) 131, 275, 374
HinfI GANTC 1 cut(s) 473
Hpy166II GTNNAC 2 cut(s) 387, 430
Hpy188I TCNGA 3 cut(s) 79, 305, 382
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 2 cut(s) 387, 430
Hpy99I CGWCG 3 cut(s) 241, 244, 481
HpyAV CCTTC 6 cut(s) 93, 244, 250, 316, 442, 448
HpyCH4III ACNGT 1 cut(s) 529
HpyCH4IV ACGT 2 cut(s) 391, 479
HpyCH4V TGCA 3 cut(s) 28, 483, 507
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 128, 283, 504
HpyF3I CTNAG 1 cut(s) 176
HpySE526I ACGT 2 cut(s) 391, 479
Hsp92II CATG 3 cut(s) 11, 406, 487
HspAI GCGC 3 cut(s) 131, 275, 374
Ksp22I TGATCA 1 cut(s) 13
Kzo9I GATC 6 cut(s) 13, 79, 101, 199, 489, 516
LmnI GCTCC 3 cut(s) 295, 346, 367
LpnPI CCDG 9 cut(s) 24, 43, 51, 128, 207, 272, 356, 493, 512
Lsp1109I GCAGC 3 cut(s) 40, 122, 218
MaeI CTAG 1 cut(s) 125
MaeII ACGT 2 cut(s) 391, 479
MaeIII GTNAC 1 cut(s) 529
MalI GATC 6 cut(s) 15, 81, 103, 201, 491, 518
MboI GATC 6 cut(s) 13, 79, 101, 199, 489, 516
MboII GAAGA 1 cut(s) 26
MflI RGATCY 1 cut(s) 79
MmeI TCCRAC 2 cut(s) 175, 360
MslI CAYNNNNRTG 1 cut(s) 164
MspA1I CMGCKG 1 cut(s) 175
MspR9I CCNGG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 39
MvnI CGCG 1 cut(s) 332
MwoI GCNNNNNNNGC 4 cut(s) 119, 128, 283, 504
NdeII GATC 6 cut(s) 13, 79, 101, 199, 489, 516
NlaIII CATG 3 cut(s) 11, 406, 487
NmeAIII GCCGAG 1 cut(s) 49
NspI RCATGY 1 cut(s) 406
PciI ACATGT 1 cut(s) 402
PfeI GAWTC 1 cut(s) 473
Pfl23II CGTACG 1 cut(s) 327
PkrI GCNGC 6 cut(s) 30, 112, 208, 292, 313, 465
PmaCI CACGTG 1 cut(s) 392
PmlI CACGTG 1 cut(s) 392
Ppu21I YACGTR 1 cut(s) 392
PscI ACATGT 1 cut(s) 402
Psp6I CCWGG 1 cut(s) 37
PspCI CACGTG 1 cut(s) 392
PspGI CCWGG 1 cut(s) 37
PspLI CGTACG 1 cut(s) 327
PspPI GGNCC 2 cut(s) 41, 145
PsuI RGATCY 1 cut(s) 79
RsaI GTAC 2 cut(s) 227, 329
RsaNI GTAC 2 cut(s) 226, 328
RseI CAYNNNNRTG 1 cut(s) 164
SatI GCNGC 6 cut(s) 29, 111, 207, 291, 312, 464
Sau3AI GATC 6 cut(s) 13, 79, 101, 199, 489, 516
Sau96I GGNCC 2 cut(s) 41, 145
ScrFI CCNGG 1 cut(s) 39
SetI ASST 8 cut(s) 33, 150, 182, 351, 372, 394, 429, 482
SinI GGWCC 2 cut(s) 41, 145
SmiMI CAYNNNNRTG 1 cut(s) 164
SsiI CCGC 7 cut(s) 173, 290, 293, 311, 332, 437, 463
SspMI CTAG 1 cut(s) 125
StyD4I CCNGG 1 cut(s) 37
TaaI ACNGT 1 cut(s) 529
TaiI ACGT 2 cut(s) 394, 482
TaqI TCGA 3 cut(s) 202, 476, 519
TauI GCSGC 3 cut(s) 293, 314, 466
TfiI GAWTC 1 cut(s) 473
TscAI CASTG 1 cut(s) 62
TseI GCWGC 3 cut(s) 28, 110, 206
TspDTI ATGAA 1 cut(s) 461
TspRI CASTG 1 cut(s) 62
VpaK11BI GGWCC 2 cut(s) 41, 145
XceI RCATGY 1 cut(s) 406
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.