Prupe.5G150800_v2.0.a1

Protein SHOOT GRAVITROPISM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0014341
Physical Location & Seq
Reverse (-)
13670896 .. 13672491
1596 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G150800.1

Sequence Viewer

Length: 546 bp
ATGGGACCAGTGATCGGACGGTCCAAGTGGCAGGGTCAGAGAGCCAATCATGGTCAGCCCCACACTTTCACTTGGAGGACATCTCGACCGTCGGATTCATCGATAAGGTATCACCGGTCATCGAAGGCAGCGGTGCAGGATGCATTATTGGAAGGGCCTAATTCCCTTGACCTGCAACTGTCAATCAGTGTGAGGCCAATAAGGGCAGCTTCTTCCTCAGATCATTGTGTTGTGTCAAAACCAGTCTGTGATTTTGATGTCTTGAAGCCCAAGACAGCTGGTTGTGTGGAGGCCTTGAAATGGCAAGCAGCTGAGCAAATCAGATTGGCTGCAATGGAAAAGGCCTATGCAGAGAGAGTGAGGGAGCTGACAAGGAGAGAGATGGAATTGGCTCAGTCAGAGTTCACACGTGCAAGGCACATGTGGGAGAGGGCTAGAGAAGAAGTGGAGAAAGCTGAGAGAATGAAGGAGAAGGCAATGCTTCAGATGGACTCTACGTGCATGGAGATCACTTGCCAATCTTGCAGACAAAGGTTTAGGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

20.78

Weight (kDa)

9.43

Isoelectric Point (pI)

51.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48550 AT3G48550
fragaria_vesca FvH4_5g08350
malus_domestica MD06G1141500.v1.1 MD14G1156700.v1.1
prunus_persica Prupe.5G150800_v2.0.a1
pyrus_communis pycom14g13030
rosa_chinensis RchiOBHm_Chr7g0190101
rosa_laevigata RLG00000004565
rosa_multiflora Rmu_sc0004886.1_g000011
rosa_roxburghii Rroxscaffold_3G00264880
rosa_rugosa Rorug06G0502300
rosa_samantha Rh7AG107900 Rh7BG110200 Rh7CG112500 Rh7DG110900
rosa_wichuraiana Rw7G009320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 180
AciI CCGC 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 467
AcvI CACGTG 1 cut(s) 410
AfiI CCNNNNNNNGG 2 cut(s) 14, 300
AflIII ACRYGT 2 cut(s) 407, 420
AgeI ACCGGT 1 cut(s) 114
AgsI TTSAA 2 cut(s) 265, 298
AluBI AGCT 5 cut(s) 209, 278, 311, 367, 455
AluI AGCT 5 cut(s) 209, 278, 311, 367, 455
AoxI GGCC 5 cut(s) 155, 194, 291, 342, 539
ApeKI GCWGC 4 cut(s) 128, 206, 308, 329
AsiGI ACCGGT 1 cut(s) 114
AspS9I GGNCC 3 cut(s) 5, 21, 155
AsuHPI GGTGA 1 cut(s) 104
AvaII GGWCC 2 cut(s) 5, 21
BbrPI CACGTG 1 cut(s) 410
BbvI GCAGC 4 cut(s) 140, 218, 316, 320
BccI CCATC 2 cut(s) 376, 481
BfaI CTAG 1 cut(s) 435
BfuAI ACCTGC 1 cut(s) 180
BisI GCNGC 4 cut(s) 129, 207, 309, 330
BlpI GCTNAGC 1 cut(s) 312
BlsI GCNGC 4 cut(s) 130, 208, 310, 331
Bme18I GGWCC 2 cut(s) 5, 21
BmgT120I GGNCC 3 cut(s) 5, 21, 155
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 130
BplI GAGNNNNNCTC 2 cut(s) 67, 99
Bpu1102I GCTNAGC 1 cut(s) 312
Bsa29I ATCGAT 1 cut(s) 101
BsaAI YACGTR 2 cut(s) 410, 498
BsaWI WCCGGW 1 cut(s) 114
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 300
Bse118I RCCGGY 1 cut(s) 114
Bse1I ACTGG 2 cut(s) 8, 242
Bse3DI GCAATG 2 cut(s) 339, 483
BseCI ATCGAT 1 cut(s) 101
BseGI GGATG 1 cut(s) 145
BseLI CCNNNNNNNGG 2 cut(s) 14, 300
BseMI GCAATG 2 cut(s) 339, 483
BseMII CTCAG 4 cut(s) 231, 303, 407, 447
BseNI ACTGG 2 cut(s) 8, 242
BseXI GCAGC 4 cut(s) 140, 218, 316, 320
BsgI GTGCAG 1 cut(s) 155
Bsh1285I CGRYCG 1 cut(s) 89
BshFI GGCC 5 cut(s) 157, 196, 293, 344, 541
BshTI ACCGGT 1 cut(s) 114
BshVI ATCGAT 1 cut(s) 101
BsiEI CGRYCG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 115
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 2 cut(s) 14, 300
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 5 cut(s) 157, 196, 293, 344, 541
Bsp143I GATC 3 cut(s) 12, 220, 507
Bsp1720I GCTNAGC 1 cut(s) 312
BspACI CCGC 1 cut(s) 131
BspANI GGCC 5 cut(s) 157, 196, 293, 344, 541
BspCNI CTCAG 4 cut(s) 230, 304, 406, 448
BspDI ATCGAT 1 cut(s) 101
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 180
BsrDI GCAATG 2 cut(s) 339, 483
BsrFI RCCGGY 1 cut(s) 114
BsrI ACTGG 2 cut(s) 8, 242
BssAI RCCGGY 1 cut(s) 114
BssMI GATC 3 cut(s) 12, 220, 507
Bst4CI ACNGT 3 cut(s) 21, 90, 180
BstBAI YACGTR 2 cut(s) 410, 498
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 4 cut(s) 217, 312, 393, 456
BstF5I GGATG 1 cut(s) 145
BstKTI GATC 3 cut(s) 15, 223, 510
BstMBI GATC 3 cut(s) 12, 220, 507
BstMCI CGRYCG 1 cut(s) 89
BstMWI GCNNNNNNNGC 1 cut(s) 522
BstNSI RCATGY 1 cut(s) 424
BstV1I GCAGC 4 cut(s) 140, 218, 316, 320
Bsu15I ATCGAT 1 cut(s) 101
BsuRI GGCC 5 cut(s) 157, 196, 293, 344, 541
BsuTUI ATCGAT 1 cut(s) 101
BtsCI GGATG 1 cut(s) 145
BtsIMutI CAGTG 2 cut(s) 15, 193
BveI ACCTGC 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 306
Cfr10I RCCGGY 1 cut(s) 114
Cfr13I GGNCC 3 cut(s) 5, 21, 155
ClaI ATCGAT 1 cut(s) 101
CspAI ACCGGT 1 cut(s) 114
CviAII CATG 3 cut(s) 50, 421, 502
DdeI CTNAG 4 cut(s) 217, 312, 393, 456
DpnI GATC 3 cut(s) 14, 222, 509
DpnII GATC 3 cut(s) 12, 220, 507
Eco147I AGGCCT 3 cut(s) 293, 344, 541
Eco47I GGWCC 2 cut(s) 5, 21
Eco57I CTGAAG 1 cut(s) 467
Eco72I CACGTG 1 cut(s) 410
EcoO109I RGGNCCY 1 cut(s) 155
EcoT22I ATGCAT 1 cut(s) 145
FaeI CATG 3 cut(s) 53, 424, 505
FaiI YATR 4 cut(s) 51, 348, 422, 503
FalI AAGNNNNNCTT 2 cut(s) 193, 225
FaqI GGGAC 1 cut(s) 18
FatI CATG 3 cut(s) 49, 420, 501
Fnu4HI GCNGC 4 cut(s) 129, 207, 309, 330
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 4 cut(s) 129, 207, 309, 330
FspBI CTAG 1 cut(s) 435
GluI GCNGC 4 cut(s) 129, 207, 309, 330
HaeIII GGCC 5 cut(s) 157, 196, 293, 344, 541
HapII CCGG 1 cut(s) 115
Hin1II CATG 3 cut(s) 53, 424, 505
HinfI GANTC 2 cut(s) 95, 491
HpaII CCGG 1 cut(s) 115
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 405
Hpy188I TCNGA 7 cut(s) 17, 39, 94, 220, 323, 400, 486
Hpy188III TCNNGA 2 cut(s) 84, 262
Hpy8I GTNNAC 1 cut(s) 405
Hpy99I CGWCG 1 cut(s) 94
HpyAV CCTTC 4 cut(s) 118, 146, 460, 466
HpyCH4III ACNGT 3 cut(s) 21, 90, 180
HpyCH4IV ACGT 2 cut(s) 409, 497
HpyCH4V TGCA 8 cut(s) 136, 143, 175, 332, 350, 413, 501, 525
HpyF10VI GCNNNNNNNGC 1 cut(s) 522
HpyF3I CTNAG 4 cut(s) 217, 312, 393, 456
HpySE526I ACGT 2 cut(s) 409, 497
Hsp92II CATG 3 cut(s) 53, 424, 505
Kzo9I GATC 3 cut(s) 12, 220, 507
LmnI GCTCC 1 cut(s) 364
LpnPI CCDG 7 cut(s) 17, 21, 122, 128, 185, 255, 264
Lsp1109I GCAGC 4 cut(s) 140, 218, 316, 320
LweI GCATC 1 cut(s) 130
MaeI CTAG 1 cut(s) 435
MaeII ACGT 2 cut(s) 409, 497
MalI GATC 3 cut(s) 14, 222, 509
MboI GATC 3 cut(s) 12, 220, 507
MboII GAAGA 2 cut(s) 204, 452
MluCI AATT 2 cut(s) 160, 386
MlyI GAGTC 1 cut(s) 485
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 6 cut(s) 69, 186, 226, 283, 354, 423
Mph1103I ATGCAT 1 cut(s) 145
MspA1I CMGCKG 3 cut(s) 131, 278, 311
MspI CCGG 1 cut(s) 115
MwoI GCNNNNNNNGC 1 cut(s) 522
NdeII GATC 3 cut(s) 12, 220, 507
NlaIII CATG 3 cut(s) 53, 424, 505
NlaIV GGNNCC 1 cut(s) 6
NsiI ATGCAT 1 cut(s) 145
NspI RCATGY 1 cut(s) 424
PceI AGGCCT 3 cut(s) 293, 344, 541
PciI ACATGT 1 cut(s) 420
PcsI WCGNNNNNNNCGW 1 cut(s) 98
PfeI GAWTC 1 cut(s) 95
PinAI ACCGGT 1 cut(s) 114
PkrI GCNGC 4 cut(s) 130, 208, 310, 331
PleI GAGTC 1 cut(s) 485
PmaCI CACGTG 1 cut(s) 410
PmlI CACGTG 1 cut(s) 410
PpsI GAGTC 1 cut(s) 485
Ppu21I YACGTR 2 cut(s) 410, 498
PscI ACATGT 1 cut(s) 420
PspCI CACGTG 1 cut(s) 410
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 3 cut(s) 5, 21, 155
PvuII CAGCTG 2 cut(s) 278, 311
SatI GCNGC 4 cut(s) 129, 207, 309, 330
Sau3AI GATC 3 cut(s) 12, 220, 507
Sau96I GGNCC 3 cut(s) 5, 21, 155
SchI GAGTC 1 cut(s) 485
SfaNI GCATC 1 cut(s) 130
SinI GGWCC 2 cut(s) 5, 21
Sse9I AATT 2 cut(s) 160, 386
SseBI AGGCCT 3 cut(s) 293, 344, 541
SsiI CCGC 1 cut(s) 131
SspMI CTAG 1 cut(s) 435
StuI AGGCCT 3 cut(s) 293, 344, 541
TaaI ACNGT 3 cut(s) 21, 90, 180
TaiI ACGT 2 cut(s) 412, 500
TaqI TCGA 3 cut(s) 85, 101, 122
TasI AATT 2 cut(s) 160, 386
TfiI GAWTC 1 cut(s) 95
TscAI CASTG 2 cut(s) 15, 193
TseI GCWGC 4 cut(s) 128, 206, 308, 329
TspDTI ATGAA 2 cut(s) 87, 479
TspRI CASTG 2 cut(s) 15, 193
VpaK11BI GGWCC 2 cut(s) 5, 21
XceI RCATGY 1 cut(s) 424
XspI CTAG 1 cut(s) 435
Zsp2I ATGCAT 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.