RchiOBHm_Chr7g0190101

Protein SHOOT GRAVITROPISM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0014341
Physical Location & Seq
Reverse (-)
9293144 .. 9293893
750 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16979

Sequence Viewer

Length: 507 bp
ATGGAACACGATGATCAAAAGGAGTTGCAGCTTCTTCCTGGTCCTCCCCCCTTACAGAGGGCAGCCCCTCGACCGTCAGATCCTTCTTCACTACGATACCGATCAAAGGCAGCAGTTGAAGCCCTGGAAGCGCCCAACTCTCTCGACCTCCAACTGTCCATAAGTGTGAGACCACTGATGGGAGCAACCAACAATGTTTGCGAGTACGACCAAACGACGACGGGGTTGAAGCCGAAGGCGAGTTGCGTGGAGGCGCTGAAGTGGCAGGCGGCGGAGCAAATCCGAATGGCGGCAATGGAGAAGGCGTACGCGGAGAGAGTGAGGGAGCTGACGAGGAGGGAGATGGAGCTGGCTCAGTCGGAGTTCACACGTGCGAGGCACATGTGGGAGAGGGCGAGGGAGGAAGTGGAGAAGGCGGAGAGGATGAAGGAGAAGGCAATGCGCCAGATGGACGCCACGTGCATGGAGATCACTTGCCAGTCTTGCAGGCAAAGGTTTAGGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

19.35

Weight (kDa)

8.3

Isoelectric Point (pI)

51.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48550 AT3G48550
fragaria_vesca FvH4_5g08350
malus_domestica MD06G1141500.v1.1 MD14G1156700.v1.1
prunus_persica Prupe.5G150800_v2.0.a1
pyrus_communis pycom14g13030
rosa_chinensis RchiOBHm_Chr7g0190101
rosa_laevigata RLG00000004565
rosa_multiflora Rmu_sc0004886.1_g000011
rosa_roxburghii Rroxscaffold_3G00264880
rosa_rugosa Rorug06G0502300
rosa_samantha Rh7AG107900 Rh7BG110200 Rh7CG112500 Rh7DG110900
rosa_wichuraiana Rw7G009320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 311
AciI CCGC 5 cut(s) 269, 272, 290, 311, 416
AclWI GGATC 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 278
AcvI CACGTG 2 cut(s) 371, 459
AcyI GRCGYC 1 cut(s) 453
AfaI GTAC 2 cut(s) 206, 308
AfiI CCNNNNNNNGG 4 cut(s) 57, 106, 179, 289
AflIII ACRYGT 2 cut(s) 368, 381
AgsI TTSAA 2 cut(s) 119, 229
AjnI CCWGG 2 cut(s) 37, 123
AluBI AGCT 3 cut(s) 31, 328, 349
AluI AGCT 3 cut(s) 31, 328, 349
Alw26I GTCTC 1 cut(s) 163
AlwI GGATC 1 cut(s) 74
AoxI GGCC 1 cut(s) 500
ApeKI GCWGC 3 cut(s) 28, 62, 110
AspLEI GCGC 3 cut(s) 133, 256, 444
AspS9I GGNCC 1 cut(s) 41
AvaII GGWCC 1 cut(s) 41
BbrPI CACGTG 2 cut(s) 371, 459
BbvI GCAGC 3 cut(s) 40, 74, 122
BccI CCATC 3 cut(s) 172, 337, 442
BciT130I CCWGG 2 cut(s) 39, 125
BclI TGATCA 1 cut(s) 13
BcoDI GTCTC 1 cut(s) 163
BfoI RGCGCY 2 cut(s) 134, 257
BisI GCNGC 5 cut(s) 29, 63, 111, 270, 291
BlsI GCNGC 5 cut(s) 30, 64, 112, 271, 292
Bme1390I CCNGG 2 cut(s) 39, 125
Bme18I GGWCC 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 41
BmrFI CCNGG 2 cut(s) 39, 125
BsaAI YACGTR 2 cut(s) 371, 459
BsaBI GATNNNNATC 1 cut(s) 100
BsaHI GRCGYC 1 cut(s) 453
BsaI GGTCTC 1 cut(s) 163
BsaJI CCNNGG 1 cut(s) 123
BsaXI ACNNNNNCTCC 2 cut(s) 290, 320
Bsc4I CCNNNNNNNGG 4 cut(s) 57, 106, 179, 289
Bse1I ACTGG 1 cut(s) 478
Bse3DI GCAATG 2 cut(s) 300, 444
Bse8I GATNNNNATC 1 cut(s) 100
BseBI CCWGG 2 cut(s) 39, 125
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 429
BseJI GATNNNNATC 1 cut(s) 100
BseLI CCNNNNNNNGG 4 cut(s) 57, 106, 179, 289
BseMI GCAATG 2 cut(s) 300, 444
BseMII CTCAG 1 cut(s) 368
BseNI ACTGG 1 cut(s) 478
BseRI GAGGAG 1 cut(s) 349
BseXI GCAGC 3 cut(s) 40, 74, 122
Bsh1236I CGCG 1 cut(s) 311
Bsh1285I CGRYCG 1 cut(s) 74
BshFI GGCC 1 cut(s) 502
BsiEI CGRYCG 1 cut(s) 74
BsiWI CGTACG 1 cut(s) 306
BslI CCNNNNNNNGG 4 cut(s) 57, 106, 179, 289
BsmAI GTCTC 1 cut(s) 163
BsnI GGCC 1 cut(s) 502
Bso31I GGTCTC 1 cut(s) 163
Bsp143I GATC 4 cut(s) 13, 79, 101, 468
BspACI CCGC 5 cut(s) 269, 272, 290, 311, 416
BspANI GGCC 1 cut(s) 502
BspCNI CTCAG 1 cut(s) 367
BspFNI CGCG 1 cut(s) 311
BspPI GGATC 1 cut(s) 74
BspTNI GGTCTC 1 cut(s) 163
BsrDI GCAATG 2 cut(s) 300, 444
BsrI ACTGG 1 cut(s) 478
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 4 cut(s) 13, 79, 101, 468
BssNI GRCGYC 1 cut(s) 453
Bst2UI CCWGG 2 cut(s) 39, 125
Bst4CI ACNGT 2 cut(s) 75, 156
BstACI GRCGYC 1 cut(s) 453
BstBAI YACGTR 2 cut(s) 371, 459
BstC8I GCNNGC 3 cut(s) 267, 351, 488
BstDEI CTNAG 1 cut(s) 354
BstENI CCTNNNNNAGG 1 cut(s) 55
BstF5I GGATG 1 cut(s) 429
BstFNI CGCG 1 cut(s) 311
BstH2I RGCGCY 2 cut(s) 134, 257
BstHHI GCGC 3 cut(s) 133, 256, 444
BstKTI GATC 4 cut(s) 16, 82, 104, 471
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 4 cut(s) 13, 79, 101, 468
BstMCI CGRYCG 1 cut(s) 74
BstMWI GCNNNNNNNGC 4 cut(s) 119, 128, 262, 483
BstNI CCWGG 2 cut(s) 39, 125
BstNSI RCATGY 1 cut(s) 385
BstSCI CCNGG 2 cut(s) 37, 123
BstUI CGCG 1 cut(s) 311
BstV1I GCAGC 3 cut(s) 40, 74, 122
BstX2I RGATCY 1 cut(s) 79
BstXI CCANNNNNNTGG 1 cut(s) 463
BstYI RGATCY 1 cut(s) 79
BsuRI GGCC 1 cut(s) 502
BtsCI GGATG 1 cut(s) 429
BtsIMutI CAGTG 1 cut(s) 173
Cac8I GCNNGC 3 cut(s) 267, 351, 488
CfoI GCGC 3 cut(s) 133, 256, 444
Cfr13I GGNCC 1 cut(s) 41
CseI GACGC 1 cut(s) 461
Csp6I GTAC 2 cut(s) 205, 307
CviAII CATG 2 cut(s) 382, 463
CviJI RGCY 8 cut(s) 31, 65, 122, 232, 328, 349, 353, 502
CviKI_1 RGCY 8 cut(s) 31, 65, 122, 232, 328, 349, 353, 502
CviQI GTAC 2 cut(s) 205, 307
DdeI CTNAG 1 cut(s) 354
DpnI GATC 4 cut(s) 15, 81, 103, 470
DpnII GATC 4 cut(s) 13, 79, 101, 468
EciI GGCGGA 2 cut(s) 287, 431
Eco147I AGGCCT 1 cut(s) 502
Eco31I GGTCTC 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 41
Eco57I CTGAAG 1 cut(s) 278
Eco72I CACGTG 2 cut(s) 371, 459
EcoNI CCTNNNNNAGG 1 cut(s) 55
EcoRII CCWGG 2 cut(s) 37, 123
FaeI CATG 2 cut(s) 385, 466
FaiI YATR 3 cut(s) 161, 383, 464
FatI CATG 2 cut(s) 381, 462
FbaI TGATCA 1 cut(s) 13
Fnu4HI GCNGC 5 cut(s) 29, 63, 111, 270, 291
FokI GGATG 1 cut(s) 436
Fsp4HI GCNGC 5 cut(s) 29, 63, 111, 270, 291
GlaI GCGC 3 cut(s) 132, 255, 443
GluI GCNGC 5 cut(s) 29, 63, 111, 270, 291
HaeII RGCGCY 2 cut(s) 134, 257
HaeIII GGCC 1 cut(s) 502
HgaI GACGC 1 cut(s) 461
HhaI GCGC 3 cut(s) 133, 256, 444
Hin1I GRCGYC 1 cut(s) 453
Hin1II CATG 2 cut(s) 385, 466
Hin6I GCGC 3 cut(s) 131, 254, 442
HinP1I GCGC 3 cut(s) 131, 254, 442
Hpy166II GTNNAC 1 cut(s) 366
Hpy188I TCNGA 3 cut(s) 79, 284, 361
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 1 cut(s) 366
Hpy99I CGWCG 2 cut(s) 220, 223
HpyAV CCTTC 6 cut(s) 93, 229, 295, 406, 421, 427
HpyCH4III ACNGT 2 cut(s) 75, 156
HpyCH4IV ACGT 2 cut(s) 370, 458
HpyCH4V TGCA 3 cut(s) 28, 462, 486
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 128, 262, 483
HpyF3I CTNAG 1 cut(s) 354
HpySE526I ACGT 2 cut(s) 370, 458
Hsp92I GRCGYC 1 cut(s) 453
Hsp92II CATG 2 cut(s) 385, 466
HspAI GCGC 3 cut(s) 131, 254, 442
Ksp22I TGATCA 1 cut(s) 13
Kzo9I GATC 4 cut(s) 13, 79, 101, 468
LmnI GCTCC 4 cut(s) 182, 274, 325, 346
LpnPI CCDG 9 cut(s) 24, 51, 110, 137, 251, 335, 458, 472, 491
Lsp1109I GCAGC 3 cut(s) 40, 74, 122
MaeII ACGT 2 cut(s) 370, 458
MalI GATC 4 cut(s) 15, 81, 103, 470
MboI GATC 4 cut(s) 13, 79, 101, 468
MboII GAAGA 2 cut(s) 26, 78
MflI RGATCY 1 cut(s) 79
MmeI TCCRAC 2 cut(s) 175, 339
MslI CAYNNNNRTG 2 cut(s) 164, 461
MspR9I CCNGG 2 cut(s) 39, 125
MvaI CCWGG 2 cut(s) 39, 125
MvnI CGCG 1 cut(s) 311
MwoI GCNNNNNNNGC 4 cut(s) 119, 128, 262, 483
NdeII GATC 4 cut(s) 13, 79, 101, 468
NlaIII CATG 2 cut(s) 385, 466
NspI RCATGY 1 cut(s) 385
PceI AGGCCT 1 cut(s) 502
PciI ACATGT 1 cut(s) 381
Pfl23II CGTACG 1 cut(s) 306
PkrI GCNGC 5 cut(s) 30, 64, 112, 271, 292
PmaCI CACGTG 2 cut(s) 371, 459
PmlI CACGTG 2 cut(s) 371, 459
Ppu21I YACGTR 2 cut(s) 371, 459
PscI ACATGT 1 cut(s) 381
Psp6I CCWGG 2 cut(s) 37, 123
PspCI CACGTG 2 cut(s) 371, 459
PspGI CCWGG 2 cut(s) 37, 123
PspLI CGTACG 1 cut(s) 306
PspPI GGNCC 1 cut(s) 41
PsuI RGATCY 1 cut(s) 79
RsaI GTAC 2 cut(s) 206, 308
RsaNI GTAC 2 cut(s) 205, 307
RseI CAYNNNNRTG 2 cut(s) 164, 461
SatI GCNGC 5 cut(s) 29, 63, 111, 270, 291
Sau3AI GATC 4 cut(s) 13, 79, 101, 468
Sau96I GGNCC 1 cut(s) 41
ScrFI CCNGG 2 cut(s) 39, 125
SetI ASST 7 cut(s) 33, 150, 330, 351, 373, 461, 497
SinI GGWCC 1 cut(s) 41
SmiMI CAYNNNNRTG 2 cut(s) 164, 461
SseBI AGGCCT 1 cut(s) 502
SsiI CCGC 5 cut(s) 269, 272, 290, 311, 416
StuI AGGCCT 1 cut(s) 502
StyD4I CCNGG 2 cut(s) 37, 123
TaaI ACNGT 2 cut(s) 75, 156
TaiI ACGT 2 cut(s) 373, 461
TaqI TCGA 2 cut(s) 70, 144
TauI GCSGC 2 cut(s) 272, 293
TscAI CASTG 1 cut(s) 180
TseI GCWGC 3 cut(s) 28, 62, 110
TspDTI ATGAA 1 cut(s) 440
TspRI CASTG 1 cut(s) 180
VpaK11BI GGWCC 1 cut(s) 41
XagI CCTNNNNNAGG 1 cut(s) 55
XceI RCATGY 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.