MD06G1141500.v1.1

Protein SHOOT GRAVITROPISM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0014341
Physical Location & Seq
Reverse (-)
28510518 .. 28511030
513 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1141500.v1.1.491

Sequence Viewer

Length: 513 bp
ATGGAAGGAGATGATCAAAAGGAGTTGCAGCTCCTCCCTTCTCCTCACTTGATGACATCTCGGCCGTCGGGTTCTTCGATAAGATATCATCGATCAAAGTCAGCAGTGCAGGAAGGGCCTAATAATTCCCAGCTTGACCTACAATTATCAATCAGTGTAAGGCCAGCCAAACCTTCTTCCTCGGATCATTACGTCTTTTCAAATCCAAACACTTCCGAGTTTGATGCCTTGAATCCCAAGGCAGCCGGCCGCGTAGAGTCTTTGAAATGGCAGGCGGCGGAGCAAATCAGACTGGCGGCAATGGAGAAGGCCTACGCGGAGCGAGTGAGGGAGCTGACGAGGAGAGAGATGGAGTTGGCTCAGTCGGAGTTTGCACGTGCCCGGCACATGTGGGAGAGAGCGAGAGAGGAAGTGGAGAAGGCTGAGAGAATGAAGGAGAAGGCAATGCTTCAGATGGACTCTACGTGCATGGAGATCACTTGCCAGTCGTGCCGGCAAAGGTTTAGGCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.58

Weight (kDa)

8.48

Isoelectric Point (pI)

62.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48550 AT3G48550
fragaria_vesca FvH4_5g08350
malus_domestica MD06G1141500.v1.1 MD14G1156700.v1.1
prunus_persica Prupe.5G150800_v2.0.a1
pyrus_communis pycom14g13030
rosa_chinensis RchiOBHm_Chr7g0190101
rosa_laevigata RLG00000004565
rosa_multiflora Rmu_sc0004886.1_g000011
rosa_roxburghii Rroxscaffold_3G00264880
rosa_rugosa Rorug06G0502300
rosa_samantha Rh7AG107900 Rh7BG110200 Rh7CG112500 Rh7DG110900
rosa_wichuraiana Rw7G009320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 252, 317
AciI CCGC 5 cut(s) 250, 275, 278, 296, 317
AclWI GGATC 1 cut(s) 192
AcoI YGGCCR 2 cut(s) 62, 247
AcuI CTGAAG 1 cut(s) 434
AcvI CACGTG 1 cut(s) 377
AflIII ACRYGT 1 cut(s) 387
AgsI TTSAA 3 cut(s) 201, 232, 265
AluBI AGCT 3 cut(s) 31, 133, 334
AluI AGCT 3 cut(s) 31, 133, 334
AlwI GGATC 1 cut(s) 192
AoxI GGCC 6 cut(s) 62, 116, 161, 247, 309, 506
ApeKI GCWGC 2 cut(s) 28, 242
AspS9I GGNCC 1 cut(s) 116
AsuC2I CCSGG 1 cut(s) 382
BaeGI GKGCMC 1 cut(s) 382
BbrPI CACGTG 1 cut(s) 377
BbvI GCAGC 2 cut(s) 40, 254
BccI CCATC 2 cut(s) 343, 448
BceAI ACGGC 2 cut(s) 49, 493
BcgI CGANNNNNNTGC 2 cut(s) 206, 240
BclI TGATCA 1 cut(s) 13
BcnI CCSGG 1 cut(s) 382
BisI GCNGC 5 cut(s) 29, 243, 250, 276, 297
BlsI GCNGC 5 cut(s) 30, 244, 251, 277, 298
Bme1390I CCNGG 1 cut(s) 382
BmgT120I GGNCC 1 cut(s) 116
BmrFI CCNGG 1 cut(s) 382
BmsI GCATC 1 cut(s) 214
BpuMI CCSGG 1 cut(s) 382
Bsa29I ATCGAT 1 cut(s) 91
BsaAI YACGTR 2 cut(s) 377, 465
BsaJI CCNNGG 2 cut(s) 180, 237
Bse118I RCCGGY 2 cut(s) 245, 492
Bse1I ACTGG 2 cut(s) 297, 484
Bse3DI GCAATG 2 cut(s) 306, 450
BseCI ATCGAT 1 cut(s) 91
BseDI CCNNGG 2 cut(s) 180, 237
BseMI GCAATG 2 cut(s) 306, 450
BseMII CTCAG 2 cut(s) 374, 414
BseNI ACTGG 2 cut(s) 297, 484
BseRI GAGGAG 3 cut(s) 23, 33, 355
BseSI GKGCMC 1 cut(s) 382
BseX3I CGGCCG 2 cut(s) 62, 247
BseXI GCAGC 2 cut(s) 40, 254
BseYI CCCAGC 1 cut(s) 129
BsgI GTGCAG 1 cut(s) 128
Bsh1236I CGCG 2 cut(s) 252, 317
Bsh1285I CGRYCG 2 cut(s) 65, 250
BshFI GGCC 6 cut(s) 64, 118, 163, 249, 311, 508
BshVI ATCGAT 1 cut(s) 91
BsiEI CGRYCG 2 cut(s) 65, 250
BsiSI CCGG 3 cut(s) 246, 382, 493
BsnI GGCC 6 cut(s) 64, 118, 163, 249, 311, 508
Bsp1286I GDGCHC 1 cut(s) 382
Bsp143I GATC 4 cut(s) 13, 92, 184, 474
BspACI CCGC 5 cut(s) 250, 275, 278, 296, 317
BspANI GGCC 6 cut(s) 64, 118, 163, 249, 311, 508
BspCNI CTCAG 2 cut(s) 373, 415
BspDI ATCGAT 1 cut(s) 91
BspFNI CGCG 2 cut(s) 252, 317
BspPI GGATC 1 cut(s) 192
BsrDI GCAATG 2 cut(s) 306, 450
BsrFI RCCGGY 2 cut(s) 245, 492
BsrI ACTGG 2 cut(s) 297, 484
BssAI RCCGGY 2 cut(s) 245, 492
BssECI CCNNGG 2 cut(s) 180, 237
BssMI GATC 4 cut(s) 13, 92, 184, 474
BssT1I CCWWGG 1 cut(s) 237
BstBAI YACGTR 2 cut(s) 377, 465
BstC8I GCNNGC 4 cut(s) 165, 247, 273, 494
BstDEI CTNAG 2 cut(s) 360, 423
BstFNI CGCG 2 cut(s) 252, 317
BstKTI GATC 4 cut(s) 16, 95, 187, 477
BstMBI GATC 4 cut(s) 13, 92, 184, 474
BstMCI CGRYCG 2 cut(s) 65, 250
BstMWI GCNNNNNNNGC 2 cut(s) 115, 489
BstNSI RCATGY 1 cut(s) 391
BstSCI CCNGG 1 cut(s) 380
BstSLI GKGCMC 1 cut(s) 382
BstUI CGCG 2 cut(s) 252, 317
BstV1I GCAGC 2 cut(s) 40, 254
BstZI CGGCCG 2 cut(s) 62, 247
Bsu15I ATCGAT 1 cut(s) 91
BsuRI GGCC 6 cut(s) 64, 118, 163, 249, 311, 508
BsuTUI ATCGAT 1 cut(s) 91
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 2 cut(s) 111, 160
Cac8I GCNNGC 4 cut(s) 165, 247, 273, 494
Cfr10I RCCGGY 2 cut(s) 245, 492
Cfr13I GGNCC 1 cut(s) 116
ClaI ATCGAT 1 cut(s) 91
CviAII CATG 2 cut(s) 388, 469
DdeI CTNAG 2 cut(s) 360, 423
DpnI GATC 4 cut(s) 15, 94, 186, 476
DpnII GATC 4 cut(s) 13, 92, 184, 474
EaeI YGGCCR 2 cut(s) 62, 247
EagI CGGCCG 2 cut(s) 62, 247
EciI GGCGGA 1 cut(s) 293
EclXI CGGCCG 2 cut(s) 62, 247
Eco130I CCWWGG 1 cut(s) 237
Eco147I AGGCCT 1 cut(s) 311
Eco32I GATATC 1 cut(s) 86
Eco52I CGGCCG 2 cut(s) 62, 247
Eco57I CTGAAG 1 cut(s) 434
Eco72I CACGTG 1 cut(s) 377
EcoO109I RGGNCCY 1 cut(s) 116
EcoRV GATATC 1 cut(s) 86
EcoT14I CCWWGG 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 2 cut(s) 391, 472
FaiI YATR 2 cut(s) 389, 470
FatI CATG 2 cut(s) 387, 468
FbaI TGATCA 1 cut(s) 13
Fnu4HI GCNGC 5 cut(s) 29, 243, 250, 276, 297
Fsp4HI GCNGC 5 cut(s) 29, 243, 250, 276, 297
GluI GCNGC 5 cut(s) 29, 243, 250, 276, 297
GsaI CCCAGC 1 cut(s) 133
HaeIII GGCC 6 cut(s) 64, 118, 163, 249, 311, 508
HapII CCGG 3 cut(s) 246, 382, 493
Hin1II CATG 2 cut(s) 391, 472
HinfI GANTC 3 cut(s) 232, 257, 458
HpaII CCGG 3 cut(s) 246, 382, 493
Hpy188I TCNGA 5 cut(s) 184, 217, 290, 367, 453
Hpy99I CGWCG 1 cut(s) 70
HpyAV CCTTC 7 cut(s) 48, 107, 183, 301, 412, 427, 433
HpyCH4IV ACGT 3 cut(s) 192, 376, 464
HpyCH4V TGCA 4 cut(s) 28, 109, 374, 468
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 489
HpyF3I CTNAG 2 cut(s) 360, 423
HpySE526I ACGT 3 cut(s) 192, 376, 464
Hsp92II CATG 2 cut(s) 391, 472
KroI GCCGGC 2 cut(s) 245, 492
KroNI GCCGGC 2 cut(s) 247, 494
Ksp22I TGATCA 1 cut(s) 13
Kzo9I GATC 4 cut(s) 13, 92, 184, 474
LmnI GCTCC 4 cut(s) 36, 280, 319, 331
LpnPI CCDG 9 cut(s) 95, 143, 177, 257, 259, 278, 395, 497, 506
Lsp1109I GCAGC 2 cut(s) 40, 254
LweI GCATC 1 cut(s) 214
MaeII ACGT 3 cut(s) 192, 376, 464
MalI GATC 4 cut(s) 15, 94, 186, 476
MboI GATC 4 cut(s) 13, 92, 184, 474
MboII GAAGA 2 cut(s) 66, 168
MhlI GDGCHC 1 cut(s) 382
MluCI AATT 2 cut(s) 124, 143
MlyI GAGTC 2 cut(s) 266, 452
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 6 cut(s) 44, 54, 190, 321, 333, 400
MroNI GCCGGC 2 cut(s) 245, 492
MspI CCGG 3 cut(s) 246, 382, 493
MspR9I CCNGG 1 cut(s) 382
MvnI CGCG 2 cut(s) 252, 317
MwoI GCNNNNNNNGC 2 cut(s) 115, 489
NaeI GCCGGC 2 cut(s) 247, 494
NciI CCSGG 1 cut(s) 382
NdeII GATC 4 cut(s) 13, 92, 184, 474
NgoMIV GCCGGC 2 cut(s) 245, 492
NlaIII CATG 2 cut(s) 391, 472
NmeAIII GCCGAG 1 cut(s) 40
NspI RCATGY 1 cut(s) 391
PceI AGGCCT 1 cut(s) 311
PciI ACATGT 1 cut(s) 387
PcsI WCGNNNNNNNCGW 1 cut(s) 74
PdiI GCCGGC 2 cut(s) 247, 494
PfeI GAWTC 1 cut(s) 232
PkrI GCNGC 5 cut(s) 30, 244, 251, 277, 298
PleI GAGTC 2 cut(s) 265, 452
PmaCI CACGTG 1 cut(s) 377
PmlI CACGTG 1 cut(s) 377
PpsI GAGTC 2 cut(s) 265, 452
Ppu21I YACGTR 2 cut(s) 377, 465
PscI ACATGT 1 cut(s) 387
PspCI CACGTG 1 cut(s) 377
PspFI CCCAGC 1 cut(s) 129
PspPI GGNCC 1 cut(s) 116
SatI GCNGC 5 cut(s) 29, 243, 250, 276, 297
Sau3AI GATC 4 cut(s) 13, 92, 184, 474
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 2 cut(s) 266, 452
ScrFI CCNGG 1 cut(s) 382
SduI GDGCHC 1 cut(s) 382
SetI ASST 9 cut(s) 33, 135, 141, 175, 195, 336, 379, 467, 503
SfaNI GCATC 1 cut(s) 214
Sse9I AATT 2 cut(s) 124, 143
SseBI AGGCCT 1 cut(s) 311
SsiI CCGC 5 cut(s) 250, 275, 278, 296, 317
StuI AGGCCT 1 cut(s) 311
StyD4I CCNGG 1 cut(s) 380
StyI CCWWGG 1 cut(s) 237
TaiI ACGT 3 cut(s) 195, 379, 467
TaqI TCGA 2 cut(s) 77, 91
TasI AATT 2 cut(s) 124, 143
TauI GCSGC 3 cut(s) 252, 278, 299
TfiI GAWTC 1 cut(s) 232
TscAI CASTG 2 cut(s) 111, 160
TseI GCWGC 2 cut(s) 28, 242
TspDTI ATGAA 1 cut(s) 446
TspRI CASTG 2 cut(s) 111, 160
XceI RCATGY 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.