MD14G1156700.v1.1

Protein SHOOT GRAVITROPISM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0014341
Physical Location & Seq
Reverse (-)
25103524 .. 25104036
513 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1156700.v1.1.491

Sequence Viewer

Length: 513 bp
ATGGAAGGAGATGATCAAAAGGAGTTGCAGCTCCTCCCTTCTCCTCACTGGATGACATCTCTGCCGTCGGATTCTTCCATAAGATATCGTCGATCAAAGTCAGCAGTGCAGGAAGGGCCTAATGATTCCCAGCTTGACCTACAATTATCAATCAGTGTAAGGCCAGCCAAACCTTCTTCCTCGGATTGTTATGTCTTCGACAATCCGAATACTTCCGAGTTTGATGTCTTGAAGCCCAAGGCAGCCAGTTGCATGGAGTCTTTGAAATGGCAGGCGGCGGAGCAAATCAGACTGGCGGCTACGGAGAAGGCGTACGCGGAGCGAGTGAGGGAGCTCGCAAGGAGAGAGATGGAGTTGGCTCAGTCGGAGTTTACGCGTGCCCGGCACATGTGGGAGAGAGCGAGAGAGGAAGTGGAGAAGGCCGAGAGAATGAAGGAGAAGGCAATGCTTCAGATGGACTCGACGTGCATGGAGATCACTTGCCAGTCGTGCCGGCAAAGGTTTAGGCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.71

Weight (kDa)

6.2

Isoelectric Point (pI)

69.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48550 AT3G48550
fragaria_vesca FvH4_5g08350
malus_domestica MD06G1141500.v1.1 MD14G1156700.v1.1
prunus_persica Prupe.5G150800_v2.0.a1
pyrus_communis pycom14g13030
rosa_chinensis RchiOBHm_Chr7g0190101
rosa_laevigata RLG00000004565
rosa_multiflora Rmu_sc0004886.1_g000011
rosa_roxburghii Rroxscaffold_3G00264880
rosa_rugosa Rorug06G0502300
rosa_samantha Rh7AG107900 Rh7BG110200 Rh7CG112500 Rh7DG110900
rosa_wichuraiana Rw7G009320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 317, 376
AciI CCGC 4 cut(s) 275, 278, 296, 317
AcuI CTGAAG 1 cut(s) 434
AfaI GTAC 1 cut(s) 314
AflIII ACRYGT 2 cut(s) 374, 387
AgsI TTSAA 2 cut(s) 232, 265
AjiI CACGTC 1 cut(s) 465
AluBI AGCT 3 cut(s) 31, 133, 334
AluI AGCT 3 cut(s) 31, 133, 334
Alw21I GWGCWC 1 cut(s) 336
AoxI GGCC 4 cut(s) 116, 161, 420, 506
ApeKI GCWGC 2 cut(s) 28, 242
AspS9I GGNCC 1 cut(s) 116
AsuC2I CCSGG 1 cut(s) 382
BaeGI GKGCMC 1 cut(s) 382
BanII GRGCYC 1 cut(s) 336
BbsI GAAGAC 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 336
BbvI GCAGC 2 cut(s) 40, 254
BccI CCATC 2 cut(s) 343, 448
BceAI ACGGC 2 cut(s) 49, 493
BclI TGATCA 1 cut(s) 13
BcnI CCSGG 1 cut(s) 382
BisI GCNGC 4 cut(s) 29, 243, 276, 297
BlsI GCNGC 4 cut(s) 30, 244, 277, 298
Bme1390I CCNGG 1 cut(s) 382
BmgBI CACGTC 1 cut(s) 465
BmgT120I GGNCC 1 cut(s) 116
BmrFI CCNGG 1 cut(s) 382
BpiI GAAGAC 1 cut(s) 187
BpuMI CCSGG 1 cut(s) 382
BsaJI CCNNGG 2 cut(s) 180, 237
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bse118I RCCGGY 1 cut(s) 492
Bse1I ACTGG 4 cut(s) 53, 246, 297, 484
Bse3DI GCAATG 1 cut(s) 450
BseDI CCNNGG 2 cut(s) 180, 237
BseGI GGATG 1 cut(s) 57
BseMI GCAATG 1 cut(s) 450
BseMII CTCAG 1 cut(s) 374
BseNI ACTGG 4 cut(s) 53, 246, 297, 484
BseRI GAGGAG 2 cut(s) 23, 33
BseSI GKGCMC 1 cut(s) 382
BseXI GCAGC 2 cut(s) 40, 254
BseYI CCCAGC 1 cut(s) 129
BsgI GTGCAG 1 cut(s) 128
Bsh1236I CGCG 2 cut(s) 317, 376
BshFI GGCC 4 cut(s) 118, 163, 422, 508
BsiHKAI GWGCWC 1 cut(s) 336
BsiSI CCGG 2 cut(s) 382, 493
BsiWI CGTACG 1 cut(s) 312
BsnI GGCC 4 cut(s) 118, 163, 422, 508
Bsp1286I GDGCHC 2 cut(s) 336, 382
Bsp143I GATC 3 cut(s) 13, 92, 474
BspACI CCGC 4 cut(s) 275, 278, 296, 317
BspANI GGCC 4 cut(s) 118, 163, 422, 508
BspCNI CTCAG 1 cut(s) 373
BspFNI CGCG 2 cut(s) 317, 376
BsrDI GCAATG 1 cut(s) 450
BsrFI RCCGGY 1 cut(s) 492
BsrI ACTGG 4 cut(s) 53, 246, 297, 484
BssAI RCCGGY 1 cut(s) 492
BssECI CCNNGG 2 cut(s) 180, 237
BssMI GATC 3 cut(s) 13, 92, 474
BssT1I CCWWGG 1 cut(s) 237
BstC8I GCNNGC 5 cut(s) 165, 273, 336, 378, 494
BstDEI CTNAG 1 cut(s) 360
BstF5I GGATG 1 cut(s) 57
BstFNI CGCG 2 cut(s) 317, 376
BstKTI GATC 3 cut(s) 16, 95, 477
BstMBI GATC 3 cut(s) 13, 92, 474
BstMWI GCNNNNNNNGC 3 cut(s) 115, 382, 489
BstNSI RCATGY 1 cut(s) 391
BstSCI CCNGG 1 cut(s) 380
BstSLI GKGCMC 1 cut(s) 382
BstUI CGCG 2 cut(s) 317, 376
BstV1I GCAGC 2 cut(s) 40, 254
BstV2I GAAGAC 1 cut(s) 187
BstXI CCANNNNNNTGG 1 cut(s) 253
BsuRI GGCC 4 cut(s) 118, 163, 422, 508
BtrI CACGTC 1 cut(s) 465
BtsCI GGATG 1 cut(s) 57
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 3 cut(s) 46, 111, 160
Cac8I GCNNGC 5 cut(s) 165, 273, 336, 378, 494
Cfr10I RCCGGY 1 cut(s) 492
Cfr13I GGNCC 1 cut(s) 116
Csp6I GTAC 1 cut(s) 313
CviAII CATG 3 cut(s) 253, 388, 469
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 1 cut(s) 360
DpnI GATC 3 cut(s) 15, 94, 476
DpnII GATC 3 cut(s) 13, 92, 474
EciI GGCGGA 1 cut(s) 293
Ecl136II GAGCTC 1 cut(s) 334
Eco130I CCWWGG 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 336
Eco32I GATATC 1 cut(s) 86
Eco53kI GAGCTC 1 cut(s) 334
Eco57I CTGAAG 1 cut(s) 434
EcoICRI GAGCTC 1 cut(s) 334
EcoO109I RGGNCCY 1 cut(s) 116
EcoRV GATATC 1 cut(s) 86
EcoT14I CCWWGG 1 cut(s) 237
EcoT38I GRGCYC 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 3 cut(s) 256, 391, 472
FaiI YATR 5 cut(s) 80, 192, 254, 389, 470
FatI CATG 3 cut(s) 252, 387, 468
FbaI TGATCA 1 cut(s) 13
Fnu4HI GCNGC 4 cut(s) 29, 243, 276, 297
FokI GGATG 1 cut(s) 64
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 4 cut(s) 29, 243, 276, 297
GluI GCNGC 4 cut(s) 29, 243, 276, 297
GsaI CCCAGC 1 cut(s) 133
HaeIII GGCC 4 cut(s) 118, 163, 422, 508
HapII CCGG 2 cut(s) 382, 493
Hin1II CATG 3 cut(s) 256, 391, 472
HinfI GANTC 4 cut(s) 71, 125, 257, 458
HpaII CCGG 2 cut(s) 382, 493
Hpy166II GTNNAC 1 cut(s) 372
Hpy188I TCNGA 7 cut(s) 70, 184, 207, 217, 290, 367, 453
Hpy188III TCNNGA 1 cut(s) 229
Hpy8I GTNNAC 1 cut(s) 372
Hpy99I CGWCG 3 cut(s) 70, 93, 466
HpyAV CCTTC 7 cut(s) 48, 107, 183, 301, 412, 427, 433
HpyCH4IV ACGT 1 cut(s) 464
HpyCH4V TGCA 4 cut(s) 28, 109, 252, 468
HpyF10VI GCNNNNNNNGC 3 cut(s) 115, 382, 489
HpyF3I CTNAG 1 cut(s) 360
HpySE526I ACGT 1 cut(s) 464
Hsp92II CATG 3 cut(s) 256, 391, 472
KroI GCCGGC 1 cut(s) 492
KroNI GCCGGC 1 cut(s) 494
Ksp22I TGATCA 1 cut(s) 13
Kzo9I GATC 3 cut(s) 13, 92, 474
LmnI GCTCC 4 cut(s) 36, 280, 319, 331
Lsp1109I GCAGC 2 cut(s) 40, 254
MaeII ACGT 1 cut(s) 464
MalI GATC 3 cut(s) 15, 94, 476
MboI GATC 3 cut(s) 13, 92, 474
MboII GAAGA 3 cut(s) 66, 168, 187
MhlI GDGCHC 2 cut(s) 336, 382
MluCI AATT 1 cut(s) 143
MluI ACGCGT 1 cut(s) 374
MlyI GAGTC 2 cut(s) 266, 452
MmeI TCCRAC 2 cut(s) 48, 345
MnlI CCTC 5 cut(s) 44, 54, 190, 321, 400
MroNI GCCGGC 1 cut(s) 492
MspI CCGG 2 cut(s) 382, 493
MspR9I CCNGG 1 cut(s) 382
MvnI CGCG 2 cut(s) 317, 376
MwoI GCNNNNNNNGC 3 cut(s) 115, 382, 489
NaeI GCCGGC 1 cut(s) 494
NciI CCSGG 1 cut(s) 382
NdeII GATC 3 cut(s) 13, 92, 474
NgoMIV GCCGGC 1 cut(s) 492
NlaIII CATG 3 cut(s) 256, 391, 472
NmeAIII GCCGAG 1 cut(s) 448
NspI RCATGY 1 cut(s) 391
PciI ACATGT 1 cut(s) 387
PcsI WCGNNNNNNNCGW 1 cut(s) 308
PdiI GCCGGC 1 cut(s) 494
PfeI GAWTC 2 cut(s) 71, 125
Pfl23II CGTACG 1 cut(s) 312
PkrI GCNGC 4 cut(s) 30, 244, 277, 298
PleI GAGTC 2 cut(s) 265, 452
PpsI GAGTC 2 cut(s) 265, 452
PscI ACATGT 1 cut(s) 387
Psp124BI GAGCTC 1 cut(s) 336
PspFI CCCAGC 1 cut(s) 129
PspLI CGTACG 1 cut(s) 312
PspPI GGNCC 1 cut(s) 116
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SacI GAGCTC 1 cut(s) 336
SatI GCNGC 4 cut(s) 29, 243, 276, 297
Sau3AI GATC 3 cut(s) 13, 92, 474
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 2 cut(s) 266, 452
ScrFI CCNGG 1 cut(s) 382
SduI GDGCHC 2 cut(s) 336, 382
SetI ASST 7 cut(s) 33, 135, 141, 175, 336, 467, 503
Sse9I AATT 1 cut(s) 143
SsiI CCGC 4 cut(s) 275, 278, 296, 317
SstI GAGCTC 1 cut(s) 336
StyD4I CCNGG 1 cut(s) 380
StyI CCWWGG 1 cut(s) 237
TaiI ACGT 1 cut(s) 467
TaqI TCGA 3 cut(s) 91, 198, 461
TasI AATT 1 cut(s) 143
TauI GCSGC 2 cut(s) 278, 299
TfiI GAWTC 2 cut(s) 71, 125
TscAI CASTG 3 cut(s) 53, 111, 160
TseI GCWGC 2 cut(s) 28, 242
TspDTI ATGAA 1 cut(s) 446
TspGWI ACGGA 1 cut(s) 317
TspRI CASTG 3 cut(s) 53, 111, 160
XceI RCATGY 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.