pycom14g13030

Protein SHOOT GRAVITROPISM

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0014341
Physical Location & Seq
Reverse (-)
16049154 .. 16049816
663 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g13030.1

Sequence Viewer

Length: 615 bp
ATGGACATGATGGGCACGCAACTTTTGGCATCCCACACAAACTGTTTTTGCATCAGTCGTATCTGTACTAAAAAACCCTTCATTTGCTTCCTTTTATTTCCAATGGAAGGAGATGATCAAAAGGAGTTGCAGCTCCTCCCTTCTCCTCACTCGATGACATCTCGGCCGTCGGATTCTTCCATAAGATATCGTCGATCAAAGTCAGCAGTGCAGGAAGGGCCTAATGATTCCCAGCTTGACCTACAATTATCAATCAGTGTAAGGCCAGCCAAACCTTCTTCCTCGGATTGTTATGTCTTCGCAAATCCAAATACTTCCGAGTTAGATGTCTTGAAGCCCAAGGCAGCCAGTTGCATGGAGTCTTTGAAATGGCAGGCGGCGGAGCAAATCAGACTGGCGGCTACGGAGAAGGCGTACGCGGAGCAAGTGAGGGAGCTCGCAAGGAGAGAGATGGAGTTGGCTCAGTCGGAGTTTACGCGTGCCCGGCACATGTGGGAGAGAGCGAGAGAGGAAGTGGAGAAGGCCGAGAGAATGAAGGAGAAGGCAATGCTTCAGATGGACTCGACGTGCATGGAGATCACTTGCCAGTCATGCCGGCAAAGGTTTAGGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

23.44

Weight (kDa)

8.06

Isoelectric Point (pI)

59.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48550 AT3G48550
fragaria_vesca FvH4_5g08350
malus_domestica MD06G1141500.v1.1 MD14G1156700.v1.1
prunus_persica Prupe.5G150800_v2.0.a1
pyrus_communis pycom14g13030
rosa_chinensis RchiOBHm_Chr7g0190101
rosa_laevigata RLG00000004565
rosa_multiflora Rmu_sc0004886.1_g000011
rosa_roxburghii Rroxscaffold_3G00264880
rosa_rugosa Rorug06G0502300
rosa_samantha Rh7AG107900 Rh7BG110200 Rh7CG112500 Rh7DG110900
rosa_wichuraiana Rw7G009320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 419, 478
AciI CCGC 4 cut(s) 377, 380, 398, 419
AcoI YGGCCR 1 cut(s) 164
AcuI CTGAAG 1 cut(s) 536
AfaI GTAC 2 cut(s) 67, 416
AfiI CCNNNNNNNGG 1 cut(s) 107
AflIII ACRYGT 2 cut(s) 476, 489
AgsI TTSAA 2 cut(s) 334, 367
AjiI CACGTC 1 cut(s) 567
AluBI AGCT 3 cut(s) 133, 235, 436
AluI AGCT 3 cut(s) 133, 235, 436
Alw21I GWGCWC 1 cut(s) 438
AoxI GGCC 5 cut(s) 164, 218, 263, 522, 608
ApeKI GCWGC 2 cut(s) 130, 344
AspS9I GGNCC 1 cut(s) 218
AsuC2I CCSGG 1 cut(s) 484
BaeGI GKGCMC 2 cut(s) 17, 484
BanII GRGCYC 1 cut(s) 438
BbsI GAAGAC 1 cut(s) 289
Bbv12I GWGCWC 1 cut(s) 438
BbvI GCAGC 2 cut(s) 142, 356
BccI CCATC 3 cut(s) 4, 445, 550
BceAI ACGGC 1 cut(s) 151
BclI TGATCA 1 cut(s) 115
BcnI CCSGG 1 cut(s) 484
BisI GCNGC 4 cut(s) 131, 345, 378, 399
BlsI GCNGC 4 cut(s) 132, 346, 379, 400
Bme1390I CCNGG 1 cut(s) 484
BmgBI CACGTC 1 cut(s) 567
BmgT120I GGNCC 1 cut(s) 218
BmrFI CCNGG 1 cut(s) 484
BmsI GCATC 2 cut(s) 38, 60
BpiI GAAGAC 1 cut(s) 289
BpuMI CCSGG 1 cut(s) 484
BsaJI CCNNGG 2 cut(s) 282, 339
BsaXI ACNNNNNCTCC 2 cut(s) 398, 428
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse118I RCCGGY 1 cut(s) 594
Bse1I ACTGG 3 cut(s) 348, 399, 586
Bse3DI GCAATG 1 cut(s) 552
BseDI CCNNGG 2 cut(s) 282, 339
BseGI GGATG 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMI GCAATG 1 cut(s) 552
BseMII CTCAG 1 cut(s) 476
BseNI ACTGG 3 cut(s) 348, 399, 586
BseRI GAGGAG 2 cut(s) 125, 135
BseSI GKGCMC 2 cut(s) 17, 484
BseX3I CGGCCG 1 cut(s) 164
BseXI GCAGC 2 cut(s) 142, 356
BseYI CCCAGC 1 cut(s) 231
BsgI GTGCAG 1 cut(s) 230
Bsh1236I CGCG 2 cut(s) 419, 478
Bsh1285I CGRYCG 1 cut(s) 167
BshFI GGCC 5 cut(s) 166, 220, 265, 524, 610
BsiEI CGRYCG 1 cut(s) 167
BsiHKAI GWGCWC 1 cut(s) 438
BsiSI CCGG 2 cut(s) 484, 595
BsiWI CGTACG 1 cut(s) 414
BslI CCNNNNNNNGG 1 cut(s) 107
BsnI GGCC 5 cut(s) 166, 220, 265, 524, 610
Bsp1286I GDGCHC 3 cut(s) 17, 438, 484
Bsp143I GATC 3 cut(s) 115, 194, 576
BspACI CCGC 4 cut(s) 377, 380, 398, 419
BspANI GGCC 5 cut(s) 166, 220, 265, 524, 610
BspCNI CTCAG 1 cut(s) 475
BspFNI CGCG 2 cut(s) 419, 478
BsrDI GCAATG 1 cut(s) 552
BsrFI RCCGGY 1 cut(s) 594
BsrI ACTGG 3 cut(s) 348, 399, 586
BssAI RCCGGY 1 cut(s) 594
BssECI CCNNGG 2 cut(s) 282, 339
BssMI GATC 3 cut(s) 115, 194, 576
BssT1I CCWWGG 1 cut(s) 339
Bst4CI ACNGT 1 cut(s) 44
BstC8I GCNNGC 6 cut(s) 17, 267, 375, 438, 480, 596
BstDEI CTNAG 1 cut(s) 462
BstF5I GGATG 1 cut(s) 29
BstFNI CGCG 2 cut(s) 419, 478
BstKTI GATC 3 cut(s) 118, 197, 579
BstMBI GATC 3 cut(s) 115, 194, 576
BstMCI CGRYCG 1 cut(s) 167
BstMWI GCNNNNNNNGC 3 cut(s) 217, 484, 591
BstNSI RCATGY 1 cut(s) 493
BstSCI CCNGG 1 cut(s) 482
BstSLI GKGCMC 2 cut(s) 17, 484
BstUI CGCG 2 cut(s) 419, 478
BstV1I GCAGC 2 cut(s) 142, 356
BstV2I GAAGAC 1 cut(s) 289
BstXI CCANNNNNNTGG 1 cut(s) 355
BstZI CGGCCG 1 cut(s) 164
BsuRI GGCC 5 cut(s) 166, 220, 265, 524, 610
BtrI CACGTC 1 cut(s) 567
BtsCI GGATG 1 cut(s) 29
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 2 cut(s) 213, 262
Cac8I GCNNGC 6 cut(s) 17, 267, 375, 438, 480, 596
Cfr10I RCCGGY 1 cut(s) 594
Cfr13I GGNCC 1 cut(s) 218
Csp6I GTAC 2 cut(s) 66, 415
CviAII CATG 5 cut(s) 7, 355, 490, 571, 591
CviQI GTAC 2 cut(s) 66, 415
DdeI CTNAG 1 cut(s) 462
DpnI GATC 3 cut(s) 117, 196, 578
DpnII GATC 3 cut(s) 115, 194, 576
EaeI YGGCCR 1 cut(s) 164
EagI CGGCCG 1 cut(s) 164
EciI GGCGGA 1 cut(s) 395
Ecl136II GAGCTC 1 cut(s) 436
EclXI CGGCCG 1 cut(s) 164
Eco130I CCWWGG 1 cut(s) 339
Eco147I AGGCCT 1 cut(s) 610
Eco24I GRGCYC 1 cut(s) 438
Eco32I GATATC 1 cut(s) 188
Eco52I CGGCCG 1 cut(s) 164
Eco53kI GAGCTC 1 cut(s) 436
Eco57I CTGAAG 1 cut(s) 536
EcoICRI GAGCTC 1 cut(s) 436
EcoO109I RGGNCCY 1 cut(s) 218
EcoRV GATATC 1 cut(s) 188
EcoT14I CCWWGG 1 cut(s) 339
EcoT38I GRGCYC 1 cut(s) 438
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 5 cut(s) 10, 358, 493, 574, 594
FaiI YATR 7 cut(s) 8, 182, 294, 356, 491, 572, 592
FatI CATG 5 cut(s) 6, 354, 489, 570, 590
FbaI TGATCA 1 cut(s) 115
Fnu4HI GCNGC 4 cut(s) 131, 345, 378, 399
FokI GGATG 1 cut(s) 16
FriOI GRGCYC 1 cut(s) 438
Fsp4HI GCNGC 4 cut(s) 131, 345, 378, 399
GluI GCNGC 4 cut(s) 131, 345, 378, 399
GsaI CCCAGC 1 cut(s) 235
HaeIII GGCC 5 cut(s) 166, 220, 265, 524, 610
HapII CCGG 2 cut(s) 484, 595
Hin1II CATG 5 cut(s) 10, 358, 493, 574, 594
HinfI GANTC 4 cut(s) 173, 227, 359, 560
HpaII CCGG 2 cut(s) 484, 595
Hpy166II GTNNAC 1 cut(s) 474
Hpy188I TCNGA 6 cut(s) 172, 286, 319, 392, 469, 555
Hpy188III TCNNGA 1 cut(s) 331
Hpy8I GTNNAC 1 cut(s) 474
Hpy99I CGWCG 3 cut(s) 172, 195, 568
HpyAV CCTTC 9 cut(s) 88, 101, 150, 209, 285, 403, 514, 529, 535
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4IV ACGT 1 cut(s) 566
HpyCH4V TGCA 5 cut(s) 51, 130, 211, 354, 570
HpyF10VI GCNNNNNNNGC 3 cut(s) 217, 484, 591
HpyF3I CTNAG 1 cut(s) 462
HpySE526I ACGT 1 cut(s) 566
Hsp92II CATG 5 cut(s) 10, 358, 493, 574, 594
KroI GCCGGC 1 cut(s) 594
KroNI GCCGGC 1 cut(s) 596
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 3 cut(s) 115, 194, 576
LmnI GCTCC 4 cut(s) 138, 382, 421, 433
LpnPI CCDG 9 cut(s) 197, 245, 279, 359, 361, 380, 497, 599, 608
Lsp1109I GCAGC 2 cut(s) 142, 356
LweI GCATC 2 cut(s) 38, 60
MaeII ACGT 1 cut(s) 566
MalI GATC 3 cut(s) 117, 196, 578
MboI GATC 3 cut(s) 115, 194, 576
MboII GAAGA 3 cut(s) 168, 270, 289
MhlI GDGCHC 3 cut(s) 17, 438, 484
MluCI AATT 1 cut(s) 245
MluI ACGCGT 1 cut(s) 476
MlyI GAGTC 2 cut(s) 368, 554
MmeI TCCRAC 2 cut(s) 150, 447
MnlI CCTC 5 cut(s) 146, 156, 292, 423, 502
MroNI GCCGGC 1 cut(s) 594
MseI TTAA 1 cut(s) 613
MspI CCGG 2 cut(s) 484, 595
MspR9I CCNGG 1 cut(s) 484
MvnI CGCG 2 cut(s) 419, 478
MwoI GCNNNNNNNGC 3 cut(s) 217, 484, 591
NaeI GCCGGC 1 cut(s) 596
NciI CCSGG 1 cut(s) 484
NdeII GATC 3 cut(s) 115, 194, 576
NgoMIV GCCGGC 1 cut(s) 594
NlaIII CATG 5 cut(s) 10, 358, 493, 574, 594
NmeAIII GCCGAG 2 cut(s) 142, 550
NspI RCATGY 1 cut(s) 493
PceI AGGCCT 1 cut(s) 610
PciI ACATGT 1 cut(s) 489
PcsI WCGNNNNNNNCGW 1 cut(s) 410
PdiI GCCGGC 1 cut(s) 596
PfeI GAWTC 2 cut(s) 173, 227
Pfl23II CGTACG 1 cut(s) 414
PkrI GCNGC 4 cut(s) 132, 346, 379, 400
PleI GAGTC 2 cut(s) 367, 554
PpsI GAGTC 2 cut(s) 367, 554
PscI ACATGT 1 cut(s) 489
Psp124BI GAGCTC 1 cut(s) 438
PspFI CCCAGC 1 cut(s) 231
PspLI CGTACG 1 cut(s) 414
PspPI GGNCC 1 cut(s) 218
RsaI GTAC 2 cut(s) 67, 416
RsaNI GTAC 2 cut(s) 66, 415
SacI GAGCTC 1 cut(s) 438
SaqAI TTAA 1 cut(s) 613
SatI GCNGC 4 cut(s) 131, 345, 378, 399
Sau3AI GATC 3 cut(s) 115, 194, 576
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 2 cut(s) 368, 554
ScrFI CCNGG 1 cut(s) 484
SduI GDGCHC 3 cut(s) 17, 438, 484
SetI ASST 7 cut(s) 135, 237, 243, 277, 438, 569, 605
SfaNI GCATC 2 cut(s) 38, 60
Sse9I AATT 1 cut(s) 245
SseBI AGGCCT 1 cut(s) 610
SsiI CCGC 4 cut(s) 377, 380, 398, 419
SstI GAGCTC 1 cut(s) 438
StuI AGGCCT 1 cut(s) 610
StyD4I CCNGG 1 cut(s) 482
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 1 cut(s) 44
TaiI ACGT 1 cut(s) 569
TaqI TCGA 3 cut(s) 152, 193, 563
TasI AATT 1 cut(s) 245
TatI WGTACW 1 cut(s) 65
TauI GCSGC 2 cut(s) 380, 401
TfiI GAWTC 2 cut(s) 173, 227
Tru1I TTAA 1 cut(s) 613
Tru9I TTAA 1 cut(s) 613
TscAI CASTG 2 cut(s) 213, 262
TseI GCWGC 2 cut(s) 130, 344
TspDTI ATGAA 2 cut(s) 70, 548
TspGWI ACGGA 1 cut(s) 419
TspRI CASTG 2 cut(s) 213, 262
XceI RCATGY 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.