Nodulin-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g08410 |
| malus_domestica | MD06G1141000.v1.1 MD14G1156200.v1.1 |
| prunus_persica | Prupe.5G150100_v2.0.a1 |
| pyrus_communis | pycom06g13100 pycom14g12980 |
| rosa_chinensis | RchiOBHm_Chr7g0190031 |
| rosa_laevigata | RLG00000004570 |
| rosa_multiflora | Rmu_sc0004886.1_g000004 |
| rosa_roxburghii | Rroxscaffold_3G00264940 |
| rosa_rugosa | Rorug06G0501900 |
| rosa_samantha | Rh7BG109600 |
| rosa_wichuraiana | Rw7G009260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 183 |
| AciI | CCGC | 1 cut(s) | 740 |
| AclWI | GGATC | 1 cut(s) | 1123 |
| AcoI | YGGCCR | 2 cut(s) | 174, 741 |
| AcsI | RAATTY | 2 cut(s) | 954, 1042 |
| AcuI | CTGAAG | 3 cut(s) | 806, 897, 1407 |
| AfaI | GTAC | 4 cut(s) | 98, 143, 1169, 1630 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 183, 239, 426, 440, 596, 664, 1034, 1080 |
| AflIII | ACRYGT | 1 cut(s) | 1222 |
| AgsI | TTSAA | 7 cut(s) | 34, 382, 451, 505, 698, 968, 1441 |
| AjiI | CACGTC | 1 cut(s) | 1223 |
| AjnI | CCWGG | 1 cut(s) | 616 |
| Alw21I | GWGCWC | 3 cut(s) | 134, 267, 1396 |
| Alw26I | GTCTC | 4 cut(s) | 307, 365, 1195, 1254 |
| AlwI | GGATC | 1 cut(s) | 1123 |
| Ama87I | CYCGRG | 1 cut(s) | 1598 |
| AoxI | GGCC | 7 cut(s) | 27, 174, 587, 614, 741, 1071, 1452 |
| ApaI | GGGCCC | 1 cut(s) | 1456 |
| ApeKI | GCWGC | 9 cut(s) | 317, 389, 668, 986, 989, 1109, 1415, 1418, 1682 |
| ApoI | RAATTY | 2 cut(s) | 954, 1042 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 506, 538 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1445 |
| AspS9I | GGNCC | 5 cut(s) | 431, 548, 1025, 1452, 1453 |
| AsuC2I | CCSGG | 2 cut(s) | 428, 1347 |
| AsuHPI | GGTGA | 3 cut(s) | 200, 632, 1039 |
| AvaI | CYCGRG | 1 cut(s) | 1598 |
| AvaII | GGWCC | 3 cut(s) | 431, 548, 1025 |
| BaeGI | GKGCMC | 1 cut(s) | 1456 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 448, 481 |
| BalI | TGGCCA | 1 cut(s) | 176 |
| BanII | GRGCYC | 1 cut(s) | 1456 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 912, 944 |
| Bbv12I | GWGCWC | 3 cut(s) | 134, 267, 1396 |
| BbvI | GCAGC | 9 cut(s) | 304, 401, 680, 976, 998, 1096, 1402, 1430, 1694 |
| BccI | CCATC | 5 cut(s) | 39, 559, 791, 989, 1652 |
| BciT130I | CCWGG | 1 cut(s) | 618 |
| BciVI | GTATCC | 2 cut(s) | 206, 449 |
| BclI | TGATCA | 2 cut(s) | 726, 1197 |
| BcnI | CCSGG | 2 cut(s) | 428, 1347 |
| BcoDI | GTCTC | 4 cut(s) | 307, 365, 1195, 1254 |
| BfaI | CTAG | 2 cut(s) | 1382, 1518 |
| BfmI | CTRYAG | 3 cut(s) | 990, 1293, 1416 |
| BfuI | GTATCC | 2 cut(s) | 206, 449 |
| Bme1390I | CCNGG | 3 cut(s) | 428, 618, 1347 |
| Bme18I | GGWCC | 3 cut(s) | 431, 548, 1025 |
| BmeT110I | CYCGRG | 1 cut(s) | 1598 |
| BmgBI | CACGTC | 1 cut(s) | 1223 |
| BmgT120I | GGNCC | 5 cut(s) | 431, 548, 1025, 1452, 1453 |
| BmiI | GGNNCC | 4 cut(s) | 432, 1027, 1453, 1454 |
| BmrFI | CCNGG | 3 cut(s) | 428, 618, 1347 |
| BmrI | ACTGGG | 2 cut(s) | 193, 1408 |
| BmsI | GCATC | 2 cut(s) | 181, 1044 |
| BmuI | ACTGGG | 2 cut(s) | 193, 1408 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 100, 132, 249, 281 |
| BpuEI | CTTGAG | 1 cut(s) | 733 |
| BpuMI | CCSGG | 2 cut(s) | 428, 1347 |
| BsaAI | YACGTR | 1 cut(s) | 355 |
| BsaBI | GATNNNNATC | 2 cut(s) | 217, 776 |
| BsaI | GGTCTC | 1 cut(s) | 365 |
| BsaJI | CCNNGG | 5 cut(s) | 177, 427, 1216, 1346, 1597 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1009, 1039 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 183, 239, 426, 440, 596, 664, 1034, 1080 |
| Bse118I | RCCGGY | 1 cut(s) | 461 |
| Bse1I | ACTGG | 3 cut(s) | 188, 1280, 1403 |
| Bse3DI | GCAATG | 5 cut(s) | 72, 342, 504, 524, 564 |
| Bse8I | GATNNNNATC | 2 cut(s) | 217, 776 |
| BseBI | CCWGG | 1 cut(s) | 618 |
| BseDI | CCNNGG | 5 cut(s) | 177, 427, 1216, 1346, 1597 |
| BseGI | GGATG | 2 cut(s) | 777, 1609 |
| BseJI | GATNNNNATC | 2 cut(s) | 217, 776 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 183, 239, 426, 440, 596, 664, 1034, 1080 |
| BseMI | GCAATG | 5 cut(s) | 72, 342, 504, 524, 564 |
| BseMII | CTCAG | 6 cut(s) | 500, 861, 974, 1236, 1518, 1573 |
| BseNI | ACTGG | 3 cut(s) | 188, 1280, 1403 |
| BseRI | GAGGAG | 3 cut(s) | 1030, 1050, 1732 |
| BseSI | GKGCMC | 1 cut(s) | 1456 |
| BseXI | GCAGC | 9 cut(s) | 304, 401, 680, 976, 998, 1096, 1402, 1430, 1694 |
| BsgI | GTGCAG | 2 cut(s) | 428, 863 |
| BshFI | GGCC | 7 cut(s) | 29, 176, 589, 616, 743, 1073, 1454 |
| BsiHKAI | GWGCWC | 3 cut(s) | 134, 267, 1396 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1598 |
| BsiSI | CCGG | 4 cut(s) | 210, 427, 462, 1346 |
| BslFI | GGGAC | 2 cut(s) | 444, 1011 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 183, 239, 426, 440, 596, 664, 1034, 1080 |
| BsmAI | GTCTC | 4 cut(s) | 307, 365, 1195, 1254 |
| BsmFI | GGGAC | 2 cut(s) | 444, 1011 |
| BsnI | GGCC | 7 cut(s) | 29, 176, 589, 616, 743, 1073, 1454 |
| Bso31I | GGTCTC | 1 cut(s) | 365 |
| BsoBI | CYCGRG | 1 cut(s) | 1598 |
| Bsp120I | GGGCCC | 1 cut(s) | 1452 |
| Bsp1286I | GDGCHC | 4 cut(s) | 134, 267, 1396, 1456 |
| Bsp143I | GATC | 3 cut(s) | 726, 1115, 1197 |
| BspACI | CCGC | 1 cut(s) | 740 |
| BspANI | GGCC | 7 cut(s) | 29, 176, 589, 616, 743, 1073, 1454 |
| BspCNI | CTCAG | 6 cut(s) | 499, 862, 973, 1237, 1517, 1572 |
| BspLI | GGNNCC | 4 cut(s) | 432, 1027, 1453, 1454 |
| BspMAI | CTGCAG | 2 cut(s) | 994, 1420 |
| BspPI | GGATC | 1 cut(s) | 1123 |
| BspTNI | GGTCTC | 1 cut(s) | 365 |
| BsrDI | GCAATG | 5 cut(s) | 72, 342, 504, 524, 564 |
| BsrFI | RCCGGY | 1 cut(s) | 461 |
| BsrI | ACTGG | 3 cut(s) | 188, 1280, 1403 |
| BssAI | RCCGGY | 1 cut(s) | 461 |
| BssECI | CCNNGG | 5 cut(s) | 177, 427, 1216, 1346, 1597 |
| BssMI | GATC | 3 cut(s) | 726, 1115, 1197 |
| BssT1I | CCWWGG | 1 cut(s) | 177 |
| Bst2UI | CCWGG | 1 cut(s) | 618 |
| Bst4CI | ACNGT | 4 cut(s) | 9, 978, 1129, 1369 |
| Bst6I | CTCTTC | 2 cut(s) | 933, 1436 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1484 |
| BstBAI | YACGTR | 1 cut(s) | 355 |
| BstC8I | GCNNGC | 4 cut(s) | 159, 1059, 1107, 1413 |
| BstDEI | CTNAG | 6 cut(s) | 486, 870, 960, 1245, 1504, 1559 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 594 |
| BstF5I | GGATG | 2 cut(s) | 777, 1609 |
| BstKTI | GATC | 3 cut(s) | 729, 1118, 1200 |
| BstMAI | GTCTC | 4 cut(s) | 307, 365, 1195, 1254 |
| BstMBI | GATC | 3 cut(s) | 726, 1115, 1197 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 998, 1400, 1484 |
| BstNI | CCWGG | 1 cut(s) | 618 |
| BstSCI | CCNGG | 3 cut(s) | 426, 616, 1345 |
| BstSFI | CTRYAG | 3 cut(s) | 990, 1293, 1416 |
| BstSLI | GKGCMC | 1 cut(s) | 1456 |
| BstV1I | GCAGC | 9 cut(s) | 304, 401, 680, 976, 998, 1096, 1402, 1430, 1694 |
| BstX2I | RGATCY | 1 cut(s) | 1115 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1739 |
| BstYI | RGATCY | 1 cut(s) | 1115 |
| BsuI | GTATCC | 2 cut(s) | 206, 449 |
| BsuRI | GGCC | 7 cut(s) | 29, 176, 589, 616, 743, 1073, 1454 |
| BtrI | CACGTC | 1 cut(s) | 1223 |
| BtsCI | GGATG | 2 cut(s) | 777, 1609 |
| BtsI | GCAGTG | 2 cut(s) | 267, 1008 |
| BtsIMutI | CAGTG | 7 cut(s) | 14, 267, 1008, 1170, 1287, 1365, 1396 |
| Cac8I | GCNNGC | 4 cut(s) | 159, 1059, 1107, 1413 |
| Cfr10I | RCCGGY | 1 cut(s) | 461 |
| Cfr13I | GGNCC | 5 cut(s) | 431, 548, 1025, 1452, 1453 |
| CseI | GACGC | 1 cut(s) | 510 |
| Csp6I | GTAC | 4 cut(s) | 97, 142, 1168, 1629 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1263, 1298 |
| CviAII | CATG | 4 cut(s) | 14, 1195, 1309, 1696 |
| CviQI | GTAC | 4 cut(s) | 97, 142, 1168, 1629 |
| DdeI | CTNAG | 6 cut(s) | 486, 870, 960, 1245, 1504, 1559 |
| DpnI | GATC | 3 cut(s) | 728, 1117, 1199 |
| DpnII | GATC | 3 cut(s) | 726, 1115, 1197 |
| EaeI | YGGCCR | 2 cut(s) | 174, 741 |
| Eam1104I | CTCTTC | 2 cut(s) | 933, 1436 |
| EarI | CTCTTC | 2 cut(s) | 933, 1436 |
| Eco130I | CCWWGG | 1 cut(s) | 177 |
| Eco147I | AGGCCT | 2 cut(s) | 29, 589 |
| Eco24I | GRGCYC | 1 cut(s) | 1456 |
| Eco31I | GGTCTC | 1 cut(s) | 365 |
| Eco47I | GGWCC | 3 cut(s) | 431, 548, 1025 |
| Eco57I | CTGAAG | 3 cut(s) | 806, 897, 1407 |
| Eco88I | CYCGRG | 1 cut(s) | 1598 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 594 |
| EcoO109I | RGGNCCY | 4 cut(s) | 431, 1025, 1452, 1453 |
| EcoRII | CCWGG | 1 cut(s) | 616 |
| EcoT14I | CCWWGG | 1 cut(s) | 177 |
| EcoT22I | ATGCAT | 1 cut(s) | 1676 |
| EcoT38I | GRGCYC | 1 cut(s) | 1456 |
| ErhI | CCWWGG | 1 cut(s) | 177 |
| FaeI | CATG | 4 cut(s) | 17, 1198, 1312, 1699 |
| FaqI | GGGAC | 2 cut(s) | 444, 1011 |
| FatI | CATG | 4 cut(s) | 13, 1194, 1308, 1695 |
| FbaI | TGATCA | 2 cut(s) | 726, 1197 |
| FokI | GGATG | 2 cut(s) | 764, 1616 |
| FriOI | GRGCYC | 1 cut(s) | 1456 |
| FspBI | CTAG | 2 cut(s) | 1382, 1518 |
| HaeIII | GGCC | 7 cut(s) | 29, 176, 589, 616, 743, 1073, 1454 |
| HapII | CCGG | 4 cut(s) | 210, 427, 462, 1346 |
| HgaI | GACGC | 1 cut(s) | 510 |
| Hin1II | CATG | 4 cut(s) | 17, 1198, 1312, 1699 |
| HinfI | GANTC | 5 cut(s) | 73, 633, 923, 1656, 1744 |
| HpaII | CCGG | 4 cut(s) | 210, 427, 462, 1346 |
| HphI | GGTGA | 3 cut(s) | 200, 632, 1039 |
| Hpy166II | GTNNAC | 5 cut(s) | 144, 642, 1170, 1365, 1726 |
| Hpy188III | TCNNGA | 3 cut(s) | 34, 824, 1012 |
| Hpy8I | GTNNAC | 5 cut(s) | 144, 642, 1170, 1365, 1726 |
| HpyAV | CCTTC | 5 cut(s) | 40, 385, 851, 901, 1619 |
| HpyCH4III | ACNGT | 4 cut(s) | 9, 978, 1129, 1369 |
| HpyCH4IV | ACGT | 3 cut(s) | 354, 638, 1222 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 998, 1400, 1484 |
| HpyF3I | CTNAG | 6 cut(s) | 486, 870, 960, 1245, 1504, 1559 |
| HpySE526I | ACGT | 3 cut(s) | 354, 638, 1222 |
| Hsp92II | CATG | 4 cut(s) | 17, 1198, 1312, 1699 |
| Ksp22I | TGATCA | 2 cut(s) | 726, 1197 |
| Kzo9I | GATC | 3 cut(s) | 726, 1115, 1197 |
| LmnI | GCTCC | 4 cut(s) | 108, 154, 257, 998 |
| Lsp1109I | GCAGC | 9 cut(s) | 304, 401, 680, 976, 998, 1096, 1402, 1430, 1694 |
| LweI | GCATC | 2 cut(s) | 181, 1044 |
| MaeI | CTAG | 2 cut(s) | 1382, 1518 |
| MaeII | ACGT | 3 cut(s) | 354, 638, 1222 |
| MaeIII | GTNAC | 4 cut(s) | 599, 620, 1158, 1637 |
| MalI | GATC | 3 cut(s) | 728, 1117, 1199 |
| MboI | GATC | 3 cut(s) | 726, 1115, 1197 |
| MboII | GAAGA | 7 cut(s) | 370, 710, 790, 863, 911, 920, 1453 |
| MfeI | CAATTG | 1 cut(s) | 1753 |
| MflI | RGATCY | 1 cut(s) | 1115 |
| MhlI | GDGCHC | 4 cut(s) | 134, 267, 1396, 1456 |
| MlsI | TGGCCA | 1 cut(s) | 176 |
| MluCI | AATT | 9 cut(s) | 90, 162, 505, 954, 1042, 1138, 1404, 1462, 1753 |
| MluNI | TGGCCA | 1 cut(s) | 176 |
| MmeI | TCCRAC | 1 cut(s) | 526 |
| Mox20I | TGGCCA | 1 cut(s) | 176 |
| Mph1103I | ATGCAT | 1 cut(s) | 1676 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1445 |
| MscI | TGGCCA | 1 cut(s) | 176 |
| MseI | TTAA | 4 cut(s) | 24, 467, 1590, 1691 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1052 |
| Msp20I | TGGCCA | 1 cut(s) | 176 |
| MspA1I | CMGCKG | 2 cut(s) | 989, 1415 |
| MspI | CCGG | 4 cut(s) | 210, 427, 462, 1346 |
| MspR9I | CCNGG | 3 cut(s) | 428, 618, 1347 |
| MunI | CAATTG | 1 cut(s) | 1753 |
| MvaI | CCWGG | 1 cut(s) | 618 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 998, 1400, 1484 |
| NciI | CCSGG | 2 cut(s) | 428, 1347 |
| NdeII | GATC | 3 cut(s) | 726, 1115, 1197 |
| NlaIII | CATG | 4 cut(s) | 17, 1198, 1312, 1699 |
| NlaIV | GGNNCC | 4 cut(s) | 432, 1027, 1453, 1454 |
| NmuCI | GTSAC | 3 cut(s) | 599, 620, 1158 |
| NsiI | ATGCAT | 1 cut(s) | 1676 |
| PceI | AGGCCT | 2 cut(s) | 29, 589 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1445 |
| PfeI | GAWTC | 5 cut(s) | 73, 633, 923, 1656, 1744 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 183 |
| Ppu21I | YACGTR | 1 cut(s) | 355 |
| PpuMI | RGGWCCY | 2 cut(s) | 431, 1025 |
| Psp5II | RGGWCCY | 2 cut(s) | 431, 1025 |
| Psp6I | CCWGG | 1 cut(s) | 616 |
| PspGI | CCWGG | 1 cut(s) | 616 |
| PspN4I | GGNNCC | 4 cut(s) | 432, 1027, 1453, 1454 |
| PspOMI | GGGCCC | 1 cut(s) | 1452 |
| PspPI | GGNCC | 5 cut(s) | 431, 548, 1025, 1452, 1453 |
| PspPPI | RGGWCCY | 2 cut(s) | 431, 1025 |
| PstI | CTGCAG | 2 cut(s) | 994, 1420 |
| PsuI | RGATCY | 1 cut(s) | 1115 |
| PvuII | CAGCTG | 2 cut(s) | 989, 1415 |
| RsaI | GTAC | 4 cut(s) | 98, 143, 1169, 1630 |
| RsaNI | GTAC | 4 cut(s) | 97, 142, 1168, 1629 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1052 |
| SaqAI | TTAA | 4 cut(s) | 24, 467, 1590, 1691 |
| Sau3AI | GATC | 3 cut(s) | 726, 1115, 1197 |
| Sau96I | GGNCC | 5 cut(s) | 431, 548, 1025, 1452, 1453 |
| ScrFI | CCNGG | 3 cut(s) | 428, 618, 1347 |
| SduI | GDGCHC | 4 cut(s) | 134, 267, 1396, 1456 |
| SfaNI | GCATC | 2 cut(s) | 181, 1044 |
| SfcI | CTRYAG | 3 cut(s) | 990, 1293, 1416 |
| SinI | GGWCC | 3 cut(s) | 431, 548, 1025 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1052 |
| SmlI | CTYRAG | 1 cut(s) | 712 |
| SmoI | CTYRAG | 1 cut(s) | 712 |
| Sse9I | AATT | 9 cut(s) | 90, 162, 505, 954, 1042, 1138, 1404, 1462, 1753 |
| SseBI | AGGCCT | 2 cut(s) | 29, 589 |
| SsiI | CCGC | 1 cut(s) | 740 |
| SspMI | CTAG | 2 cut(s) | 1382, 1518 |
| StuI | AGGCCT | 2 cut(s) | 29, 589 |
| StyD4I | CCNGG | 3 cut(s) | 426, 616, 1345 |
| StyI | CCWWGG | 1 cut(s) | 177 |
| TaaI | ACNGT | 4 cut(s) | 9, 978, 1129, 1369 |
| TaiI | ACGT | 3 cut(s) | 357, 641, 1225 |
| TaqI | TCGA | 1 cut(s) | 1711 |
| TasI | AATT | 9 cut(s) | 90, 162, 505, 954, 1042, 1138, 1404, 1462, 1753 |
| TauI | GCSGC | 1 cut(s) | 743 |
| TfiI | GAWTC | 5 cut(s) | 73, 633, 923, 1656, 1744 |
| Tru1I | TTAA | 4 cut(s) | 24, 467, 1590, 1691 |
| Tru9I | TTAA | 4 cut(s) | 24, 467, 1590, 1691 |
| TscAI | CASTG | 7 cut(s) | 14, 267, 1008, 1177, 1287, 1372, 1403 |
| TseFI | GTSAC | 3 cut(s) | 599, 620, 1158 |
| TseI | GCWGC | 9 cut(s) | 317, 389, 668, 986, 989, 1109, 1415, 1418, 1682 |
| Tsp45I | GTSAC | 3 cut(s) | 599, 620, 1158 |
| TspDTI | ATGAA | 3 cut(s) | 531, 568, 870 |
| TspGWI | ACGGA | 1 cut(s) | 921 |
| TspRI | CASTG | 7 cut(s) | 14, 267, 1008, 1177, 1287, 1372, 1403 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 183 |
| VpaK11BI | GGWCC | 3 cut(s) | 431, 548, 1025 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 594 |
| XapI | RAATTY | 2 cut(s) | 954, 1042 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1445 |
| XspI | CTAG | 2 cut(s) | 1382, 1518 |
| Zsp2I | ATGCAT | 1 cut(s) | 1676 |