Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004886.1

Orthogroup ID

OG0017303

Physical Location & Seq

Genomic Coordinates Forward (+)

21949 .. 24534

Gene Structure 2586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004886.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1767 bp

atggcacagttttatgggaagttcaaggccttcaagaacagcagatggcttgtgtttgtgtgtgcaatgtggattcagtcctttgcaggaattgggtacttgtttgggagcatatctcctgtgataaagagcaccatggggtacacccagaggcagctggcaattctgggagtggccaaggacttgggtgatgctattggattcgttgccggatacttatccgagattatgcccagttgggggcttttggccattggagcagtgctcaattttcttggatatggattgctttggcttatagtctcacaaaagattgctgctttgcctttgtgggtgctctgcattgccatatacgtgggaacgaatggtgagaccttcttcaacacagcagctttgatttcgtgcgtgcagaacttccccaaaagccggggacctgttgtggggatcctgaaaggatacgccggtttaagtggtgcaataataactcagatttatgcaatgttcaatgccccaagcgaagcgtcgttgctttttatgattgcagttggaccatcaatggttgtcattgctctaatgttcattgttaggcctgtgggaggtcacaaacaagtcaggccaggtgacaatgcaggattcatgtttacatatagtgtttgccttgttctggcagcttatttgttgggagttttgatacttgaggatctgtttgacttgagccaaactttgatcacattgtttgcggccatattaatcgttctcatagtgcttccaatcataatccctatcatattggctttcttctccgaaccaaggccattactgcaggagagccttctaattgatgcacagagagaagaagaagggaacaaatctgagcaggcaaatgaggtcatttttagtgaggtggaagatgagaaggcttcagatatagattcccttccatcatcagaaagacaaaaacgaatctctcagcttcaagctaaactgttccaagcagctgcagatggagcagtgagggtcaagaggagaagaggcccccgtagaggagagaatttcaccttgatgcaggcattgataaaggccgatttctggctcatgtttgtttctctattgctagctgctggatctggtttgacagtcatcgacaatttgggtcagatagttttgtcacttgggtacactgatacaagtatttttgtctccatgatcagcatttggaacttcctcggacgtattggtggtggctacttctctgagattatcgtaagagactatgcctacccacgaccagtggtaatggctgtagttcaggtcatcatggcagttgggctttgctactatgctatgggatttccagggcaagtatatgtgtccactgtgctgataggactagggtatggtgctcactgggcaattttgccagctgcagcttcagagctgtttggcttgaagagtttcggggccctctataattttcttacaatggcaaaccctgctggttctcttatattctcagaagtgattgctagtggtatatatgactactatgcagaaaaacaagctacactcagacaccaaaatccaagttcattgcttatcggacccctcagggatgatgatgacctctcttgtgttggtactatatgttattccatcacttttggaatcctatcagcactatgcattgttgcagcaggattaagcatgattgtagtttatcgaacaaggagggtttacacacaactctatgggaatccaaacaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nodulin-like

Protein Analysis

588

Amino Acids

64.03

Weight (kDa)

7.48

Isoelectric Point (pI)

35.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017303)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08410
malus_domestica	MD06G1141000.v1.1 MD14G1156200.v1.1
prunus_persica	Prupe.5G150100_v2.0.a1
pyrus_communis	pycom06g13100 pycom14g12980
rosa_chinensis	RchiOBHm_Chr7g0190031
rosa_laevigata	RLG00000004570
rosa_multiflora	Rmu_sc0004886.1_g000004
rosa_roxburghii	Rroxscaffold_3G00264940
rosa_rugosa	Rorug06G0501900
rosa_samantha	Rh7BG109600
rosa_wichuraiana	Rw7G009260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	740
AclWI	GGATC	4 cut(s)	439, 452, 708, 1132
AcoI	YGGCCR	3 cut(s)	174, 249, 741
AcsI	RAATTY	1 cut(s)	1051
AcuI	CTGAAG	2 cut(s)	906, 1416
AfaI	GTAC	4 cut(s)	98, 143, 1178, 1639
AfiI	CCNNNNNNNGG	9 cut(s)	239, 240, 426, 440, 596, 664, 810, 1043, 1089
AgsI	TTSAA	6 cut(s)	25, 34, 382, 505, 977, 1450
AjnI	CCWGG	2 cut(s)	616, 1354
Alw21I	GWGCWC	4 cut(s)	134, 267, 339, 1405
Alw26I	GTCTC	4 cut(s)	307, 365, 1204, 1263
AlwI	GGATC	4 cut(s)	439, 452, 708, 1132
ApaI	GGGCCC	1 cut(s)	1465
ApoI	RAATTY	1 cut(s)	1051
AseI	ATTAAT	1 cut(s)	749
Asp700I	GAANNNNTTC	1 cut(s)	1454
AspS9I	GGNCC	6 cut(s)	431, 548, 1034, 1461, 1462, 1601
AsuC2I	CCSGG	1 cut(s)	428
AsuHPI	GGTGA	4 cut(s)	200, 380, 632, 1048
AsuNHI	GCTAGC	1 cut(s)	1114
AvaII	GGWCC	3 cut(s)	431, 548, 1601
AxyI	CCTNAGG	1 cut(s)	1607
BaeGI	GKGCMC	1 cut(s)	1465
BaeI	ACNNNNGTAYC	2 cut(s)	448, 481
BalI	TGGCCA	2 cut(s)	176, 251
BamHI	GGATCC	1 cut(s)	444
BanII	GRGCYC	1 cut(s)	1465
Bbv12I	GWGCWC	4 cut(s)	134, 267, 339, 1405
BccI	CCATC	5 cut(s)	39, 559, 949, 998, 1661
BciT130I	CCWGG	2 cut(s)	618, 1356
BciVI	GTATCC	2 cut(s)	206, 449
BclI	TGATCA	2 cut(s)	726, 1206
BcnI	CCSGG	1 cut(s)	428
BcoDI	GTCTC	4 cut(s)	307, 365, 1204, 1263
BfaI	CTAG	3 cut(s)	1115, 1391, 1527
BfmI	CTRYAG	4 cut(s)	821, 999, 1302, 1425
BfuI	GTATCC	2 cut(s)	206, 449
Bme1390I	CCNGG	3 cut(s)	428, 618, 1356
Bme18I	GGWCC	3 cut(s)	431, 548, 1601
BmgT120I	GGNCC	6 cut(s)	431, 548, 1034, 1461, 1462, 1601
BmiI	GGNNCC	6 cut(s)	432, 446, 1036, 1462, 1463, 1603
BmrFI	CCNGG	3 cut(s)	428, 618, 1356
BmrI	ACTGGG	2 cut(s)	228, 1417
BmsI	GCATC	3 cut(s)	181, 832, 1053
BmtI	GCTAGC	1 cut(s)	1118
BmuI	ACTGGG	2 cut(s)	228, 1417
BplI	GAGNNNNNCTC	4 cut(s)	100, 132, 249, 281
BpuEI	CTTGAG	2 cut(s)	716, 733
BpuMI	CCSGG	1 cut(s)	428
BsaAI	YACGTR	1 cut(s)	355
BsaBI	GATNNNNATC	1 cut(s)	217
BsaI	GGTCTC	1 cut(s)	365
BsaJI	CCNNGG	6 cut(s)	135, 177, 427, 809, 1225, 1355
Bsc4I	CCNNNNNNNGG	9 cut(s)	239, 240, 426, 440, 596, 664, 810, 1043, 1089
Bse118I	RCCGGY	1 cut(s)	461
Bse1I	ACTGG	3 cut(s)	234, 1289, 1412
Bse21I	CCTNAGG	1 cut(s)	1607
Bse3DI	GCAATG	5 cut(s)	72, 342, 504, 564, 1589
Bse8I	GATNNNNATC	1 cut(s)	217
BseBI	CCWGG	2 cut(s)	618, 1356
BseDI	CCNNGG	6 cut(s)	135, 177, 427, 809, 1225, 1355
BseGI	GGATG	1 cut(s)	1618
BseJI	GATNNNNATC	1 cut(s)	217
BseLI	CCNNNNNNNGG	9 cut(s)	239, 240, 426, 440, 596, 664, 810, 1043, 1089
BseMI	GCAATG	5 cut(s)	72, 342, 504, 564, 1589
BseMII	CTCAG	7 cut(s)	500, 864, 983, 1245, 1527, 1582, 1621
BseNI	ACTGG	3 cut(s)	234, 1289, 1412
BseRI	GAGGAG	2 cut(s)	1039, 1059
BseSI	GKGCMC	1 cut(s)	1465
BsgI	GTGCAG	1 cut(s)	428
BsiHKAI	GWGCWC	4 cut(s)	134, 267, 339, 1405
BsiSI	CCGG	3 cut(s)	210, 427, 462
BslFI	GGGAC	1 cut(s)	444
BslI	CCNNNNNNNGG	9 cut(s)	239, 240, 426, 440, 596, 664, 810, 1043, 1089
BsmAI	GTCTC	4 cut(s)	307, 365, 1204, 1263
BsmFI	GGGAC	1 cut(s)	444
Bso31I	GGTCTC	1 cut(s)	365
Bsp120I	GGGCCC	1 cut(s)	1461
Bsp1286I	GDGCHC	5 cut(s)	134, 267, 339, 1405, 1465
Bsp143I	GATC	5 cut(s)	444, 700, 726, 1124, 1206
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	1 cut(s)	740
BspCNI	CTCAG	7 cut(s)	499, 865, 982, 1246, 1526, 1581, 1620
BspLI	GGNNCC	6 cut(s)	432, 446, 1036, 1462, 1463, 1603
BspMAI	CTGCAG	3 cut(s)	825, 1003, 1429
BspOI	GCTAGC	1 cut(s)	1118
BspPI	GGATC	4 cut(s)	439, 452, 708, 1132
BspTNI	GGTCTC	1 cut(s)	365
BsrDI	GCAATG	5 cut(s)	72, 342, 504, 564, 1589
BsrFI	RCCGGY	1 cut(s)	461
BsrI	ACTGG	3 cut(s)	234, 1289, 1412
BssAI	RCCGGY	1 cut(s)	461
BssECI	CCNNGG	6 cut(s)	135, 177, 427, 809, 1225, 1355
BssMI	GATC	5 cut(s)	444, 700, 726, 1124, 1206
BssT1I	CCWWGG	3 cut(s)	135, 177, 809
Bst2UI	CCWGG	2 cut(s)	618, 1356
Bst4CI	ACNGT	4 cut(s)	9, 987, 1138, 1378
Bst6I	CTCTTC	2 cut(s)	1024, 1445
BstAPI	GCANNNNNTGC	1 cut(s)	1493
BstBAI	YACGTR	1 cut(s)	355
BstC8I	GCNNGC	6 cut(s)	159, 407, 879, 1068, 1116, 1422
BstDEI	CTNAG	7 cut(s)	486, 873, 969, 1254, 1513, 1568, 1607
BstDSI	CCRYGG	1 cut(s)	135
BstENI	CCTNNNNNAGG	1 cut(s)	594
BstF5I	GGATG	1 cut(s)	1618
BstKTI	GATC	5 cut(s)	447, 703, 729, 1127, 1209
BstMAI	GTCTC	4 cut(s)	307, 365, 1204, 1263
BstMBI	GATC	5 cut(s)	444, 700, 726, 1124, 1206
BstMWI	GCNNNNNNNGC	5 cut(s)	257, 820, 1007, 1409, 1493
BstNI	CCWGG	2 cut(s)	618, 1356
BstSCI	CCNGG	3 cut(s)	426, 616, 1354
BstSFI	CTRYAG	4 cut(s)	821, 999, 1302, 1425
BstSLI	GKGCMC	1 cut(s)	1465
BstX2I	RGATCY	3 cut(s)	444, 700, 1124
BstXI	CCANNNNNNTGG	2 cut(s)	184, 355
BstYI	RGATCY	3 cut(s)	444, 700, 1124
Bsu36I	CCTNAGG	1 cut(s)	1607
BsuI	GTATCC	2 cut(s)	206, 449
BtgI	CCRYGG	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	1618
BtsI	GCAGTG	2 cut(s)	267, 1017
BtsIMutI	CAGTG	6 cut(s)	267, 1017, 1179, 1296, 1374, 1405
Cac8I	GCNNGC	6 cut(s)	159, 407, 879, 1068, 1116, 1422
Cfr10I	RCCGGY	1 cut(s)	461
Cfr13I	GGNCC	6 cut(s)	431, 548, 1034, 1461, 1462, 1601
CseI	GACGC	1 cut(s)	510
Csp6I	GTAC	4 cut(s)	97, 142, 1177, 1638
CviAII	CATG	6 cut(s)	136, 637, 1096, 1204, 1318, 1705
CviQI	GTAC	4 cut(s)	97, 142, 1177, 1638
DdeI	CTNAG	7 cut(s)	486, 873, 969, 1254, 1513, 1568, 1607
DpnI	GATC	5 cut(s)	446, 702, 728, 1126, 1208
DpnII	GATC	5 cut(s)	444, 700, 726, 1124, 1206
EaeI	YGGCCR	3 cut(s)	174, 249, 741
Eam1104I	CTCTTC	2 cut(s)	1024, 1445
EarI	CTCTTC	2 cut(s)	1024, 1445
Eco130I	CCWWGG	3 cut(s)	135, 177, 809
Eco147I	AGGCCT	2 cut(s)	29, 589
Eco24I	GRGCYC	1 cut(s)	1465
Eco31I	GGTCTC	1 cut(s)	365
Eco47I	GGWCC	3 cut(s)	431, 548, 1601
Eco57I	CTGAAG	2 cut(s)	906, 1416
Eco81I	CCTNAGG	1 cut(s)	1607
EcoNI	CCTNNNNNAGG	1 cut(s)	594
EcoO109I	RGGNCCY	4 cut(s)	431, 1034, 1461, 1462
EcoRII	CCWGG	2 cut(s)	616, 1354
EcoT14I	CCWWGG	3 cut(s)	135, 177, 809
EcoT22I	ATGCAT	1 cut(s)	1685
EcoT38I	GRGCYC	1 cut(s)	1465
ErhI	CCWWGG	3 cut(s)	135, 177, 809
FaeI	CATG	6 cut(s)	139, 640, 1099, 1207, 1321, 1708
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	6 cut(s)	135, 636, 1095, 1203, 1317, 1704
FbaI	TGATCA	2 cut(s)	726, 1206
FokI	GGATG	1 cut(s)	1625
FriOI	GRGCYC	1 cut(s)	1465
FspBI	CTAG	3 cut(s)	1115, 1391, 1527
HapII	CCGG	3 cut(s)	210, 427, 462
HgaI	GACGC	1 cut(s)	510
Hin1II	CATG	6 cut(s)	139, 640, 1099, 1207, 1321, 1708
HinfI	GANTC	7 cut(s)	73, 201, 633, 932, 963, 1665, 1753
HpaII	CCGG	3 cut(s)	210, 427, 462
HphI	GGTGA	4 cut(s)	200, 380, 632, 1048
Hpy166II	GTNNAC	5 cut(s)	144, 642, 1179, 1374, 1735
Hpy188III	TCNNGA	3 cut(s)	34, 448, 1021
Hpy8I	GTNNAC	5 cut(s)	144, 642, 1179, 1374, 1735
Hpy99I	CGWCG	1 cut(s)	526
HpyAV	CCTTC	6 cut(s)	40, 385, 842, 854, 910, 947
HpyCH4III	ACNGT	4 cut(s)	9, 987, 1138, 1378
HpyCH4IV	ACGT	2 cut(s)	354, 1231
HpyF10VI	GCNNNNNNNGC	5 cut(s)	257, 820, 1007, 1409, 1493
HpyF3I	CTNAG	7 cut(s)	486, 873, 969, 1254, 1513, 1568, 1607
HpySE526I	ACGT	2 cut(s)	354, 1231
Hsp92II	CATG	6 cut(s)	139, 640, 1099, 1207, 1321, 1708
Ksp22I	TGATCA	2 cut(s)	726, 1206
Kzo9I	GATC	5 cut(s)	444, 700, 726, 1124, 1206
LmnI	GCTCC	3 cut(s)	108, 257, 1007
LweI	GCATC	3 cut(s)	181, 832, 1053
MaeI	CTAG	3 cut(s)	1115, 1391, 1527
MaeII	ACGT	2 cut(s)	354, 1231
MaeIII	GTNAC	3 cut(s)	599, 620, 1167
MalI	GATC	5 cut(s)	446, 702, 728, 1126, 1208
MboI	GATC	5 cut(s)	444, 700, 726, 1124, 1206
MboII	GAAGA	7 cut(s)	370, 790, 866, 869, 920, 1041, 1462
MfeI	CAATTG	1 cut(s)	1762
MflI	RGATCY	3 cut(s)	444, 700, 1124
MhlI	GDGCHC	5 cut(s)	134, 267, 339, 1405, 1465
MlsI	TGGCCA	2 cut(s)	176, 251
MluCI	AATT	9 cut(s)	90, 162, 268, 837, 1051, 1147, 1413, 1471, 1762
MluNI	TGGCCA	2 cut(s)	176, 251
MmeI	TCCRAC	1 cut(s)	526
Mox20I	TGGCCA	2 cut(s)	176, 251
Mph1103I	ATGCAT	1 cut(s)	1685
MroXI	GAANNNNTTC	1 cut(s)	1454
MscI	TGGCCA	2 cut(s)	176, 251
MseI	TTAA	3 cut(s)	467, 749, 1700
MslI	CAYNNNNRTG	2 cut(s)	353, 1061
Msp20I	TGGCCA	2 cut(s)	176, 251
MspA1I	CMGCKG	3 cut(s)	157, 998, 1424
MspI	CCGG	3 cut(s)	210, 427, 462
MspR9I	CCNGG	3 cut(s)	428, 618, 1356
MunI	CAATTG	1 cut(s)	1762
MvaI	CCWGG	2 cut(s)	618, 1356
MwoI	GCNNNNNNNGC	5 cut(s)	257, 820, 1007, 1409, 1493
NciI	CCSGG	1 cut(s)	428
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	5 cut(s)	444, 700, 726, 1124, 1206
NheI	GCTAGC	1 cut(s)	1114
NlaIII	CATG	6 cut(s)	139, 640, 1099, 1207, 1321, 1708
NlaIV	GGNNCC	6 cut(s)	432, 446, 1036, 1462, 1463, 1603
NmuCI	GTSAC	3 cut(s)	599, 620, 1167
NsiI	ATGCAT	1 cut(s)	1685
PceI	AGGCCT	2 cut(s)	29, 589
PdmI	GAANNNNTTC	1 cut(s)	1454
PfeI	GAWTC	7 cut(s)	73, 201, 633, 932, 963, 1665, 1753
Ppu21I	YACGTR	1 cut(s)	355
PpuMI	RGGWCCY	1 cut(s)	431
PshBI	ATTAAT	1 cut(s)	749
Psp5II	RGGWCCY	1 cut(s)	431
Psp6I	CCWGG	2 cut(s)	616, 1354
PspGI	CCWGG	2 cut(s)	616, 1354
PspN4I	GGNNCC	6 cut(s)	432, 446, 1036, 1462, 1463, 1603
PspOMI	GGGCCC	1 cut(s)	1461
PspPI	GGNCC	6 cut(s)	431, 548, 1034, 1461, 1462, 1601
PspPPI	RGGWCCY	1 cut(s)	431
PstI	CTGCAG	3 cut(s)	825, 1003, 1429
PsuI	RGATCY	3 cut(s)	444, 700, 1124
PvuII	CAGCTG	3 cut(s)	157, 998, 1424
RsaI	GTAC	4 cut(s)	98, 143, 1178, 1639
RsaNI	GTAC	4 cut(s)	97, 142, 1177, 1638
RseI	CAYNNNNRTG	2 cut(s)	353, 1061
SaqAI	TTAA	3 cut(s)	467, 749, 1700
Sau3AI	GATC	5 cut(s)	444, 700, 726, 1124, 1206
Sau96I	GGNCC	6 cut(s)	431, 548, 1034, 1461, 1462, 1601
ScrFI	CCNGG	3 cut(s)	428, 618, 1356
SduI	GDGCHC	5 cut(s)	134, 267, 339, 1405, 1465
SfaNI	GCATC	3 cut(s)	181, 832, 1053
SfcI	CTRYAG	4 cut(s)	821, 999, 1302, 1425
SinI	GGWCC	3 cut(s)	431, 548, 1601
SmiMI	CAYNNNNRTG	2 cut(s)	353, 1061
SmlI	CTYRAG	2 cut(s)	695, 712
SmoI	CTYRAG	2 cut(s)	695, 712
Sse9I	AATT	9 cut(s)	90, 162, 268, 837, 1051, 1147, 1413, 1471, 1762
SseBI	AGGCCT	2 cut(s)	29, 589
SsiI	CCGC	1 cut(s)	740
SspMI	CTAG	3 cut(s)	1115, 1391, 1527
StuI	AGGCCT	2 cut(s)	29, 589
StyD4I	CCNGG	3 cut(s)	426, 616, 1354
StyI	CCWWGG	3 cut(s)	135, 177, 809
TaaI	ACNGT	4 cut(s)	9, 987, 1138, 1378
TaiI	ACGT	2 cut(s)	357, 1234
TaqI	TCGA	2 cut(s)	1143, 1720
TasI	AATT	9 cut(s)	90, 162, 268, 837, 1051, 1147, 1413, 1471, 1762
TauI	GCSGC	1 cut(s)	743
TfiI	GAWTC	7 cut(s)	73, 201, 633, 932, 963, 1665, 1753
Tru1I	TTAA	3 cut(s)	467, 749, 1700
Tru9I	TTAA	3 cut(s)	467, 749, 1700
TscAI	CASTG	6 cut(s)	267, 1017, 1186, 1296, 1381, 1412
TseFI	GTSAC	3 cut(s)	599, 620, 1167
Tsp45I	GTSAC	3 cut(s)	599, 620, 1167
TspDTI	ATGAA	3 cut(s)	568, 625, 1578
TspRI	CASTG	6 cut(s)	267, 1017, 1186, 1296, 1381, 1412
VpaK11BI	GGWCC	3 cut(s)	431, 548, 1601
VspI	ATTAAT	1 cut(s)	749
XagI	CCTNNNNNAGG	1 cut(s)	594
XapI	RAATTY	1 cut(s)	1051
XmnI	GAANNNNTTC	1 cut(s)	1454
XspI	CTAG	3 cut(s)	1115, 1391, 1527
Zsp2I	ATGCAT	1 cut(s)	1685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.