Rorug06G0501900

Nodulin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0017303
Physical Location & Seq
Reverse (-)
61657657 .. 61660412
2756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0501900.1

Sequence Viewer

Length: 762 bp
ATGGAAGTCGGCGCTGCGTACAATCCCCGGACGGTGGAGGAGGTCTTCAGAGACTTCAAAGGCCGCAGAGCCGGCTTGCTTAAGGCCCTCACCACCGATGTCGGCTTGTTTTTTCAGCAGTGCGACCCTGAGAAGGAGAATCTTTGCCTCTATGGATTTCCAACCGAGCAGTGGGAAGTTAATTTGCCTGCAGAGGAGGTTCCTCCAGAGCTTCCGGAGCCAGCACTTGGTATCAACTTTGCCAGAGATGGAATGCAAGAAAAAGACTGGTTATCCTTGGTTGCTGTCCACAGTGATGCATGGTTACTTGCAGTGGCCTTTTACTTCGGTGCTAGGTTTCAATTTGATAAGACTGATAGGAAACGCCTTTTTAATATGATAAATGAGCTTCCAACTATATTCGAGATTGTCACAGGGACAGCCAAGAAACAAGTAAAGGAGAGGTCAACAAATTCAAATCATGGCAGCAACAAACCTAAATCAAATTCGAAGAGAGGTTCTGAGTCTCAGGGAAAGTATGCAAAGGTAATGCAAGCAAGGGAAGACTATGAGGATGGCACAGAAGATGAAGATGAGGATGAGCATGGAGAGACACTATGTGGGGCTTGTGGAGAGAACTATGCATCCGATGAATTTTGGATTTGCTGCGATGTCTGTGAGAAGTGGTTCCACGGCAGGTGTGTGAAGATCACCCCAGCAAGGGCTGAGCATATTAAGCAGTACAAATGTCCGTCTTGCAGCAACAAGAGATCCCGGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nodulin-like

Protein Analysis

253

Amino Acids

28.83

Weight (kDa)

5.33

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alfin PF12165 11 - 138 3.6e-67 Alfin
PHD PF00628 200 - 246 7.2e-09 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017303)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g08410
malus_domestica MD06G1141000.v1.1 MD14G1156200.v1.1
prunus_persica Prupe.5G150100_v2.0.a1
pyrus_communis pycom06g13100 pycom14g12980
rosa_chinensis RchiOBHm_Chr7g0190031
rosa_laevigata RLG00000004570
rosa_multiflora Rmu_sc0004886.1_g000004
rosa_roxburghii Rroxscaffold_3G00264940
rosa_rugosa Rorug06G0501900
rosa_samantha Rh7BG109600
rosa_wichuraiana Rw7G009260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 666
Acc36I ACCTGC 1 cut(s) 666
AccB7I CCANNNNNTGG 1 cut(s) 227
AccIII TCCGGA 1 cut(s) 214
AciI CCGC 1 cut(s) 64
AclWI GGATC 1 cut(s) 744
AcsI RAATTY 3 cut(s) 451, 484, 632
AcuI CTGAAG 1 cut(s) 31
AdeI CACNNNGTG 1 cut(s) 599
AfaI GTAC 2 cut(s) 20, 722
AfiI CCNNNNNNNGG 6 cut(s) 34, 133, 171, 227, 699, 700
AflII CTTAAG 1 cut(s) 80
AgsI TTSAA 3 cut(s) 58, 341, 456
AloI GAACNNNNNNTCC 2 cut(s) 608, 640
AluBI AGCT 2 cut(s) 211, 388
AluI AGCT 2 cut(s) 211, 388
Alw26I GTCTC 3 cut(s) 45, 510, 584
AlwI GGATC 1 cut(s) 744
Aor13HI TCCGGA 1 cut(s) 214
AoxI GGCC 4 cut(s) 61, 84, 315, 755
ApeKI GCWGC 4 cut(s) 14, 465, 645, 738
ApoI RAATTY 3 cut(s) 451, 484, 632
Asp700I GAANNNNTTC 1 cut(s) 665
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 85
AsuC2I CCSGG 2 cut(s) 28, 754
AsuHPI GGTGA 2 cut(s) 82, 682
AsuII TTCGAA 1 cut(s) 488
BbsI GAAGAC 2 cut(s) 37, 549
BbvI GCAGC 3 cut(s) 477, 632, 750
BccI CCATC 2 cut(s) 242, 548
BceAI ACGGC 1 cut(s) 688
BcnI CCSGG 2 cut(s) 28, 754
BcoDI GTCTC 3 cut(s) 45, 510, 584
BfaI CTAG 1 cut(s) 333
BfmI CTRYAG 1 cut(s) 189
BfoI RGCGCY 1 cut(s) 15
BfrI CTTAAG 1 cut(s) 80
BfuAI ACCTGC 1 cut(s) 666
BisI GCNGC 5 cut(s) 15, 64, 466, 646, 739
BlpI GCTNAGC 1 cut(s) 705
BlsI GCNGC 5 cut(s) 16, 65, 467, 647, 740
Bme1390I CCNGG 2 cut(s) 28, 754
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 3 cut(s) 201, 219, 668
BmrFI CCNGG 2 cut(s) 28, 754
BmsI GCATC 2 cut(s) 286, 632
BpiI GAAGAC 2 cut(s) 37, 549
BpmI CTGGAG 1 cut(s) 189
Bpu1102I GCTNAGC 1 cut(s) 705
Bpu14I TTCGAA 1 cut(s) 488
BpuMI CCSGG 2 cut(s) 28, 754
BsaJI CCNNGG 3 cut(s) 26, 276, 670
BsaWI WCCGGW 1 cut(s) 214
Bsc4I CCNNNNNNNGG 6 cut(s) 34, 133, 171, 227, 699, 700
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 272
BseAI TCCGGA 1 cut(s) 214
BseDI CCNNGG 3 cut(s) 26, 276, 670
BseGI GGATG 3 cut(s) 559, 583, 623
BseLI CCNNNNNNNGG 6 cut(s) 34, 133, 171, 227, 699, 700
BseMII CTCAG 4 cut(s) 120, 492, 521, 696
BseNI ACTGG 1 cut(s) 272
BseRI GAGGAG 2 cut(s) 53, 209
BseXI GCAGC 3 cut(s) 477, 632, 750
BseYI CCCAGC 1 cut(s) 694
BshFI GGCC 4 cut(s) 63, 86, 317, 757
BsiSI CCGG 4 cut(s) 28, 72, 215, 754
BslFI GGGAC 1 cut(s) 430
BslI CCNNNNNNNGG 6 cut(s) 34, 133, 171, 227, 699, 700
BsmAI GTCTC 3 cut(s) 45, 510, 584
BsmFI GGGAC 1 cut(s) 430
BsmI GAATGC 1 cut(s) 258
BsnI GGCC 4 cut(s) 63, 86, 317, 757
Bsp119I TTCGAA 1 cut(s) 488
Bsp13I TCCGGA 1 cut(s) 214
Bsp143I GATC 2 cut(s) 687, 749
Bsp1720I GCTNAGC 1 cut(s) 705
BspACI CCGC 1 cut(s) 64
BspANI GGCC 4 cut(s) 63, 86, 317, 757
BspCNI CTCAG 4 cut(s) 121, 493, 520, 697
BspEI TCCGGA 1 cut(s) 214
BspLI GGNNCC 3 cut(s) 201, 219, 668
BspMAI CTGCAG 1 cut(s) 193
BspMI ACCTGC 1 cut(s) 666
BspPI GGATC 1 cut(s) 744
BspT104I TTCGAA 1 cut(s) 488
BspTI CTTAAG 1 cut(s) 80
BsrFI RCCGGY 1 cut(s) 71
BsrI ACTGG 1 cut(s) 272
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 3 cut(s) 26, 276, 670
BssMI GATC 2 cut(s) 687, 749
BssT1I CCWWGG 1 cut(s) 276
Bst4CI ACNGT 2 cut(s) 34, 293
Bst6I CTCTTC 1 cut(s) 485
BstAFI CTTAAG 1 cut(s) 80
BstBI TTCGAA 1 cut(s) 488
BstC8I GCNNGC 5 cut(s) 73, 77, 189, 222, 534
BstDEI CTNAG 4 cut(s) 129, 501, 507, 705
BstDSI CCRYGG 1 cut(s) 670
BstF5I GGATG 3 cut(s) 559, 583, 623
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 2 cut(s) 690, 752
BstMAI GTCTC 3 cut(s) 45, 510, 584
BstMBI GATC 2 cut(s) 687, 749
BstMWI GCNNNNNNNGC 3 cut(s) 72, 217, 715
BstSCI CCNGG 2 cut(s) 26, 752
BstSFI CTRYAG 1 cut(s) 189
BstV1I GCAGC 3 cut(s) 477, 632, 750
BstV2I GAAGAC 2 cut(s) 37, 549
BstX2I RGATCY 1 cut(s) 749
BstYI RGATCY 1 cut(s) 749
BsuRI GGCC 4 cut(s) 63, 86, 317, 757
BtgI CCRYGG 1 cut(s) 670
BtgZI GCGATG 1 cut(s) 663
BtsCI GGATG 3 cut(s) 559, 583, 623
BtsI GCAGTG 3 cut(s) 125, 176, 318
BtsIMutI CAGTG 4 cut(s) 125, 176, 298, 318
BveI ACCTGC 1 cut(s) 666
Cac8I GCNNGC 5 cut(s) 73, 77, 189, 222, 534
CfoI GCGC 1 cut(s) 14
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 85
Csp6I GTAC 2 cut(s) 19, 721
CviAII CATG 3 cut(s) 300, 461, 584
CviQI GTAC 2 cut(s) 19, 721
DdeI CTNAG 4 cut(s) 129, 501, 507, 705
DpnI GATC 2 cut(s) 689, 751
DpnII GATC 2 cut(s) 687, 749
DraIII CACNNNGTG 1 cut(s) 599
Eam1104I CTCTTC 1 cut(s) 485
EarI CTCTTC 1 cut(s) 485
Eco130I CCWWGG 1 cut(s) 276
Eco57I CTGAAG 1 cut(s) 31
EcoO109I RGGNCCY 1 cut(s) 85
EcoT14I CCWWGG 1 cut(s) 276
EcoT22I ATGCAT 2 cut(s) 301, 625
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 3 cut(s) 303, 464, 587
FaqI GGGAC 1 cut(s) 430
FatI CATG 3 cut(s) 299, 460, 583
Fnu4HI GCNGC 5 cut(s) 15, 64, 466, 646, 739
FokI GGATG 3 cut(s) 566, 590, 610
Fsp4HI GCNGC 5 cut(s) 15, 64, 466, 646, 739
FspBI CTAG 1 cut(s) 333
GlaI GCGC 1 cut(s) 13
GluI GCNGC 5 cut(s) 15, 64, 466, 646, 739
GsaI CCCAGC 1 cut(s) 698
GsuI CTGGAG 1 cut(s) 189
HaeII RGCGCY 1 cut(s) 15
HaeIII GGCC 4 cut(s) 63, 86, 317, 757
HapII CCGG 4 cut(s) 28, 72, 215, 754
HhaI GCGC 1 cut(s) 14
Hin1II CATG 3 cut(s) 303, 464, 587
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HincII GTYRAC 1 cut(s) 447
HindII GTYRAC 1 cut(s) 447
HinfI GANTC 2 cut(s) 139, 503
HpaII CCGG 4 cut(s) 28, 72, 215, 754
HphI GGTGA 2 cut(s) 82, 682
Hpy166II GTNNAC 2 cut(s) 289, 447
Hpy188I TCNGA 3 cut(s) 50, 502, 628
Hpy188III TCNNGA 3 cut(s) 206, 215, 403
Hpy8I GTNNAC 2 cut(s) 289, 447
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 2 cut(s) 34, 293
HpyCH4V TGCA 8 cut(s) 191, 256, 299, 311, 521, 532, 623, 738
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 217, 715
HpyF3I CTNAG 4 cut(s) 129, 501, 507, 705
Hsp92II CATG 3 cut(s) 303, 464, 587
HspAI GCGC 1 cut(s) 12
Kpn2I TCCGGA 1 cut(s) 214
KroI GCCGGC 1 cut(s) 71
KroNI GCCGGC 1 cut(s) 73
Kzo9I GATC 2 cut(s) 687, 749
LmnI GCTCC 1 cut(s) 217
Lsp1109I GCAGC 3 cut(s) 477, 632, 750
LweI GCATC 2 cut(s) 286, 632
MaeI CTAG 1 cut(s) 333
MaeIII GTNAC 2 cut(s) 303, 409
MalI GATC 2 cut(s) 689, 751
MboI GATC 2 cut(s) 687, 749
MboII GAAGA 6 cut(s) 37, 502, 554, 575, 581, 697
MflI RGATCY 1 cut(s) 749
MluCI AATT 5 cut(s) 181, 341, 451, 484, 632
MlyI GAGTC 1 cut(s) 512
MmeI TCCRAC 2 cut(s) 185, 416
Mph1103I ATGCAT 2 cut(s) 301, 625
MroI TCCGGA 1 cut(s) 214
MroNI GCCGGC 1 cut(s) 71
MroXI GAANNNNTTC 1 cut(s) 665
MseI TTAA 4 cut(s) 81, 180, 372, 714
MslI CAYNNNNRTG 1 cut(s) 294
MspCI CTTAAG 1 cut(s) 80
MspI CCGG 4 cut(s) 28, 72, 215, 754
MspR9I CCNGG 2 cut(s) 28, 754
Mva1269I GAATGC 1 cut(s) 258
MwoI GCNNNNNNNGC 3 cut(s) 72, 217, 715
NaeI GCCGGC 1 cut(s) 73
NciI CCSGG 2 cut(s) 28, 754
NdeII GATC 2 cut(s) 687, 749
NgoMIV GCCGGC 1 cut(s) 71
NlaIII CATG 3 cut(s) 303, 464, 587
NlaIV GGNNCC 3 cut(s) 201, 219, 668
NmuCI GTSAC 1 cut(s) 409
NsiI ATGCAT 2 cut(s) 301, 625
NspV TTCGAA 1 cut(s) 488
PaqCI CACCTGC 1 cut(s) 666
PctI GAATGC 1 cut(s) 258
PdiI GCCGGC 1 cut(s) 73
PdmI GAANNNNTTC 1 cut(s) 665
PfeI GAWTC 1 cut(s) 139
PflMI CCANNNNNTGG 1 cut(s) 227
PkrI GCNGC 5 cut(s) 16, 65, 467, 647, 740
PleI GAGTC 1 cut(s) 511
PpsI GAGTC 1 cut(s) 511
PspFI CCCAGC 1 cut(s) 694
PspN4I GGNNCC 3 cut(s) 201, 219, 668
PspPI GGNCC 1 cut(s) 85
PstI CTGCAG 1 cut(s) 193
PsuI RGATCY 1 cut(s) 749
RsaI GTAC 2 cut(s) 20, 722
RsaNI GTAC 2 cut(s) 19, 721
RseI CAYNNNNRTG 1 cut(s) 294
SaqAI TTAA 4 cut(s) 81, 180, 372, 714
SatI GCNGC 5 cut(s) 15, 64, 466, 646, 739
Sau3AI GATC 2 cut(s) 687, 749
Sau96I GGNCC 1 cut(s) 85
SchI GAGTC 1 cut(s) 512
ScrFI CCNGG 2 cut(s) 28, 754
SfaNI GCATC 2 cut(s) 286, 632
SfcI CTRYAG 1 cut(s) 189
SfuI TTCGAA 1 cut(s) 488
SmiMI CAYNNNNRTG 1 cut(s) 294
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 5 cut(s) 181, 341, 451, 484, 632
SsiI CCGC 1 cut(s) 64
SspMI CTAG 1 cut(s) 333
StyD4I CCNGG 2 cut(s) 26, 752
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 2 cut(s) 34, 293
TaqI TCGA 2 cut(s) 402, 488
TasI AATT 5 cut(s) 181, 341, 451, 484, 632
TatI WGTACW 1 cut(s) 720
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 4 cut(s) 81, 180, 372, 714
Tru9I TTAA 4 cut(s) 81, 180, 372, 714
TscAI CASTG 4 cut(s) 125, 176, 298, 318
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 4 cut(s) 14, 465, 645, 738
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 2 cut(s) 582, 645
TspGWI ACGGA 1 cut(s) 720
TspRI CASTG 4 cut(s) 125, 176, 298, 318
Van91I CCANNNNNTGG 1 cut(s) 227
Vha464I CTTAAG 1 cut(s) 80
XapI RAATTY 3 cut(s) 451, 484, 632
XcmI CCANNNNNNNNNTGG 1 cut(s) 168
XmnI GAANNNNTTC 1 cut(s) 665
XspI CTAG 1 cut(s) 333
Zsp2I ATGCAT 2 cut(s) 301, 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.