FvH4_5g09640

protein import into mitochondrial matrix

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
5564659 .. 5567936
3278 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g09640.t2

Sequence Viewer

Length: 1233 bp
ATGGGGAGCCTCGGGAGATCATATGAGACGTCGCCAGCGGCGGAGCTCCGATCAAAGCTCCTCAGAGTCTTCCGCGGCCACGAACAAGTGAAGAACGCTTTCCACCAACTGAAATCTCAGATCCAAATCGGCCTTCTCCAAGCCGAAGACGTCTTCGCGTCTCTGGCGATTCCGCTGATGAAGCTCGTAGGTCTCAAGACGGTGGAGATGGCGACGGAGGGCCGCTTCACCTCCTTCATCATCCAAACCGACTCCGATTTGCGTTCTCAGCATCAGAGTTTCGGATCGGGATCCGGACCCTCGGGTCGGTCGGGTCAGTCCGATCGGAACCGCCAGTGTGCGAAGATAGAGATCTACGCCGCCAAGGCGGCGGTGGCCGGCGAAATGGTAATCGAGAAGCAAAAGGATCAGCTGATTCAGCTCGTCCGGATTCTGAAGCAAATCGAGTCCCAGGTGAACAACGGCCAGAGCCGCATGGTCCAAACCCTAGCCAATCGCCGCCATTCCCTCCGCAGATTCTTCCAGAGAGCCGTCGCTTACTTATCCACCGTTGACCGCGTTGACCAGGTGGCGGTGGTGAACCTCCTCCGGGAGATTTTCAACGAAGTGAGTGCGGTGTTGGAGTCGGTGGAGGCTGACGTGGAGGGCCTGGTGGAGGATTTGGCGGAGAAGATGTGTGAGCCGATGGTGAAGTATGTGGAGGGGGTTAAGGCTGATTTGAGAAATGGGGCTTGTTTGGGGTTAGTGGGATTGGTGAAGGAGATGGCCAGGGCGGCAGGGGATTCAAAGGCGGAGTTGGAGGCGGCGAGGAGTAAGGCCACGGCGGCTGAAGAGAGTAGAGCTGAGGCTATGAGGAGGCTTAGGGAATCAGAGGAATATGTGAGGAGATTGAAGGAATGCTTCAAGTTATTGCCAGAGGCTAGTAAAGCATCTACCAAAGTAACCAAAGGCTTTGCTTCACATAAGATTTTAGGCATGGAGAAAGATCAAGCCAAAGATGAGCAGCTGTTATGGGAGCTATTGGAAAAGAAGAGAAAGTATCAAACTCCAGAGAGTCCACTTGGACCCAGTGAGCTTCTTCCCCTTCATCAATCGAATAACAAGCGCCAAAAGGCAACACATGTAAAGTTACCAGTGAGAAGCAGCAACTCTTATTCACTGCGTTCAAGAACCCCACGTTTGATGGCTGCTCAGATACCCTTGGGCTCGTCCCCTTCAGTGACATTTCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

411

Amino Acids

45.66

Weight (kDa)

9.61

Isoelectric Point (pI)

60.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 303
AatII GACGTC 2 cut(s) 32, 153
AccII CGCG 3 cut(s) 75, 158, 558
AccIII TCCGGA 2 cut(s) 293, 426
AclWI GGATC 5 cut(s) 115, 285, 292, 298, 414
AcoI YGGCCR 4 cut(s) 76, 375, 463, 765
AcuI CTGAAG 3 cut(s) 455, 849, 1200
AcyI GRCGYC 2 cut(s) 29, 150
AfiI CCNNNNNNNGG 4 cut(s) 306, 571, 589, 655
AflIII ACRYGT 1 cut(s) 1120
AgsI TTSAA 5 cut(s) 601, 786, 892, 904, 1167
AjiI CACGTC 1 cut(s) 640
AjnI CCWGG 4 cut(s) 450, 564, 648, 767
AjuI GAANNNNNNNTTGG 2 cut(s) 117, 149
AluBI AGCT 9 cut(s) 46, 58, 184, 412, 421, 842, 1006, 1018, 1075
AluI AGCT 9 cut(s) 46, 58, 184, 412, 421, 842, 1006, 1018, 1075
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 3 cut(s) 20, 165, 197
AlwI GGATC 5 cut(s) 115, 285, 292, 298, 414
Ama87I CYCGRG 2 cut(s) 11, 301
Aor13HI TCCGGA 2 cut(s) 293, 426
AoxI GGCC 8 cut(s) 76, 130, 220, 375, 463, 646, 765, 816
ApeKI GCWGC 3 cut(s) 1003, 1143, 1187
Asp700I GAANNNNTTC 1 cut(s) 98
AspLEI GCGC 1 cut(s) 1107
AspS9I GGNCC 5 cut(s) 220, 296, 478, 646, 1064
AsuC2I CCSGG 1 cut(s) 590
AsuHPI GGTGA 5 cut(s) 220, 466, 589, 700, 766
AvaI CYCGRG 2 cut(s) 11, 301
AvaII GGWCC 3 cut(s) 296, 478, 1064
BalI TGGCCA 1 cut(s) 767
BamHI GGATCC 1 cut(s) 290
BanII GRGCYC 2 cut(s) 48, 1208
BbsI GAAGAC 3 cut(s) 61, 145, 153
Bbv12I GWGCWC 1 cut(s) 48
BbvCI CCTCAGC 1 cut(s) 843
BbvI GCAGC 3 cut(s) 1015, 1155, 1174
BccI CCATC 4 cut(s) 202, 679, 757, 1177
BceAI ACGGC 3 cut(s) 478, 515, 837
BcgI CGANNNNNNTGC 2 cut(s) 593, 627
BciT130I CCWGG 4 cut(s) 452, 566, 650, 769
BcnI CCSGG 1 cut(s) 590
BcoDI GTCTC 3 cut(s) 20, 165, 197
BfaI CTAG 2 cut(s) 488, 921
BfoI RGCGCY 1 cut(s) 1108
BglI GCCNNNNNGGC 4 cut(s) 365, 368, 773, 824
BglII AGATCT 1 cut(s) 351
Bme1390I CCNGG 5 cut(s) 452, 566, 590, 650, 769
Bme18I GGWCC 3 cut(s) 296, 478, 1064
BmeT110I CYCGRG 2 cut(s) 11, 301
BmgBI CACGTC 1 cut(s) 640
BmgT120I GGNCC 5 cut(s) 220, 296, 478, 646, 1064
BmiI GGNNCC 5 cut(s) 8, 292, 298, 329, 1066
BmrFI CCNGG 5 cut(s) 452, 566, 590, 650, 769
BmrI ACTGGG 1 cut(s) 1062
BmsI GCATC 2 cut(s) 280, 938
BmuI ACTGGG 1 cut(s) 1062
BpiI GAAGAC 3 cut(s) 61, 145, 153
BpmI CTGGAG 1 cut(s) 1032
Bpu10I CCTNAGC 2 cut(s) 843, 860
BpuEI CTTGAG 1 cut(s) 179
BpuMI CCSGG 1 cut(s) 590
BsaBI GATNNNNATC 3 cut(s) 125, 289, 350
BsaHI GRCGYC 2 cut(s) 29, 150
BsaI GGTCTC 1 cut(s) 197
BsaJI CCNNGG 8 cut(s) 10, 73, 300, 363, 450, 768, 819, 1200
BsaWI WCCGGW 2 cut(s) 293, 426
BsaXI ACNNNNNCTCC 2 cut(s) 659, 689
Bsc4I CCNNNNNNNGG 4 cut(s) 306, 571, 589, 655
Bse118I RCCGGY 1 cut(s) 377
Bse1I ACTGG 3 cut(s) 334, 1068, 1133
Bse8I GATNNNNATC 3 cut(s) 125, 289, 350
BseAI TCCGGA 2 cut(s) 293, 426
BseBI CCWGG 4 cut(s) 452, 566, 650, 769
BseDI CCNNGG 8 cut(s) 10, 73, 300, 363, 450, 768, 819, 1200
BseGI GGATG 1 cut(s) 240
BseJI GATNNNNATC 3 cut(s) 125, 289, 350
BseLI CCNNNNNNNGG 4 cut(s) 306, 571, 589, 655
BseMII CTCAG 5 cut(s) 76, 131, 281, 834, 1205
BseNI ACTGG 3 cut(s) 334, 1068, 1133
BseRI GAGGAG 5 cut(s) 50, 575, 823, 868, 898
BseXI GCAGC 3 cut(s) 1015, 1155, 1174
Bsh1236I CGCG 3 cut(s) 75, 158, 558
Bsh1285I CGRYCG 2 cut(s) 311, 325
BshFI GGCC 8 cut(s) 78, 132, 222, 377, 465, 648, 767, 818
BsiEI CGRYCG 2 cut(s) 311, 325
BsiHKAI GWGCWC 1 cut(s) 48
BsiHKCI CYCGRG 2 cut(s) 11, 301
BsiSI CCGG 4 cut(s) 294, 378, 427, 589
BslFI GGGAC 2 cut(s) 433, 1195
BslI CCNNNNNNNGG 4 cut(s) 306, 571, 589, 655
BsmAI GTCTC 3 cut(s) 20, 165, 197
BsmBI CGTCTC 2 cut(s) 20, 165
BsmFI GGGAC 2 cut(s) 433, 1195
BsmI GAATGC 1 cut(s) 902
BsnI GGCC 8 cut(s) 78, 132, 222, 377, 465, 648, 767, 818
Bso31I GGTCTC 1 cut(s) 197
BsoBI CYCGRG 2 cut(s) 11, 301
Bsp1286I GDGCHC 2 cut(s) 48, 1208
Bsp13I TCCGGA 2 cut(s) 293, 426
Bsp143I GATC 9 cut(s) 17, 50, 120, 284, 290, 322, 351, 406, 985
BspANI GGCC 8 cut(s) 78, 132, 222, 377, 465, 648, 767, 818
BspCNI CTCAG 5 cut(s) 75, 130, 280, 835, 1204
BspEI TCCGGA 2 cut(s) 293, 426
BspFNI CGCG 3 cut(s) 75, 158, 558
BspLI GGNNCC 5 cut(s) 8, 292, 298, 329, 1066
BspPI GGATC 5 cut(s) 115, 285, 292, 298, 414
BspTNI GGTCTC 1 cut(s) 197
BsrFI RCCGGY 1 cut(s) 377
BsrI ACTGG 3 cut(s) 334, 1068, 1133
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 8 cut(s) 10, 73, 300, 363, 450, 768, 819, 1200
BssMI GATC 9 cut(s) 17, 50, 120, 284, 290, 322, 351, 406, 985
BssNI GRCGYC 2 cut(s) 29, 150
BssT1I CCWWGG 2 cut(s) 363, 1200
Bst2UI CCWGG 4 cut(s) 452, 566, 650, 769
Bst4CI ACNGT 2 cut(s) 202, 550
Bst6I CTCTTC 2 cut(s) 825, 1025
BstACI GRCGYC 2 cut(s) 29, 150
BstC8I GCNNGC 2 cut(s) 36, 379
BstDEI CTNAG 6 cut(s) 62, 117, 267, 843, 860, 1191
BstDSI CCRYGG 2 cut(s) 73, 819
BstENI CCTNNNNNAGG 1 cut(s) 653
BstF5I GGATG 1 cut(s) 240
BstFNI CGCG 3 cut(s) 75, 158, 558
BstH2I RGCGCY 1 cut(s) 1108
BstHHI GCGC 1 cut(s) 1107
BstKTI GATC 9 cut(s) 20, 53, 123, 287, 293, 325, 354, 409, 988
BstMAI GTCTC 3 cut(s) 20, 165, 197
BstMBI GATC 9 cut(s) 17, 50, 120, 284, 290, 322, 351, 406, 985
BstMCI CGRYCG 2 cut(s) 311, 325
BstNI CCWGG 4 cut(s) 452, 566, 650, 769
BstNSI RCATGY 1 cut(s) 1124
BstSCI CCNGG 5 cut(s) 450, 564, 588, 648, 767
BstUI CGCG 3 cut(s) 75, 158, 558
BstV1I GCAGC 3 cut(s) 1015, 1155, 1174
BstV2I GAAGAC 3 cut(s) 61, 145, 153
BstX2I RGATCY 3 cut(s) 120, 290, 351
BstYI RGATCY 3 cut(s) 120, 290, 351
BsuRI GGCC 8 cut(s) 78, 132, 222, 377, 465, 648, 767, 818
BtgI CCRYGG 2 cut(s) 73, 819
BtrI CACGTC 1 cut(s) 640
BtsCI GGATG 1 cut(s) 240
BtsI GCAGTG 1 cut(s) 1157
BtsIMutI CAGTG 5 cut(s) 341, 1075, 1140, 1157, 1224
Cac8I GCNNGC 2 cut(s) 36, 379
CfoI GCGC 1 cut(s) 1107
Cfr10I RCCGGY 1 cut(s) 377
Cfr13I GGNCC 5 cut(s) 220, 296, 478, 646, 1064
Cfr42I CCGCGG 1 cut(s) 76
CseI GACGC 1 cut(s) 147
CsiI ACCWGGT 1 cut(s) 564
CviAII CATG 3 cut(s) 475, 976, 1121
DdeI CTNAG 6 cut(s) 62, 117, 267, 843, 860, 1191
DpnI GATC 9 cut(s) 19, 52, 122, 286, 292, 324, 353, 408, 987
DpnII GATC 9 cut(s) 17, 50, 120, 284, 290, 322, 351, 406, 985
DrdI GACNNNNNNGTC 1 cut(s) 303
DseDI GACNNNNNNGTC 1 cut(s) 303
EaeI YGGCCR 4 cut(s) 76, 375, 463, 765
Eam1104I CTCTTC 2 cut(s) 825, 1025
EarI CTCTTC 2 cut(s) 825, 1025
EciI GGCGGA 3 cut(s) 56, 680, 806
Ecl136II GAGCTC 1 cut(s) 46
Eco130I CCWWGG 2 cut(s) 363, 1200
Eco24I GRGCYC 2 cut(s) 48, 1208
Eco31I GGTCTC 1 cut(s) 197
Eco47I GGWCC 3 cut(s) 296, 478, 1064
Eco53kI GAGCTC 1 cut(s) 46
Eco57I CTGAAG 3 cut(s) 455, 849, 1200
Eco88I CYCGRG 2 cut(s) 11, 301
EcoICRI GAGCTC 1 cut(s) 46
EcoNI CCTNNNNNAGG 1 cut(s) 653
EcoO109I RGGNCCY 1 cut(s) 646
EcoRII CCWGG 4 cut(s) 450, 564, 648, 767
EcoT14I CCWWGG 2 cut(s) 363, 1200
EcoT38I GRGCYC 2 cut(s) 48, 1208
ErhI CCWWGG 2 cut(s) 363, 1200
Esp3I CGTCTC 2 cut(s) 20, 165
FaeI CATG 3 cut(s) 478, 979, 1124
FalI AAGNNNNNCTT 2 cut(s) 884, 916
FaqI GGGAC 2 cut(s) 433, 1195
FatI CATG 3 cut(s) 474, 975, 1120
FauNDI CATATG 1 cut(s) 22
FokI GGATG 1 cut(s) 227
FriOI GRGCYC 2 cut(s) 48, 1208
FspBI CTAG 2 cut(s) 488, 921
GlaI GCGC 1 cut(s) 1106
GsuI CTGGAG 1 cut(s) 1032
HaeII RGCGCY 1 cut(s) 1108
HaeIII GGCC 8 cut(s) 78, 132, 222, 377, 465, 648, 767, 818
HapII CCGG 4 cut(s) 294, 378, 427, 589
HgaI GACGC 1 cut(s) 147
HhaI GCGC 1 cut(s) 1107
Hin1I GRCGYC 2 cut(s) 29, 150
Hin1II CATG 3 cut(s) 478, 979, 1124
Hin6I GCGC 1 cut(s) 1105
HinP1I GCGC 1 cut(s) 1105
HincII GTYRAC 2 cut(s) 553, 562
HindII GTYRAC 2 cut(s) 553, 562
HpaII CCGG 4 cut(s) 294, 378, 427, 589
HphI GGTGA 5 cut(s) 220, 466, 589, 700, 766
Hpy166II GTNNAC 5 cut(s) 457, 553, 562, 580, 1058
Hpy188III TCNNGA 9 cut(s) 13, 196, 288, 294, 394, 427, 523, 1049, 1167
Hpy8I GTNNAC 5 cut(s) 457, 553, 562, 580, 1058
Hpy99I CGWCG 3 cut(s) 34, 217, 536
HpyAV CCTTC 6 cut(s) 143, 244, 751, 886, 1094, 1224
HpyCH4III ACNGT 2 cut(s) 202, 550
HpyCH4IV ACGT 4 cut(s) 29, 150, 639, 1177
HpyF3I CTNAG 6 cut(s) 62, 117, 267, 843, 860, 1191
HpySE526I ACGT 4 cut(s) 29, 150, 639, 1177
Hsp92I GRCGYC 2 cut(s) 29, 150
Hsp92II CATG 3 cut(s) 478, 979, 1124
HspAI GCGC 1 cut(s) 1105
Kpn2I TCCGGA 2 cut(s) 293, 426
KroI GCCGGC 1 cut(s) 377
KroNI GCCGGC 1 cut(s) 379
KspI CCGCGG 1 cut(s) 76
Kzo9I GATC 9 cut(s) 17, 50, 120, 284, 290, 322, 351, 406, 985
LmnI GCTCC 5 cut(s) 6, 43, 51, 63, 1015
Lsp1109I GCAGC 3 cut(s) 1015, 1155, 1174
LweI GCATC 2 cut(s) 280, 938
MabI ACCWGGT 1 cut(s) 564
MaeI CTAG 2 cut(s) 488, 921
MaeII ACGT 4 cut(s) 29, 150, 639, 1177
MaeIII GTNAC 3 cut(s) 940, 1128, 1219
MalI GATC 9 cut(s) 19, 52, 122, 286, 292, 324, 353, 408, 987
MboI GATC 9 cut(s) 17, 50, 120, 284, 290, 322, 351, 406, 985
MflI RGATCY 3 cut(s) 120, 290, 351
MhlI GDGCHC 2 cut(s) 48, 1208
MlsI TGGCCA 1 cut(s) 767
MluNI TGGCCA 1 cut(s) 767
MlyI GAGTC 5 cut(s) 75, 245, 455, 632, 1063
MmeI TCCRAC 2 cut(s) 600, 777
Mox20I TGGCCA 1 cut(s) 767
MroI TCCGGA 2 cut(s) 293, 426
MroNI GCCGGC 1 cut(s) 377
MroXI GAANNNNTTC 1 cut(s) 98
MscI TGGCCA 1 cut(s) 767
MseI TTAA 1 cut(s) 708
Msp20I TGGCCA 1 cut(s) 767
MspA1I CMGCKG 5 cut(s) 38, 75, 175, 412, 1006
MspI CCGG 4 cut(s) 294, 378, 427, 589
MspR9I CCNGG 5 cut(s) 452, 566, 590, 650, 769
Mva1269I GAATGC 1 cut(s) 902
MvaI CCWGG 4 cut(s) 452, 566, 650, 769
MvnI CGCG 3 cut(s) 75, 158, 558
NaeI GCCGGC 1 cut(s) 379
NciI CCSGG 1 cut(s) 590
NdeI CATATG 1 cut(s) 22
NdeII GATC 9 cut(s) 17, 50, 120, 284, 290, 322, 351, 406, 985
NgoMIV GCCGGC 1 cut(s) 377
NlaIII CATG 3 cut(s) 478, 979, 1124
NlaIV GGNNCC 5 cut(s) 8, 292, 298, 329, 1066
NmuCI GTSAC 1 cut(s) 1219
NspI RCATGY 1 cut(s) 1124
PciI ACATGT 1 cut(s) 1120
PctI GAATGC 1 cut(s) 902
PdiI GCCGGC 1 cut(s) 379
PdmI GAANNNNTTC 1 cut(s) 98
PfeI GAWTC 6 cut(s) 169, 415, 430, 516, 782, 866
PfoI TCCNGGA 1 cut(s) 588
Ple19I CGATCG 1 cut(s) 325
PleI GAGTC 5 cut(s) 74, 245, 454, 631, 1062
PpsI GAGTC 5 cut(s) 74, 245, 454, 631, 1062
PscI ACATGT 1 cut(s) 1120
Psp124BI GAGCTC 1 cut(s) 48
Psp6I CCWGG 4 cut(s) 450, 564, 648, 767
PspGI CCWGG 4 cut(s) 450, 564, 648, 767
PspN4I GGNNCC 5 cut(s) 8, 292, 298, 329, 1066
PspPI GGNCC 5 cut(s) 220, 296, 478, 646, 1064
PsuI RGATCY 3 cut(s) 120, 290, 351
PvuI CGATCG 1 cut(s) 325
PvuII CAGCTG 2 cut(s) 412, 1006
SacI GAGCTC 1 cut(s) 48
SacII CCGCGG 1 cut(s) 76
SaqAI TTAA 1 cut(s) 708
Sau3AI GATC 9 cut(s) 17, 50, 120, 284, 290, 322, 351, 406, 985
Sau96I GGNCC 5 cut(s) 220, 296, 478, 646, 1064
SchI GAGTC 5 cut(s) 75, 245, 455, 632, 1063
ScrFI CCNGG 5 cut(s) 452, 566, 590, 650, 769
SduI GDGCHC 2 cut(s) 48, 1208
SexAI ACCWGGT 1 cut(s) 564
SfaNI GCATC 2 cut(s) 280, 938
Sfr303I CCGCGG 1 cut(s) 76
SgrBI CCGCGG 1 cut(s) 76
SinI GGWCC 3 cut(s) 296, 478, 1064
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
SspMI CTAG 2 cut(s) 488, 921
SstI GAGCTC 1 cut(s) 48
StyD4I CCNGG 5 cut(s) 450, 564, 588, 648, 767
StyI CCWWGG 2 cut(s) 363, 1200
TaaI ACNGT 2 cut(s) 202, 550
TaiI ACGT 4 cut(s) 32, 153, 642, 1180
TaqI TCGA 3 cut(s) 393, 444, 1094
TaqII GACCGA 1 cut(s) 297
TfiI GAWTC 6 cut(s) 169, 415, 430, 516, 782, 866
Tru1I TTAA 1 cut(s) 708
Tru9I TTAA 1 cut(s) 708
TscAI CASTG 5 cut(s) 341, 1075, 1140, 1164, 1224
TseFI GTSAC 1 cut(s) 1219
TseI GCWGC 3 cut(s) 1003, 1143, 1187
Tsp45I GTSAC 1 cut(s) 1219
TspDTI ATGAA 3 cut(s) 194, 226, 1076
TspGWI ACGGA 1 cut(s) 230
TspRI CASTG 5 cut(s) 341, 1075, 1140, 1164, 1224
VpaK11BI GGWCC 3 cut(s) 296, 478, 1064
XagI CCTNNNNNAGG 1 cut(s) 653
XceI RCATGY 1 cut(s) 1124
XcmI CCANNNNNNNNNTGG 1 cut(s) 370
XmnI GAANNNNTTC 1 cut(s) 98
XspI CTAG 2 cut(s) 488, 921
ZraI GACGTC 2 cut(s) 30, 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.