Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0012425

Physical Location & Seq

Genomic Coordinates Forward (+)

23944387 .. 23946613

Gene Structure 2227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1146800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGATGGAGGCCGAAGAAGTCTTCGCATCGCTCGCAATTCCGTTGATGAAGCTTGTAGGTCTGAAGACGGCGGAGATGTCGACGGAGGGCCGGTTCTCCACCATCATCATCCAGACAAACACCGATTCTCTGCATCAGAATTTTGGATCCGACTCGGGGGAATTCGGATCGTCGGATCGGAACCGCCGTTCAGCGAAGGAAGAAATCTACGCCGCTAAAGCCGCCGTGGCAGGGAGGCTCGTGATGGAGAAGCAAAAAGATCAGCTGGTTCAACTGGTCGGAATCCTGAAGCACATCGAGACTCAAGTCAACGCTCGCCAGAGCCACATGGTCAAAACCCTCACTCACCGCCGTCTCTACATCCAGAAGTTCTTCCGCAGAGCCGTCGATTATCTATCCTCCGTTGACCGCGTTGACCACCGGACCTTCCAGATTGCAATCCTGAAGCTCCTCCGGGCGGTGTTTGACGAAATGGGCGCCGTGCTGGGGTCAGTAGAGACCGATGTGGATGATCTTCTGGTGGATTTGGGTGAGCAGATGTGCGATCCGATGGTGGAGTACGTGGAGGGGGTTAAGGCTGATTTGAGTGAGGGGAGTTGCGTAAGGTTGGTGGGGTTGGTGAAGGAGATGGCTATGGAAGCGGGAGAGACGAGGGTTGAGATGGAGGCAGCGAGGAGTAGGGCCGCGGTTGCAGAGGCTAAGAGAGTTGAGGCTTTGAGTAGGCTCCGGGAAGCAGAGAACAATGTGTGCAAGTTGAAGGAGTGCCTCAAGTTTTTGCCTGAGCCTCATAAGGCATCTACCAAAGTAAAGCCTTTTGCCCAGCAGATGTTTTTGAGCATGGAGAAGGAAAAAGCAAACGATGAGGTGCTGCTGTGGGAGATATTGGAAAAGAAGAGAGAGTACCACACACCACAGAGCCCATTTGGACCCAAAGAGCTTCTTTCCTTTGAGCCAAATAATAAGCGCCAAAAATCAACCAAGGTAAAACCAGCAGCAGTAACTTCTACGTATTCACTGCGGTCAGATACAACGCTTTCGGATGCTCGGATTCCCTTGGGCTCATCTCCTTCGGTAACAATTCAGCGAGCTGCTTCTCTCAAGCTCAAGCAAATGAGCTCTCCGAAAATGCGTCGCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

380

Amino Acids

42.53

Weight (kDa)

8.96

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61865
fragaria_vesca	FvH4_5g09640 FvH4_5g09640
malus_domestica	MD14G1146800.v1.1
prunus_persica	Prupe.5G140800_v2.0.a1 Prupe.5G140800_v2.0.a1 Prupe.5G140800_v2.0.a1 Prupe.5G140800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0188601
rosa_laevigata	RLG00000004680 RLG00000018903
rosa_roxburghii	Rroxscaffold_2G00117180 Rroxscaffold_3G00266220
rosa_rugosa	Rorug06G0491500
rosa_samantha	Rh7AG096500 Rh7BG098400 Rh7CG099300 Rh7DG098500
rosa_wichuraiana	Rw7G008340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	476
AccI	GTMKAC	1 cut(s)	80
AccII	CGCG	3 cut(s)	411, 686, 1134
AclWI	GGATC	5 cut(s)	141, 154, 175, 183, 539
AcsI	RAATTY	2 cut(s)	139, 161
AcuI	CTGAAG	3 cut(s)	83, 308, 464
AcyI	GRCGYC	1 cut(s)	477
AfaI	GTAC	2 cut(s)	560, 902
AfiI	CCNNNNNNNGG	4 cut(s)	156, 231, 457, 486
AgsI	TTSAA	2 cut(s)	272, 757
AloI	GAACNNNNNNTCC	4 cut(s)	77, 109, 172, 204
AluBI	AGCT	7 cut(s)	52, 265, 448, 937, 1088, 1102, 1116
AluI	AGCT	7 cut(s)	52, 265, 448, 937, 1088, 1102, 1116
Alw21I	GWGCWC	1 cut(s)	1118
Alw26I	GTCTC	4 cut(s)	293, 359, 491, 641
AlwI	GGATC	5 cut(s)	141, 154, 175, 183, 539
Ama87I	CYCGRG	1 cut(s)	154
AoxI	GGCC	3 cut(s)	9, 88, 681
ApeKI	GCWGC	4 cut(s)	668, 868, 992, 1088
ApoI	RAATTY	2 cut(s)	139, 161
Asp700I	GAANNNNTTC	1 cut(s)	371
AspLEI	GCGC	3 cut(s)	479, 966, 1136
AspS9I	GGNCC	4 cut(s)	88, 423, 681, 926
AsuC2I	CCSGG	2 cut(s)	455, 728
AsuHPI	GGTGA	3 cut(s)	338, 542, 631
AvaI	CYCGRG	1 cut(s)	154
AvaII	GGWCC	2 cut(s)	423, 926
BamHI	GGATCC	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	476
BanII	GRGCYC	3 cut(s)	920, 1061, 1118
BarI	GAAGNNNNNNTAC	2 cut(s)	884, 916
BauI	CACGAG	1 cut(s)	239
BbsI	GAAGAC	2 cut(s)	13, 71
Bbv12I	GWGCWC	1 cut(s)	1118
BbvI	GCAGC	4 cut(s)	680, 855, 1004, 1075
BccI	CCATC	5 cut(s)	110, 238, 544, 622, 655
BceAI	ACGGC	6 cut(s)	84, 171, 209, 336, 368, 464
BcgI	CGANNNNNNTGC	2 cut(s)	367, 401
BcnI	CCSGG	2 cut(s)	455, 728
BcoDI	GTCTC	4 cut(s)	293, 359, 491, 641
BfoI	RGCGCY	2 cut(s)	480, 967
BglI	GCCNNNNNGGC	1 cut(s)	227
BisI	GCNGC	7 cut(s)	213, 222, 669, 684, 869, 993, 1089
BlsI	GCNGC	7 cut(s)	214, 223, 670, 685, 870, 994, 1090
Bme1390I	CCNGG	2 cut(s)	455, 728
Bme18I	GGWCC	2 cut(s)	423, 926
BmeT110I	CYCGRG	1 cut(s)	154
BmgT120I	GGNCC	4 cut(s)	88, 423, 681, 926
BmiI	GGNNCC	5 cut(s)	148, 182, 478, 725, 928
BmrFI	CCNGG	2 cut(s)	455, 728
BmsI	GCATC	4 cut(s)	35, 142, 803, 1030
BoxI	GACNNNNGTC	1 cut(s)	305
BpiI	GAAGAC	2 cut(s)	13, 71
Bpu10I	CCTNAGC	1 cut(s)	780
BpuEI	CTTGAG	4 cut(s)	288, 752, 1082, 1088
BpuMI	CCSGG	2 cut(s)	455, 728
BsaAI	YACGTR	2 cut(s)	562, 1008
BsaBI	GATNNNNATC	1 cut(s)	437
BsaHI	GRCGYC	1 cut(s)	477
BsaI	GGTCTC	1 cut(s)	491
BsaJI	CCNNGG	4 cut(s)	225, 684, 978, 1053
BsaWI	WCCGGW	1 cut(s)	420
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bsc4I	CCNNNNNNNGG	4 cut(s)	156, 231, 457, 486
Bse118I	RCCGGY	1 cut(s)	90
Bse1I	ACTGG	1 cut(s)	279
Bse8I	GATNNNNATC	1 cut(s)	437
BseDI	CCNNGG	4 cut(s)	225, 684, 978, 1053
BseGI	GGATG	4 cut(s)	108, 360, 514, 1045
BseJI	GATNNNNATC	1 cut(s)	437
BseLI	CCNNNNNNNGG	4 cut(s)	156, 231, 457, 486
BseMII	CTCAG	1 cut(s)	771
BseNI	ACTGG	1 cut(s)	279
BseRI	GAGGAG	2 cut(s)	440, 688
BseXI	GCAGC	4 cut(s)	680, 855, 1004, 1075
BseYI	CCCAGC	2 cut(s)	484, 819
Bsh1236I	CGCG	3 cut(s)	411, 686, 1134
BshFI	GGCC	3 cut(s)	11, 90, 683
BshNI	GGYRCC	1 cut(s)	476
BsiHKAI	GWGCWC	1 cut(s)	1118
BsiHKCI	CYCGRG	1 cut(s)	154
BsiSI	CCGG	4 cut(s)	91, 421, 454, 727
BslI	CCNNNNNNNGG	4 cut(s)	156, 231, 457, 486
BsmAI	GTCTC	4 cut(s)	293, 359, 491, 641
BsmBI	CGTCTC	2 cut(s)	359, 641
BsnI	GGCC	3 cut(s)	11, 90, 683
Bso31I	GGTCTC	1 cut(s)	491
BsoBI	CYCGRG	1 cut(s)	154
Bsp1286I	GDGCHC	3 cut(s)	920, 1061, 1118
Bsp143I	GATC	6 cut(s)	146, 167, 175, 259, 511, 544
BspANI	GGCC	3 cut(s)	11, 90, 683
BspCNI	CTCAG	1 cut(s)	772
BspFNI	CGCG	3 cut(s)	411, 686, 1134
BspLI	GGNNCC	5 cut(s)	148, 182, 478, 725, 928
BspPI	GGATC	5 cut(s)	141, 154, 175, 183, 539
BspT107I	GGYRCC	1 cut(s)	476
BspTNI	GGTCTC	1 cut(s)	491
BsrFI	RCCGGY	1 cut(s)	90
BsrI	ACTGG	1 cut(s)	279
BssAI	RCCGGY	1 cut(s)	90
BssECI	CCNNGG	4 cut(s)	225, 684, 978, 1053
BssMI	GATC	6 cut(s)	146, 167, 175, 259, 511, 544
BssNI	GRCGYC	1 cut(s)	477
BssSI	CACGAG	1 cut(s)	239
BssT1I	CCWWGG	2 cut(s)	978, 1053
Bst2BI	CACGAG	1 cut(s)	239
Bst6I	CTCTTC	1 cut(s)	887
BstACI	GRCGYC	1 cut(s)	477
BstBAI	YACGTR	2 cut(s)	562, 1008
BstC8I	GCNNGC	3 cut(s)	33, 316, 1086
BstDEI	CTNAG	2 cut(s)	699, 780
BstDSI	CCRYGG	2 cut(s)	225, 684
BstF5I	GGATG	4 cut(s)	108, 360, 514, 1045
BstFNI	CGCG	3 cut(s)	411, 686, 1134
BstH2I	RGCGCY	2 cut(s)	480, 967
BstHHI	GCGC	3 cut(s)	479, 966, 1136
BstKTI	GATC	6 cut(s)	149, 170, 178, 262, 514, 547
BstMAI	GTCTC	4 cut(s)	293, 359, 491, 641
BstMBI	GATC	6 cut(s)	146, 167, 175, 259, 511, 544
BstMWI	GCNNNNNNNGC	6 cut(s)	32, 218, 221, 227, 638, 689
BstPAI	GACNNNNGTC	1 cut(s)	305
BstSCI	CCNGG	2 cut(s)	453, 726
BstSNI	TACGTA	1 cut(s)	1008
BstUI	CGCG	3 cut(s)	411, 686, 1134
BstV1I	GCAGC	4 cut(s)	680, 855, 1004, 1075
BstV2I	GAAGAC	2 cut(s)	13, 71
BstX2I	RGATCY	1 cut(s)	146
BstYI	RGATCY	1 cut(s)	146
BsuRI	GGCC	3 cut(s)	11, 90, 683
BtgI	CCRYGG	2 cut(s)	225, 684
BtgZI	GCGATG	1 cut(s)	12
BtsCI	GGATG	4 cut(s)	108, 360, 514, 1045
BtsI	GCAGTG	1 cut(s)	1013
BtsIMutI	CAGTG	1 cut(s)	1013
Cac8I	GCNNGC	3 cut(s)	33, 316, 1086
CfoI	GCGC	3 cut(s)	479, 966, 1136
Cfr10I	RCCGGY	1 cut(s)	90
Cfr13I	GGNCC	4 cut(s)	88, 423, 681, 926
Cfr42I	CCGCGG	1 cut(s)	687
CseI	GACGC	1 cut(s)	1118
Csp6I	GTAC	2 cut(s)	559, 901
CviAII	CATG	2 cut(s)	328, 838
CviQI	GTAC	2 cut(s)	559, 901
DdeI	CTNAG	2 cut(s)	699, 780
DinI	GGCGCC	1 cut(s)	478
DpnI	GATC	6 cut(s)	148, 169, 177, 261, 513, 546
DpnII	GATC	6 cut(s)	146, 167, 175, 259, 511, 544
Eam1104I	CTCTTC	1 cut(s)	887
EarI	CTCTTC	1 cut(s)	887
EciI	GGCGGA	1 cut(s)	86
Ecl136II	GAGCTC	1 cut(s)	1116
Eco105I	TACGTA	1 cut(s)	1008
Eco130I	CCWWGG	2 cut(s)	978, 1053
Eco24I	GRGCYC	3 cut(s)	920, 1061, 1118
Eco31I	GGTCTC	1 cut(s)	491
Eco47I	GGWCC	2 cut(s)	423, 926
Eco53kI	GAGCTC	1 cut(s)	1116
Eco57I	CTGAAG	3 cut(s)	83, 308, 464
Eco88I	CYCGRG	1 cut(s)	154
EcoICRI	GAGCTC	1 cut(s)	1116
EcoRI	GAATTC	1 cut(s)	161
EcoT14I	CCWWGG	2 cut(s)	978, 1053
EcoT38I	GRGCYC	3 cut(s)	920, 1061, 1118
EgeI	GGCGCC	1 cut(s)	478
EheI	GGCGCC	1 cut(s)	478
ErhI	CCWWGG	2 cut(s)	978, 1053
Esp3I	CGTCTC	2 cut(s)	359, 641
FaeI	CATG	2 cut(s)	331, 841
FaiI	YATR	4 cut(s)	329, 635, 789, 839
FalI	AAGNNNNNCTT	2 cut(s)	924, 956
FatI	CATG	2 cut(s)	327, 837
FauI	CCCGC	1 cut(s)	634
FblI	GTMKAC	1 cut(s)	80
Fnu4HI	GCNGC	7 cut(s)	213, 222, 669, 684, 869, 993, 1089
FokI	GGATG	4 cut(s)	95, 347, 521, 1052
FriOI	GRGCYC	3 cut(s)	920, 1061, 1118
Fsp4HI	GCNGC	7 cut(s)	213, 222, 669, 684, 869, 993, 1089
GlaI	GCGC	3 cut(s)	478, 965, 1135
GluI	GCNGC	7 cut(s)	213, 222, 669, 684, 869, 993, 1089
GsaI	CCCAGC	2 cut(s)	488, 823
HaeII	RGCGCY	2 cut(s)	480, 967
HaeIII	GGCC	3 cut(s)	11, 90, 683
HapII	CCGG	4 cut(s)	91, 421, 454, 727
HgaI	GACGC	1 cut(s)	1118
HhaI	GCGC	3 cut(s)	479, 966, 1136
Hin1I	GRCGYC	1 cut(s)	477
Hin1II	CATG	2 cut(s)	331, 841
Hin6I	GCGC	3 cut(s)	477, 964, 1134
HinP1I	GCGC	3 cut(s)	477, 964, 1134
HincII	GTYRAC	4 cut(s)	81, 310, 406, 415
HindII	GTYRAC	4 cut(s)	81, 310, 406, 415
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	5 cut(s)	125, 152, 282, 301, 1048
HpaII	CCGG	4 cut(s)	91, 421, 454, 727
HphI	GGTGA	3 cut(s)	338, 542, 631
Hpy166II	GTNNAC	4 cut(s)	81, 310, 406, 415
Hpy188III	TCNNGA	7 cut(s)	112, 241, 286, 298, 364, 430, 442
Hpy8I	GTNNAC	4 cut(s)	81, 310, 406, 415
Hpy99I	CGWCG	4 cut(s)	85, 175, 389, 1134
HpyAV	CCTTC	6 cut(s)	190, 436, 616, 751, 838, 1077
HpyCH4IV	ACGT	2 cut(s)	561, 1007
HpyCH4V	TGCA	4 cut(s)	133, 437, 692, 750
HpyF10VI	GCNNNNNNNGC	6 cut(s)	32, 218, 221, 227, 638, 689
HpyF3I	CTNAG	2 cut(s)	699, 780
HpySE526I	ACGT	2 cut(s)	561, 1007
Hsp92I	GRCGYC	1 cut(s)	477
Hsp92II	CATG	2 cut(s)	331, 841
HspAI	GCGC	3 cut(s)	477, 964, 1134
KasI	GGCGCC	1 cut(s)	476
KspI	CCGCGG	1 cut(s)	687
Kzo9I	GATC	6 cut(s)	146, 167, 175, 259, 511, 544
LmnI	GCTCC	2 cut(s)	453, 729
Lsp1109I	GCAGC	4 cut(s)	680, 855, 1004, 1075
LweI	GCATC	4 cut(s)	35, 142, 803, 1030
MaeII	ACGT	2 cut(s)	561, 1007
MaeIII	GTNAC	2 cut(s)	997, 1072
MalI	GATC	6 cut(s)	148, 169, 177, 261, 513, 546
MboI	GATC	6 cut(s)	146, 167, 175, 259, 511, 544
MboII	GAAGA	7 cut(s)	13, 26, 76, 212, 364, 506, 904
MflI	RGATCY	1 cut(s)	146
MhlI	GDGCHC	3 cut(s)	920, 1061, 1118
MluCI	AATT	4 cut(s)	36, 139, 161, 1077
Mly113I	GGCGCC	1 cut(s)	477
MlyI	GAGTC	2 cut(s)	146, 295
MmeI	TCCRAC	3 cut(s)	153, 174, 259
MroXI	GAANNNNTTC	1 cut(s)	371
MseI	TTAA	1 cut(s)	573
MspA1I	CMGCKG	2 cut(s)	265, 686
MspI	CCGG	4 cut(s)	91, 421, 454, 727
MspR9I	CCNGG	2 cut(s)	455, 728
MvnI	CGCG	3 cut(s)	411, 686, 1134
MwoI	GCNNNNNNNGC	6 cut(s)	32, 218, 221, 227, 638, 689
NarI	GGCGCC	1 cut(s)	477
NciI	CCSGG	2 cut(s)	455, 728
NdeII	GATC	6 cut(s)	146, 167, 175, 259, 511, 544
NlaIII	CATG	2 cut(s)	331, 841
NlaIV	GGNNCC	5 cut(s)	148, 182, 478, 725, 928
PcsI	WCGNNNNNNNCGW	1 cut(s)	184
PdmI	GAANNNNTTC	1 cut(s)	371
PfeI	GAWTC	3 cut(s)	125, 282, 1048
PfoI	TCCNGGA	1 cut(s)	726
PkrI	GCNGC	7 cut(s)	214, 223, 670, 685, 870, 994, 1090
PleI	GAGTC	2 cut(s)	146, 295
PluTI	GGCGCC	1 cut(s)	480
PpsI	GAGTC	2 cut(s)	146, 295
Ppu21I	YACGTR	2 cut(s)	562, 1008
PshAI	GACNNNNGTC	1 cut(s)	305
Psp124BI	GAGCTC	1 cut(s)	1118
PspFI	CCCAGC	2 cut(s)	484, 819
PspN4I	GGNNCC	5 cut(s)	148, 182, 478, 725, 928
PspPI	GGNCC	4 cut(s)	88, 423, 681, 926
PsuI	RGATCY	1 cut(s)	146
PvuII	CAGCTG	1 cut(s)	265
RsaI	GTAC	2 cut(s)	560, 902
RsaNI	GTAC	2 cut(s)	559, 901
SacI	GAGCTC	1 cut(s)	1118
SacII	CCGCGG	1 cut(s)	687
SalI	GTCGAC	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	573
SatI	GCNGC	7 cut(s)	213, 222, 669, 684, 869, 993, 1089
Sau3AI	GATC	6 cut(s)	146, 167, 175, 259, 511, 544
Sau96I	GGNCC	4 cut(s)	88, 423, 681, 926
SchI	GAGTC	2 cut(s)	146, 295
ScrFI	CCNGG	2 cut(s)	455, 728
SduI	GDGCHC	3 cut(s)	920, 1061, 1118
SfaNI	GCATC	4 cut(s)	35, 142, 803, 1030
SfoI	GGCGCC	1 cut(s)	478
Sfr303I	CCGCGG	1 cut(s)	687
SgrBI	CCGCGG	1 cut(s)	687
SinI	GGWCC	2 cut(s)	423, 926
SmlI	CTYRAG	4 cut(s)	303, 767, 1097, 1103
SmoI	CTYRAG	4 cut(s)	303, 767, 1097, 1103
SnaBI	TACGTA	1 cut(s)	1008
Sse9I	AATT	4 cut(s)	36, 139, 161, 1077
SspDI	GGCGCC	1 cut(s)	476
SstI	GAGCTC	1 cut(s)	1118
StyD4I	CCNGG	2 cut(s)	453, 726
StyI	CCWWGG	2 cut(s)	978, 1053
TaiI	ACGT	2 cut(s)	564, 1010
TaqI	TCGA	3 cut(s)	80, 297, 387
TaqII	GACCGA	1 cut(s)	515
TasI	AATT	4 cut(s)	36, 139, 161, 1077
TauI	GCSGC	3 cut(s)	215, 224, 686
TfiI	GAWTC	3 cut(s)	125, 282, 1048
Tru1I	TTAA	1 cut(s)	573
Tru9I	TTAA	1 cut(s)	573
TscAI	CASTG	1 cut(s)	1020
TseI	GCWGC	4 cut(s)	668, 868, 992, 1088
TspDTI	ATGAA	1 cut(s)	62
TspGWI	ACGGA	3 cut(s)	30, 98, 391
TspRI	CASTG	1 cut(s)	1020
VpaK11BI	GGWCC	2 cut(s)	423, 926
XapI	RAATTY	2 cut(s)	139, 161
XmiI	GTMKAC	1 cut(s)	80
XmnI	GAANNNNTTC	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.