Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010884

Physical Location & Seq

Genomic Coordinates Forward (+)

6556652 .. 6559675

Gene Structure 3024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g11560.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGTTTCTGCAGATGCTGCTCGGACTGTGGTCGGTATCATAGGGAACCTCATCTCATTATTTTTGTTCTTGTCGCCGGTTCCAACGTTTGTTAAAATATGGAAGAAAGGGTCAGTGGAGCAATACTCTCCAGTCCCCTACCTTGCAACCCTAATCAACTGCATGGCGTGGACCTTATACGGGTTACCCATCGTGCACCCGAATAGCACTCTGGTCTGGACCATAAACGGGTCGGGTACGATCATCGAAGTCGTCTACATCATCCTCTTCTTCATTTATTCCGACAAGAAAAAGAGGCTCATGGTGGTTCTGGTTGTGGCCTTGGAGATCATTTTCATTGGTGTTCTTACCCTTCTGGTTCTCACTTTGGCTCACACTCATACCAAGAGGTCCTTGATTGTGGGCATCGTATCCATTGCCTTCAACATCATGATGTATGCTTCACCATTGACTGTCATGAAATTAGTGATCACAACAAAAAGTGTGGAGTACATGCCATTTTTTCTCTCGTTTGCTTCCTTTGCCAATGGCGTTGCCTGGACTGCATACGCTCTCATCCGTTTTGACCCCTTCATCACGATTCCTAATGGCTTGGGCACAGTTTTTAGTTTAGCTCAGCTGATTCTGTATGCTACATACTACAAGTCAACTCAGCGGCAGATAGCAGAAAGGAAAGGCAGGGAGGTGAACTTGTCAGAGGTAACCATAGACGACGACCCCAAAAAGACTGCCAGCCGTGCTACTCATAATGGCCACGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009507 GO:0009536 GO:0009987 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

254

Amino Acids

28.09

Weight (kDa)

9.54

Isoelectric Point (pI)

32.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	10 - 98	4.5e-23	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	133 - 217	8.9e-23	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66770 AT4G10850
fragaria_vesca	FvH4_5g11560 FvH4_5g11560 FvH4_5g11560
malus_domestica	MD06G1112000.v1.1 MD14G1133400.v1.1
prunus_persica	Prupe.5G125100_v2.0.a1
pyrus_communis	pycom06g10500
rosa_chinensis	RchiOBHm_Chr7g0186191
rosa_laevigata	RLG00000004857
rosa_multiflora	Rmu_sc0009528.1_g000015
rosa_roxburghii	Rroxscaffold_3G00268330
rosa_rugosa	Rorug06G0472600 Rorug06G0472600
rosa_samantha	Rh7AG068800 Rh7BG084700 Rh7CG079300 Rh7DG079600
rosa_wichuraiana	Rw7G006620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	255
AciI	CCGC	1 cut(s)	655
AclI	AACGTT	1 cut(s)	86
AcoI	YGGCCR	1 cut(s)	751
AfaI	GTAC	2 cut(s)	238, 491
AfiI	CCNNNNNNNGG	2 cut(s)	180, 228
AgsI	TTSAA	1 cut(s)	424
AjnI	CCWGG	1 cut(s)	536
AluBI	AGCT	2 cut(s)	614, 619
AluI	AGCT	2 cut(s)	614, 619
Alw21I	GWGCWC	1 cut(s)	198
Alw44I	GTGCAC	1 cut(s)	194
AlwNI	CAGNNNCTG	1 cut(s)	17
AoxI	GGCC	2 cut(s)	318, 751
ApaLI	GTGCAC	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	17
AspS9I	GGNCC	3 cut(s)	171, 219, 390
AsuHPI	GGTGA	2 cut(s)	435, 697
AvaII	GGWCC	3 cut(s)	171, 219, 390
BaeGI	GKGCMC	2 cut(s)	198, 599
BalI	TGGCCA	1 cut(s)	753
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	1 cut(s)	197
BceAI	ACGGC	1 cut(s)	720
BciT130I	CCWGG	1 cut(s)	538
BciVI	GTATCC	1 cut(s)	421
BclI	TGATCA	1 cut(s)	468
BfmI	CTRYAG	1 cut(s)	9
BfuI	GTATCC	1 cut(s)	421
BisI	GCNGC	2 cut(s)	18, 656
BlpI	GCTNAGC	1 cut(s)	615
BlsI	GCNGC	2 cut(s)	19, 657
Bme1390I	CCNGG	1 cut(s)	538
Bme18I	GGWCC	3 cut(s)	171, 219, 390
BmgT120I	GGNCC	3 cut(s)	171, 219, 390
BmiI	GGNNCC	2 cut(s)	47, 81
BmrFI	CCNGG	1 cut(s)	538
BmsI	GCATC	2 cut(s)	4, 414
BoxI	GACNNNNGTC	1 cut(s)	29
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
BpmI	CTGGAG	1 cut(s)	114
Bpu1102I	GCTNAGC	1 cut(s)	615
BsaJI	CCNNGG	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 228
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	131
Bse3DI	GCAATG	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	538
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	2 cut(s)	261, 555
BseLI	CCNNNNNNNGG	2 cut(s)	180, 228
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	2 cut(s)	629, 665
BseNI	ACTGG	1 cut(s)	131
BseSI	GKGCMC	2 cut(s)	198, 599
BseXI	GCAGC	1 cut(s)	4
BshFI	GGCC	2 cut(s)	320, 753
BsiHKAI	GWGCWC	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	2 cut(s)	180, 228
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	2 cut(s)	320, 753
Bsp1286I	GDGCHC	2 cut(s)	198, 599
Bsp143I	GATC	3 cut(s)	240, 327, 468
Bsp1720I	GCTNAGC	1 cut(s)	615
BspACI	CCGC	1 cut(s)	655
BspANI	GGCC	2 cut(s)	320, 753
BspCNI	CTCAG	2 cut(s)	628, 664
BspHI	TCATGA	2 cut(s)	429, 456
BspLI	GGNNCC	2 cut(s)	47, 81
BspMAI	CTGCAG	1 cut(s)	13
BsrDI	GCAATG	1 cut(s)	414
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	3 cut(s)	240, 327, 468
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	1 cut(s)	538
Bst4CI	ACNGT	3 cut(s)	28, 454, 601
Bst6I	CTCTTC	1 cut(s)	272
BstAPI	GCANNNNNTGC	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	733
BstDEI	CTNAG	2 cut(s)	615, 651
BstEII	GGTNACC	2 cut(s)	183, 700
BstF5I	GGATG	2 cut(s)	261, 555
BstKTI	GATC	3 cut(s)	243, 330, 471
BstMBI	GATC	3 cut(s)	240, 327, 468
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 521, 542, 737
BstNI	CCWGG	1 cut(s)	538
BstNSI	RCATGY	1 cut(s)	496
BstPAI	GACNNNNGTC	1 cut(s)	29
BstPI	GGTNACC	2 cut(s)	183, 700
BstSCI	CCNGG	1 cut(s)	536
BstSFI	CTRYAG	1 cut(s)	9
BstSLI	GKGCMC	2 cut(s)	198, 599
BstV1I	GCAGC	1 cut(s)	4
BsuI	GTATCC	1 cut(s)	421
BsuRI	GGCC	2 cut(s)	320, 753
BtsCI	GGATG	2 cut(s)	261, 555
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	733
CaiI	CAGNNNCTG	1 cut(s)	17
CciI	TCATGA	2 cut(s)	429, 456
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	3 cut(s)	171, 219, 390
Csp6I	GTAC	2 cut(s)	237, 490
CspCI	CAANNNNNGTGG	2 cut(s)	465, 500
CviAII	CATG	5 cut(s)	163, 301, 430, 457, 493
CviJI	RGCY	8 cut(s)	298, 320, 371, 591, 614, 619, 735, 753
CviKI_1	RGCY	8 cut(s)	298, 320, 371, 591, 614, 619, 735, 753
CviQI	GTAC	2 cut(s)	237, 490
DdeI	CTNAG	2 cut(s)	615, 651
DpnI	GATC	3 cut(s)	242, 329, 470
DpnII	GATC	3 cut(s)	240, 327, 468
EaeI	YGGCCR	1 cut(s)	751
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Eco130I	CCWWGG	1 cut(s)	321
Eco47I	GGWCC	3 cut(s)	171, 219, 390
Eco91I	GGTNACC	2 cut(s)	183, 700
EcoO109I	RGGNCCY	1 cut(s)	390
EcoO65I	GGTNACC	2 cut(s)	183, 700
EcoRII	CCWGG	1 cut(s)	536
EcoT14I	CCWWGG	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	5 cut(s)	166, 304, 433, 460, 496
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	5 cut(s)	162, 300, 429, 456, 492
FbaI	TGATCA	1 cut(s)	468
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	2 cut(s)	18, 656
FokI	GGATG	2 cut(s)	248, 542
Fsp4HI	GCNGC	2 cut(s)	18, 656
GluI	GCNGC	2 cut(s)	18, 656
GsuI	CTGGAG	1 cut(s)	114
HaeIII	GGCC	2 cut(s)	320, 753
HapII	CCGG	1 cut(s)	77
Hin1II	CATG	5 cut(s)	166, 304, 433, 460, 496
HincII	GTYRAC	1 cut(s)	648
HindII	GTYRAC	1 cut(s)	648
HinfI	GANTC	2 cut(s)	580, 622
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	2 cut(s)	435, 697
Hpy166II	GTNNAC	5 cut(s)	171, 196, 256, 648, 688
Hpy188I	TCNGA	3 cut(s)	24, 283, 697
Hpy188III	TCNNGA	4 cut(s)	217, 430, 457, 577
Hpy8I	GTNNAC	5 cut(s)	171, 196, 256, 648, 688
Hpy99I	CGWCG	1 cut(s)	716
HpyAV	CCTTC	3 cut(s)	362, 430, 580
HpyCH4III	ACNGT	3 cut(s)	28, 454, 601
HpyCH4IV	ACGT	1 cut(s)	86
HpyCH4V	TGCA	5 cut(s)	11, 146, 162, 196, 545
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 521, 542, 737
HpyF3I	CTNAG	2 cut(s)	615, 651
HpySE526I	ACGT	1 cut(s)	86
Hsp92II	CATG	5 cut(s)	166, 304, 433, 460, 496
Ksp22I	TGATCA	1 cut(s)	468
Kzo9I	GATC	3 cut(s)	240, 327, 468
LmnI	GCTCC	1 cut(s)	118
Lsp1109I	GCAGC	1 cut(s)	4
LweI	GCATC	2 cut(s)	4, 414
MaeII	ACGT	1 cut(s)	86
MaeIII	GTNAC	2 cut(s)	183, 700
MalI	GATC	3 cut(s)	242, 329, 470
MboI	GATC	3 cut(s)	240, 327, 468
MboII	GAAGA	3 cut(s)	115, 259, 262
MhlI	GDGCHC	2 cut(s)	198, 599
MlsI	TGGCCA	1 cut(s)	753
MluCI	AATT	1 cut(s)	461
MluNI	TGGCCA	1 cut(s)	753
MmeI	TCCRAC	2 cut(s)	107, 306
MnlI	CCTC	6 cut(s)	59, 275, 288, 381, 676, 691
Mox20I	TGGCCA	1 cut(s)	753
MscI	TGGCCA	1 cut(s)	753
MseI	TTAA	1 cut(s)	93
MslI	CAYNNNNRTG	1 cut(s)	431
Msp20I	TGGCCA	1 cut(s)	753
MspA1I	CMGCKG	2 cut(s)	619, 655
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	1 cut(s)	538
MvaI	CCWGG	1 cut(s)	538
MwoI	GCNNNNNNNGC	4 cut(s)	17, 521, 542, 737
NdeII	GATC	3 cut(s)	240, 327, 468
NlaIII	CATG	5 cut(s)	166, 304, 433, 460, 496
NlaIV	GGNNCC	2 cut(s)	47, 81
NspI	RCATGY	1 cut(s)	496
PagI	TCATGA	2 cut(s)	429, 456
PfeI	GAWTC	2 cut(s)	580, 622
PkrI	GCNGC	2 cut(s)	19, 657
PpuMI	RGGWCCY	1 cut(s)	390
PshAI	GACNNNNGTC	1 cut(s)	29
Psp1406I	AACGTT	1 cut(s)	86
Psp5II	RGGWCCY	1 cut(s)	390
Psp6I	CCWGG	1 cut(s)	536
PspEI	GGTNACC	2 cut(s)	183, 700
PspGI	CCWGG	1 cut(s)	536
PspN4I	GGNNCC	2 cut(s)	47, 81
PspPI	GGNCC	3 cut(s)	171, 219, 390
PspPPI	RGGWCCY	1 cut(s)	390
PstI	CTGCAG	1 cut(s)	13
PstNI	CAGNNNCTG	1 cut(s)	17
PvuII	CAGCTG	1 cut(s)	619
RsaI	GTAC	2 cut(s)	238, 491
RsaNI	GTAC	2 cut(s)	237, 490
RseI	CAYNNNNRTG	1 cut(s)	431
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	2 cut(s)	18, 656
Sau3AI	GATC	3 cut(s)	240, 327, 468
Sau96I	GGNCC	3 cut(s)	171, 219, 390
ScrFI	CCNGG	1 cut(s)	538
SduI	GDGCHC	2 cut(s)	198, 599
SetI	ASST	9 cut(s)	51, 89, 144, 176, 392, 616, 621, 687, 702
SfaNI	GCATC	2 cut(s)	4, 414
SfcI	CTRYAG	1 cut(s)	9
SinI	GGWCC	3 cut(s)	171, 219, 390
SmiMI	CAYNNNNRTG	1 cut(s)	431
Sse9I	AATT	1 cut(s)	461
SsiI	CCGC	1 cut(s)	655
StyD4I	CCNGG	1 cut(s)	536
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	3 cut(s)	28, 454, 601
TaiI	ACGT	1 cut(s)	89
TaqI	TCGA	1 cut(s)	246
TasI	AATT	1 cut(s)	461
TatI	WGTACW	1 cut(s)	489
TauI	GCSGC	1 cut(s)	658
TfiI	GAWTC	2 cut(s)	580, 622
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	1 cut(s)	120
TseI	GCWGC	1 cut(s)	17
TspDTI	ATGAA	4 cut(s)	262, 325, 473, 562
TspGWI	ACGGA	1 cut(s)	548
TspRI	CASTG	1 cut(s)	120
VneI	GTGCAC	1 cut(s)	194
VpaK11BI	GGWCC	3 cut(s)	171, 219, 390
XceI	RCATGY	1 cut(s)	496
XmiI	GTMKAC	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.