Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010884

Physical Location & Seq

Genomic Coordinates Forward (+)

61433248 .. 61436374

Gene Structure 3127 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00268330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGTTTCTGCAGATGCTGCTCGGACTGTGGTCGGTATTATAGGAAACCTCATCTCATTCTTTTTGTTCTTGTCGCCGGTTCCAACTTTTGTTCGAATATGGAAGAAAGGGTCAGTGGAGCAATACTCACCAGTCCCATACCTTGCAACCCTAGTCAACTGCATGGTGTGGACCTTGTATGGGTTACCCATCGTGCACCCGGATAGCACTCTGGTGTGGACCATAAACGGGTCGGGTACGGTCATCGAGGTCGTCTACATCATCCTCTTCCTTATTTATTCCGACAAGAAAAAGAGGCTTATGGTGGTTCTGGTGGTGGCTGTGGAGATCATATTCCTTGGTGTTCTAACCGCTCTGGTTCTCACTTTGGCTCACACGCATACCAAGAGGTCCATGATTGTGGGCATCATATGCATTGCCTTCAACATCATGATGTATGCTGCACCATTGACCGTCATGAAAATGGTGATCACTACGAAAAGTGTGGAGTACATGCCATTTTTCCTCTCGTTTGCTTCCTTAGCGAATGGTCTTGCCTGGACTGCATATGCTCTCATCCGTTTTGACCCCTTCATCACTATTCCTAACGGGCTGGGCACAGTTTTTGGTTTAGCTCAGCTGCTTCTGTATGCCACATACTACAAGTCGACTCAGCGACAGATAGCAGAAAGGAAAGGCAGGGAGGTGAACTTGTCAGAGGTGACTATAGATGATGAACCCAAAAAGATAGGCAGCCATACTAATCAGAATAGCCACGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009507 GO:0009536 GO:0009987 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

253

Amino Acids

28.12

Weight (kDa)

9.28

Isoelectric Point (pI)

31.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	10 - 98	6e-24	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	133 - 217	4.6e-24	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66770 AT4G10850
fragaria_vesca	FvH4_5g11560 FvH4_5g11560 FvH4_5g11560
malus_domestica	MD06G1112000.v1.1 MD14G1133400.v1.1
prunus_persica	Prupe.5G125100_v2.0.a1
pyrus_communis	pycom06g10500
rosa_chinensis	RchiOBHm_Chr7g0186191
rosa_laevigata	RLG00000004857
rosa_multiflora	Rmu_sc0009528.1_g000015
rosa_roxburghii	Rroxscaffold_3G00268330
rosa_rugosa	Rorug06G0472600 Rorug06G0472600
rosa_samantha	Rh7AG068800 Rh7BG084700 Rh7CG079300 Rh7DG079600
rosa_wichuraiana	Rw7G006620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	353
AccI	GTMKAC	2 cut(s)	255, 647
AciI	CCGC	1 cut(s)	351
AfaI	GTAC	2 cut(s)	238, 491
AfiI	CCNNNNNNNGG	2 cut(s)	180, 228
AgsI	TTSAA	1 cut(s)	424
AjnI	CCWGG	1 cut(s)	536
AleI	CACNNNNGTG	1 cut(s)	212
AluBI	AGCT	2 cut(s)	614, 619
AluI	AGCT	2 cut(s)	614, 619
Alw21I	GWGCWC	1 cut(s)	198
Alw44I	GTGCAC	1 cut(s)	194
AlwNI	CAGNNNCTG	1 cut(s)	17
ApaLI	GTGCAC	1 cut(s)	194
ApeKI	GCWGC	4 cut(s)	17, 440, 619, 732
AspS9I	GGNCC	3 cut(s)	171, 219, 390
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	4 cut(s)	120, 478, 697, 712
AsuII	TTCGAA	1 cut(s)	94
AvaII	GGWCC	3 cut(s)	171, 219, 390
BaeGI	GKGCMC	2 cut(s)	198, 599
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	4 cut(s)	4, 427, 606, 744
BccI	CCATC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	538
BclI	TGATCA	1 cut(s)	468
BcnI	CCSGG	1 cut(s)	200
BfaI	CTAG	1 cut(s)	152
BfmI	CTRYAG	2 cut(s)	9, 705
BisI	GCNGC	4 cut(s)	18, 441, 620, 733
BlpI	GCTNAGC	1 cut(s)	615
BlsI	GCNGC	4 cut(s)	19, 442, 621, 734
Bme1390I	CCNGG	2 cut(s)	200, 538
Bme18I	GGWCC	3 cut(s)	171, 219, 390
BmgT120I	GGNCC	3 cut(s)	171, 219, 390
BmiI	GGNNCC	1 cut(s)	81
BmrFI	CCNGG	2 cut(s)	200, 538
BmsI	GCATC	2 cut(s)	4, 414
BoxI	GACNNNNGTC	1 cut(s)	29
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
Bpu10I	CCTNAGC	1 cut(s)	520
Bpu1102I	GCTNAGC	1 cut(s)	615
Bpu14I	TTCGAA	1 cut(s)	94
BpuMI	CCSGG	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 228
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	131
Bse3DI	GCAATG	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	538
BseDI	CCNNGG	1 cut(s)	337
BseGI	GGATG	2 cut(s)	261, 555
BseLI	CCNNNNNNNGG	2 cut(s)	180, 228
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	2 cut(s)	629, 665
BseNI	ACTGG	1 cut(s)	131
BseSI	GKGCMC	2 cut(s)	198, 599
BseXI	GCAGC	4 cut(s)	4, 427, 606, 744
BseYI	CCCAGC	1 cut(s)	592
BsgI	GTGCAG	1 cut(s)	426
BsiHKAI	GWGCWC	1 cut(s)	198
BsiSI	CCGG	2 cut(s)	77, 200
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	2 cut(s)	180, 228
BsmFI	GGGAC	1 cut(s)	119
Bsp119I	TTCGAA	1 cut(s)	94
Bsp1286I	GDGCHC	2 cut(s)	198, 599
Bsp143I	GATC	2 cut(s)	327, 468
Bsp1720I	GCTNAGC	1 cut(s)	615
BspACI	CCGC	1 cut(s)	351
BspCNI	CTCAG	2 cut(s)	628, 664
BspHI	TCATGA	2 cut(s)	429, 456
BspLI	GGNNCC	1 cut(s)	81
BspMAI	CTGCAG	1 cut(s)	13
BspT104I	TTCGAA	1 cut(s)	94
BsrBI	CCGCTC	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	414
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	337
BssMI	GATC	2 cut(s)	327, 468
BssT1I	CCWWGG	1 cut(s)	337
Bst2UI	CCWGG	1 cut(s)	538
Bst4CI	ACNGT	4 cut(s)	28, 241, 454, 601
Bst6I	CTCTTC	1 cut(s)	272
BstAPI	GCANNNNNTGC	2 cut(s)	17, 411
BstBI	TTCGAA	1 cut(s)	94
BstDEI	CTNAG	3 cut(s)	520, 615, 651
BstEII	GGTNACC	1 cut(s)	183
BstF5I	GGATG	2 cut(s)	261, 555
BstKTI	GATC	2 cut(s)	330, 471
BstMBI	GATC	2 cut(s)	327, 468
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 411, 521, 542
BstNI	CCWGG	1 cut(s)	538
BstNSI	RCATGY	1 cut(s)	496
BstPAI	GACNNNNGTC	1 cut(s)	29
BstPI	GGTNACC	1 cut(s)	183
BstSCI	CCNGG	2 cut(s)	198, 536
BstSFI	CTRYAG	2 cut(s)	9, 705
BstSLI	GKGCMC	2 cut(s)	198, 599
BstV1I	GCAGC	4 cut(s)	4, 427, 606, 744
BstXI	CCANNNNNNTGG	1 cut(s)	400
BtsCI	GGATG	2 cut(s)	261, 555
BtsIMutI	CAGTG	1 cut(s)	120
CaiI	CAGNNNCTG	1 cut(s)	17
CciI	TCATGA	2 cut(s)	429, 456
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	3 cut(s)	171, 219, 390
Csp6I	GTAC	2 cut(s)	237, 490
CviAII	CATG	5 cut(s)	163, 394, 430, 457, 493
CviJI	RGCY	8 cut(s)	298, 320, 371, 592, 614, 619, 735, 753
CviKI_1	RGCY	8 cut(s)	298, 320, 371, 592, 614, 619, 735, 753
CviQI	GTAC	2 cut(s)	237, 490
DdeI	CTNAG	3 cut(s)	520, 615, 651
DpnI	GATC	2 cut(s)	329, 470
DpnII	GATC	2 cut(s)	327, 468
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Eco130I	CCWWGG	1 cut(s)	337
Eco47I	GGWCC	3 cut(s)	171, 219, 390
Eco91I	GGTNACC	1 cut(s)	183
EcoO65I	GGTNACC	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	536
EcoT14I	CCWWGG	1 cut(s)	337
EcoT22I	ATGCAT	1 cut(s)	416
ErhI	CCWWGG	1 cut(s)	337
FaeI	CATG	5 cut(s)	166, 397, 433, 460, 496
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	5 cut(s)	162, 393, 429, 456, 492
FauNDI	CATATG	2 cut(s)	410, 547
FbaI	TGATCA	1 cut(s)	468
FblI	GTMKAC	2 cut(s)	255, 647
Fnu4HI	GCNGC	4 cut(s)	18, 441, 620, 733
FokI	GGATG	2 cut(s)	248, 542
Fsp4HI	GCNGC	4 cut(s)	18, 441, 620, 733
FspBI	CTAG	1 cut(s)	152
GluI	GCNGC	4 cut(s)	18, 441, 620, 733
GsaI	CCCAGC	1 cut(s)	596
HapII	CCGG	2 cut(s)	77, 200
Hin1II	CATG	5 cut(s)	166, 397, 433, 460, 496
HincII	GTYRAC	2 cut(s)	157, 648
HindII	GTYRAC	2 cut(s)	157, 648
HinfI	GANTC	1 cut(s)	649
HpaII	CCGG	2 cut(s)	77, 200
HphI	GGTGA	4 cut(s)	120, 478, 697, 712
Hpy166II	GTNNAC	7 cut(s)	157, 171, 196, 219, 256, 648, 688
Hpy188I	TCNGA	4 cut(s)	24, 283, 697, 747
Hpy188III	TCNNGA	2 cut(s)	430, 457
Hpy8I	GTNNAC	7 cut(s)	157, 171, 196, 219, 256, 648, 688
HpyAV	CCTTC	2 cut(s)	430, 580
HpyCH4III	ACNGT	4 cut(s)	28, 241, 454, 601
HpyCH4V	TGCA	7 cut(s)	11, 146, 162, 196, 414, 443, 545
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 411, 521, 542
HpyF3I	CTNAG	3 cut(s)	520, 615, 651
Hsp92II	CATG	5 cut(s)	166, 397, 433, 460, 496
Ksp22I	TGATCA	1 cut(s)	468
Kzo9I	GATC	2 cut(s)	327, 468
LmnI	GCTCC	1 cut(s)	118
Lsp1109I	GCAGC	4 cut(s)	4, 427, 606, 744
LweI	GCATC	2 cut(s)	4, 414
MaeI	CTAG	1 cut(s)	152
MaeIII	GTNAC	2 cut(s)	183, 700
MalI	GATC	2 cut(s)	329, 470
MbiI	CCGCTC	1 cut(s)	353
MboI	GATC	2 cut(s)	327, 468
MboII	GAAGA	2 cut(s)	115, 259
MhlI	GDGCHC	2 cut(s)	198, 599
MlyI	GAGTC	1 cut(s)	643
MmeI	TCCRAC	2 cut(s)	107, 306
MnlI	CCTC	8 cut(s)	59, 241, 275, 288, 381, 515, 676, 691
Mph1103I	ATGCAT	1 cut(s)	416
MslI	CAYNNNNRTG	4 cut(s)	212, 398, 431, 461
MspA1I	CMGCKG	1 cut(s)	619
MspI	CCGG	2 cut(s)	77, 200
MspR9I	CCNGG	2 cut(s)	200, 538
MvaI	CCWGG	1 cut(s)	538
MwoI	GCNNNNNNNGC	4 cut(s)	17, 411, 521, 542
NciI	CCSGG	1 cut(s)	200
NdeI	CATATG	2 cut(s)	410, 547
NdeII	GATC	2 cut(s)	327, 468
NlaIII	CATG	5 cut(s)	166, 397, 433, 460, 496
NlaIV	GGNNCC	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	700
NsiI	ATGCAT	1 cut(s)	416
NspI	RCATGY	1 cut(s)	496
NspV	TTCGAA	1 cut(s)	94
OliI	CACNNNNGTG	1 cut(s)	212
PagI	TCATGA	2 cut(s)	429, 456
PkrI	GCNGC	4 cut(s)	19, 442, 621, 734
PleI	GAGTC	1 cut(s)	643
PpsI	GAGTC	1 cut(s)	643
PshAI	GACNNNNGTC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	536
PspEI	GGTNACC	1 cut(s)	183
PspFI	CCCAGC	1 cut(s)	592
PspGI	CCWGG	1 cut(s)	536
PspN4I	GGNNCC	1 cut(s)	81
PspPI	GGNCC	3 cut(s)	171, 219, 390
PstI	CTGCAG	1 cut(s)	13
PstNI	CAGNNNCTG	1 cut(s)	17
PvuII	CAGCTG	1 cut(s)	619
RsaI	GTAC	2 cut(s)	238, 491
RsaNI	GTAC	2 cut(s)	237, 490
RseI	CAYNNNNRTG	4 cut(s)	212, 398, 431, 461
SalI	GTCGAC	1 cut(s)	646
SatI	GCNGC	4 cut(s)	18, 441, 620, 733
Sau3AI	GATC	2 cut(s)	327, 468
Sau96I	GGNCC	3 cut(s)	171, 219, 390
SchI	GAGTC	1 cut(s)	643
ScrFI	CCNGG	2 cut(s)	200, 538
SduI	GDGCHC	2 cut(s)	198, 599
SetI	ASST	9 cut(s)	51, 144, 176, 252, 392, 616, 621, 687, 702
SfaNI	GCATC	2 cut(s)	4, 414
SfcI	CTRYAG	2 cut(s)	9, 705
SfuI	TTCGAA	1 cut(s)	94
SinI	GGWCC	3 cut(s)	171, 219, 390
SmiMI	CAYNNNNRTG	4 cut(s)	212, 398, 431, 461
SsiI	CCGC	1 cut(s)	351
SspMI	CTAG	1 cut(s)	152
StyD4I	CCNGG	2 cut(s)	198, 536
StyI	CCWWGG	1 cut(s)	337
TaaI	ACNGT	4 cut(s)	28, 241, 454, 601
TaqI	TCGA	3 cut(s)	94, 246, 647
TatI	WGTACW	1 cut(s)	489
TscAI	CASTG	1 cut(s)	120
TseFI	GTSAC	1 cut(s)	700
TseI	GCWGC	4 cut(s)	17, 440, 619, 732
Tsp45I	GTSAC	1 cut(s)	700
TspDTI	ATGAA	3 cut(s)	473, 562, 729
TspGWI	ACGGA	1 cut(s)	548
TspRI	CASTG	1 cut(s)	120
VneI	GTGCAC	1 cut(s)	194
VpaK11BI	GGWCC	3 cut(s)	171, 219, 390
XceI	RCATGY	1 cut(s)	496
XmiI	GTMKAC	2 cut(s)	255, 647
XspI	CTAG	1 cut(s)	152
Zsp2I	ATGCAT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.