Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0010884

Physical Location & Seq

Genomic Coordinates Reverse (-)

21124942 .. 21127953

Gene Structure 3012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1133400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGTTTCTGCAGATGCTATTCGAACTGTGGTCGGTATCATGGGAAACTTCATCGCACTCACTCTGTTCCTCTCACCAGTGCAAACCTTCGTTCGAATTTGGAAAAAAGGGTCAGTGGAGCAATACTCACCAGTTCCATACCTTGCAACCCTATTTAACTGCATGGCATGGGCCCTTTACGGATTGCCTATGGTGCACCCGCACAGTATTCTATTGCTGACCATCAATACCACTGCAGTTTTCATTGAGCTTTCCTTTGTCATCATCTTCCTCATCTACGCATCTGACAAGAAGCAGAGGCTCAGAGTGTTTCTCGTGCTGCTTTCGGAGCTCGTTTTCATGGTTCTTCTGGCCTTTCTTGTTATCAAATTGGCCCACACATACAGCAAGAGGTCACTAATTGTTGGCCTAGTTTGCGTTCTAGGTAACATCGTGATGTATGCTTCACCTCTATCTGTCATGAAATTGGTGATTACGACAAAGAGTGTGGAATACATGCCCTTTTTCCTCTCATTGTTTACCTTTCTCAATAGCGTTGCCTGGTTCACATATGCTCAGTTCCGTTTTGACATTTACTTGACTATTCCGAATGGGCTGGGCTTACTTTTTGGATCAGCTCAACTGCTTCTCTATGCTACATACTACAAGAACACAAAGAGACTGATGGCAGAAAGGAAAGCCAGACAATTGTGTTTGACTGAGGTGGTTTCCGACAGAGATGAAACCAAAAAGACTGGCAGCACTCATCAGAACGGCCAGCTTCCCGCTCAGAACAACGGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009507 GO:0009536 GO:0009987 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

262

Amino Acids

29.47

Weight (kDa)

9.63

Isoelectric Point (pI)

34.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	10 - 97	1.2e-18	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	134 - 218	4e-23	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66770 AT4G10850
fragaria_vesca	FvH4_5g11560 FvH4_5g11560 FvH4_5g11560
malus_domestica	MD06G1112000.v1.1 MD14G1133400.v1.1
prunus_persica	Prupe.5G125100_v2.0.a1
pyrus_communis	pycom06g10500
rosa_chinensis	RchiOBHm_Chr7g0186191
rosa_laevigata	RLG00000004857
rosa_multiflora	Rmu_sc0009528.1_g000015
rosa_roxburghii	Rroxscaffold_3G00268330
rosa_rugosa	Rorug06G0472600 Rorug06G0472600
rosa_samantha	Rh7AG068800 Rh7BG084700 Rh7CG079300 Rh7DG079600
rosa_wichuraiana	Rw7G006620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	767
AciI	CCGC	2 cut(s)	200, 765
AclWI	GGATC	1 cut(s)	619
AcoI	YGGCCR	1 cut(s)	754
AcsI	RAATTY	1 cut(s)	96
AjnI	CCWGG	1 cut(s)	539
AluBI	AGCT	4 cut(s)	250, 331, 617, 760
AluI	AGCT	4 cut(s)	250, 331, 617, 760
Alw21I	GWGCWC	2 cut(s)	198, 333
Alw26I	GTCTC	1 cut(s)	652
Alw44I	GTGCAC	1 cut(s)	194
AlwI	GGATC	1 cut(s)	619
AoxI	GGCC	5 cut(s)	171, 351, 372, 406, 754
ApaI	GGGCCC	1 cut(s)	175
ApaLI	GTGCAC	1 cut(s)	194
ApeKI	GCWGC	2 cut(s)	319, 738
ApoI	RAATTY	1 cut(s)	96
AspS9I	GGNCC	3 cut(s)	171, 172, 373
AsuHPI	GGTGA	4 cut(s)	66, 120, 438, 481
AsuII	TTCGAA	2 cut(s)	22, 94
BaeGI	GKGCMC	2 cut(s)	175, 198
BanII	GRGCYC	2 cut(s)	175, 333
BauI	CACGAG	1 cut(s)	314
Bbv12I	GWGCWC	2 cut(s)	198, 333
BbvI	GCAGC	2 cut(s)	306, 750
BccI	CCATC	2 cut(s)	230, 658
BceAI	ACGGC	1 cut(s)	769
BciT130I	CCWGG	1 cut(s)	541
BcoDI	GTCTC	1 cut(s)	652
BfaI	CTAG	2 cut(s)	410, 422
BfmI	CTRYAG	2 cut(s)	9, 234
BisI	GCNGC	2 cut(s)	320, 739
BlsI	GCNGC	2 cut(s)	321, 740
Bme1390I	CCNGG	1 cut(s)	541
BmgT120I	GGNCC	3 cut(s)	171, 172, 373
BmiI	GGNNCC	1 cut(s)	173
BmrFI	CCNGG	1 cut(s)	541
BmsI	GCATC	2 cut(s)	4, 290
BplI	GAGNNNNNCTC	4 cut(s)	110, 142, 297, 329
Bpu14I	TTCGAA	2 cut(s)	22, 94
Bse1I	ACTGG	3 cut(s)	77, 131, 739
BseBI	CCWGG	1 cut(s)	541
BseMII	CTCAG	4 cut(s)	316, 569, 690, 782
BseNI	ACTGG	3 cut(s)	77, 131, 739
BseSI	GKGCMC	2 cut(s)	175, 198
BseXI	GCAGC	2 cut(s)	306, 750
BseYI	CCCAGC	1 cut(s)	595
BshFI	GGCC	5 cut(s)	173, 353, 374, 408, 756
BsiHKAI	GWGCWC	2 cut(s)	198, 333
BsmAI	GTCTC	1 cut(s)	652
BsnI	GGCC	5 cut(s)	173, 353, 374, 408, 756
Bsp119I	TTCGAA	2 cut(s)	22, 94
Bsp120I	GGGCCC	1 cut(s)	171
Bsp1286I	GDGCHC	3 cut(s)	175, 198, 333
Bsp143I	GATC	1 cut(s)	611
BspACI	CCGC	2 cut(s)	200, 765
BspANI	GGCC	5 cut(s)	173, 353, 374, 408, 756
BspCNI	CTCAG	4 cut(s)	315, 568, 691, 781
BspHI	TCATGA	1 cut(s)	459
BspLI	GGNNCC	1 cut(s)	173
BspMAI	CTGCAG	2 cut(s)	13, 238
BspPI	GGATC	1 cut(s)	619
BspT104I	TTCGAA	2 cut(s)	22, 94
BsrBI	CCGCTC	1 cut(s)	767
BsrI	ACTGG	3 cut(s)	77, 131, 739
BssMI	GATC	1 cut(s)	611
BssSI	CACGAG	1 cut(s)	314
Bst2BI	CACGAG	1 cut(s)	314
Bst2UI	CCWGG	1 cut(s)	541
Bst4CI	ACNGT	2 cut(s)	28, 206
BstBI	TTCGAA	2 cut(s)	22, 94
BstC8I	GCNNGC	1 cut(s)	758
BstDEI	CTNAG	4 cut(s)	302, 555, 699, 768
BstKTI	GATC	1 cut(s)	614
BstMAI	GTCTC	1 cut(s)	652
BstMBI	GATC	1 cut(s)	611
BstMWI	GCNNNNNNNGC	3 cut(s)	193, 328, 414
BstNI	CCWGG	1 cut(s)	541
BstNSI	RCATGY	1 cut(s)	499
BstSCI	CCNGG	1 cut(s)	539
BstSFI	CTRYAG	2 cut(s)	9, 234
BstSLI	GKGCMC	2 cut(s)	175, 198
BstV1I	GCAGC	2 cut(s)	306, 750
BsuRI	GGCC	5 cut(s)	173, 353, 374, 408, 756
BtgZI	GCGATG	1 cut(s)	37
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	3 cut(s)	84, 120, 231
Cac8I	GCNNGC	1 cut(s)	758
CciI	TCATGA	1 cut(s)	459
Cfr13I	GGNCC	3 cut(s)	171, 172, 373
CspCI	CAANNNNNGTGG	2 cut(s)	468, 503
CviAII	CATG	7 cut(s)	40, 163, 168, 340, 460, 496, 783
DdeI	CTNAG	4 cut(s)	302, 555, 699, 768
DpnI	GATC	1 cut(s)	613
DpnII	GATC	1 cut(s)	611
EaeI	YGGCCR	1 cut(s)	754
Ecl136II	GAGCTC	1 cut(s)	331
Eco24I	GRGCYC	2 cut(s)	175, 333
Eco53kI	GAGCTC	1 cut(s)	331
EcoICRI	GAGCTC	1 cut(s)	331
EcoO109I	RGGNCCY	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	539
EcoT38I	GRGCYC	2 cut(s)	175, 333
FaeI	CATG	7 cut(s)	43, 166, 171, 343, 463, 499, 786
FatI	CATG	7 cut(s)	39, 162, 167, 339, 459, 495, 782
FauI	CCCGC	2 cut(s)	207, 772
FauNDI	CATATG	1 cut(s)	550
Fnu4HI	GCNGC	2 cut(s)	320, 739
FriOI	GRGCYC	2 cut(s)	175, 333
Fsp4HI	GCNGC	2 cut(s)	320, 739
FspBI	CTAG	2 cut(s)	410, 422
GluI	GCNGC	2 cut(s)	320, 739
GsaI	CCCAGC	1 cut(s)	599
HaeIII	GGCC	5 cut(s)	173, 353, 374, 408, 756
Hin1II	CATG	7 cut(s)	43, 166, 171, 343, 463, 499, 786
HphI	GGTGA	4 cut(s)	66, 120, 438, 481
Hpy166II	GTNNAC	3 cut(s)	196, 519, 546
Hpy188I	TCNGA	7 cut(s)	286, 305, 328, 588, 712, 750, 771
Hpy188III	TCNNGA	2 cut(s)	433, 460
Hpy8I	GTNNAC	3 cut(s)	196, 519, 546
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	2 cut(s)	28, 206
HpyCH4V	TGCA	6 cut(s)	11, 82, 146, 162, 196, 236
HpyF10VI	GCNNNNNNNGC	3 cut(s)	193, 328, 414
HpyF3I	CTNAG	4 cut(s)	302, 555, 699, 768
Hsp92II	CATG	7 cut(s)	43, 166, 171, 343, 463, 499, 786
Kzo9I	GATC	1 cut(s)	611
LmnI	GCTCC	2 cut(s)	118, 328
LpnPI	CCDG	9 cut(s)	90, 144, 335, 526, 553, 581, 694, 720, 770
Lsp1109I	GCAGC	2 cut(s)	306, 750
LweI	GCATC	2 cut(s)	4, 290
MaeI	CTAG	2 cut(s)	410, 422
MaeIII	GTNAC	2 cut(s)	393, 425
MalI	GATC	1 cut(s)	613
MbiI	CCGCTC	1 cut(s)	767
MboI	GATC	1 cut(s)	611
MboII	GAAGA	2 cut(s)	259, 338
MfeI	CAATTG	1 cut(s)	686
MhlI	GDGCHC	3 cut(s)	175, 198, 333
MluCI	AATT	5 cut(s)	96, 368, 399, 464, 686
MmeI	TCCRAC	1 cut(s)	735
MnlI	CCTC	7 cut(s)	80, 281, 291, 384, 459, 518, 694
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	1 cut(s)	434
MspR9I	CCNGG	1 cut(s)	541
MunI	CAATTG	1 cut(s)	686
MvaI	CCWGG	1 cut(s)	541
MwoI	GCNNNNNNNGC	3 cut(s)	193, 328, 414
NdeI	CATATG	1 cut(s)	550
NdeII	GATC	1 cut(s)	611
NlaIII	CATG	7 cut(s)	43, 166, 171, 343, 463, 499, 786
NlaIV	GGNNCC	1 cut(s)	173
NmuCI	GTSAC	1 cut(s)	393
NspI	RCATGY	1 cut(s)	499
NspV	TTCGAA	2 cut(s)	22, 94
PagI	TCATGA	1 cut(s)	459
PkrI	GCNGC	2 cut(s)	321, 740
Psp124BI	GAGCTC	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	539
PspFI	CCCAGC	1 cut(s)	595
PspGI	CCWGG	1 cut(s)	539
PspN4I	GGNNCC	1 cut(s)	173
PspOMI	GGGCCC	1 cut(s)	171
PspPI	GGNCC	3 cut(s)	171, 172, 373
PstI	CTGCAG	2 cut(s)	13, 238
RseI	CAYNNNNRTG	1 cut(s)	434
SacI	GAGCTC	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	2 cut(s)	320, 739
Sau3AI	GATC	1 cut(s)	611
Sau96I	GGNCC	3 cut(s)	171, 172, 373
ScrFI	CCNGG	1 cut(s)	541
SduI	GDGCHC	3 cut(s)	175, 198, 333
SfaNI	GCATC	2 cut(s)	4, 290
SfcI	CTRYAG	2 cut(s)	9, 234
SfuI	TTCGAA	2 cut(s)	22, 94
SmiMI	CAYNNNNRTG	1 cut(s)	434
Sse9I	AATT	5 cut(s)	96, 368, 399, 464, 686
SsiI	CCGC	2 cut(s)	200, 765
SspMI	CTAG	2 cut(s)	410, 422
SstI	GAGCTC	1 cut(s)	333
StyD4I	CCNGG	1 cut(s)	539
TaaI	ACNGT	2 cut(s)	28, 206
TaqI	TCGA	2 cut(s)	22, 94
TasI	AATT	5 cut(s)	96, 368, 399, 464, 686
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	3 cut(s)	84, 120, 238
TseFI	GTSAC	1 cut(s)	393
TseI	GCWGC	2 cut(s)	319, 738
Tsp45I	GTSAC	1 cut(s)	393
TspDTI	ATGAA	5 cut(s)	40, 232, 328, 476, 735
TspGWI	ACGGA	2 cut(s)	195, 551
TspRI	CASTG	3 cut(s)	84, 120, 238
VneI	GTGCAC	1 cut(s)	194
XapI	RAATTY	1 cut(s)	96
XceI	RCATGY	1 cut(s)	499
XspI	CTAG	2 cut(s)	410, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.