Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009528.1

Orthogroup ID

OG0010884

Physical Location & Seq

Genomic Coordinates Reverse (-)

46889 .. 49969

Gene Structure 3081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009528.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atggtttctgcagatgctgctcggactgtggtcggtattataggaaacctcatctcattctttttgttcttgtcgccggttccaacttttgttcgaatatggaagaaagggtcagtggagcaatactcaccagtcccataccttgcaaccctagtcaactgcatggtgtggaccttgtatgggttacccatcgtgcacccggatagcactctggtgtggaccataaacgggtcgggtatggtcatcgaggtcgtctacatcatcctcttcctcatttattccgacaagaaaaagaggcttatggtggttctggtggtggctgtggagatcatattccttggtgttcttaccgctctggttctcactttggctcacacgcataccaagaggtccttgattgtgggcatcatatgcattgccttcaacatcatgatgtatgctgcaccattgaccgtcatgaaaatggtgatcactacaaaaagtgtggagtacatgccatttttcctctcgtttgcttcccttgcgaatggtcttgcctggactgcatatgctctcatccgctttgaccccttcatcactattcctaacgggctgggcacagtttttggtttagctcagctgcttctgtatgccacatactacaagtcgactcagcgacagatagcagaaaggaaaggcagggaggtgaacttgtcagagctactcatgacgaccatggtttctgtagatgatgctcggaagtggttgtgtcaggacccaccccgagatctcaccctagaaactgaggtggccctgcggggcccactcattgagaagatcctactaaaaattctgcagaacctcttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009507 GO:0009536 GO:0009987 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

282

Amino Acids

31.59

Weight (kDa)

9.18

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66770 AT4G10850
fragaria_vesca	FvH4_5g11560 FvH4_5g11560 FvH4_5g11560
malus_domestica	MD06G1112000.v1.1 MD14G1133400.v1.1
prunus_persica	Prupe.5G125100_v2.0.a1
pyrus_communis	pycom06g10500
rosa_chinensis	RchiOBHm_Chr7g0186191
rosa_laevigata	RLG00000004857
rosa_multiflora	Rmu_sc0009528.1_g000015
rosa_roxburghii	Rroxscaffold_3G00268330
rosa_rugosa	Rorug06G0472600 Rorug06G0472600
rosa_samantha	Rh7AG068800 Rh7BG084700 Rh7CG079300 Rh7DG079600
rosa_wichuraiana	Rw7G006620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	353
AccI	GTMKAC	2 cut(s)	255, 647
AciI	CCGC	3 cut(s)	351, 559, 796
AclWI	GGATC	1 cut(s)	811
AcsI	RAATTY	1 cut(s)	828
AfaI	GTAC	1 cut(s)	491
AfiI	CCNNNNNNNGG	2 cut(s)	180, 228
AgsI	TTSAA	1 cut(s)	424
AjnI	CCWGG	1 cut(s)	536
AleI	CACNNNNGTG	1 cut(s)	212
AluBI	AGCT	3 cut(s)	614, 619, 700
AluI	AGCT	3 cut(s)	614, 619, 700
Alw21I	GWGCWC	1 cut(s)	198
Alw44I	GTGCAC	1 cut(s)	194
AlwI	GGATC	1 cut(s)	811
AlwNI	CAGNNNCTG	1 cut(s)	17
Ama87I	CYCGRG	1 cut(s)	762
AoxI	GGCC	2 cut(s)	789, 799
ApaI	GGGCCC	1 cut(s)	803
ApaLI	GTGCAC	1 cut(s)	194
ApeKI	GCWGC	3 cut(s)	17, 440, 619
ApoI	RAATTY	1 cut(s)	828
Asp700I	GAANNNNTTC	1 cut(s)	842
AspS9I	GGNCC	7 cut(s)	171, 219, 390, 754, 790, 799, 800
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	4 cut(s)	120, 478, 697, 763
AsuII	TTCGAA	1 cut(s)	94
AvaI	CYCGRG	1 cut(s)	762
AvaII	GGWCC	4 cut(s)	171, 219, 390, 754
BaeGI	GKGCMC	3 cut(s)	198, 599, 803
BanII	GRGCYC	1 cut(s)	803
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	3 cut(s)	4, 427, 606
BccI	CCATC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	538
BclI	TGATCA	1 cut(s)	468
BcnI	CCSGG	1 cut(s)	200
BfaI	CTAG	2 cut(s)	152, 776
BfmI	CTRYAG	3 cut(s)	9, 723, 833
BglII	AGATCT	1 cut(s)	766
BisI	GCNGC	3 cut(s)	18, 441, 620
BlpI	GCTNAGC	1 cut(s)	615
BlsI	GCNGC	3 cut(s)	19, 442, 621
Bme1390I	CCNGG	2 cut(s)	200, 538
Bme18I	GGWCC	4 cut(s)	171, 219, 390, 754
BmeT110I	CYCGRG	1 cut(s)	762
BmgT120I	GGNCC	7 cut(s)	171, 219, 390, 754, 790, 799, 800
BmiI	GGNNCC	4 cut(s)	81, 756, 800, 801
BmrFI	CCNGG	2 cut(s)	200, 538
BmsI	GCATC	3 cut(s)	4, 414, 721
BoxI	GACNNNNGTC	1 cut(s)	29
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
Bpu1102I	GCTNAGC	1 cut(s)	615
Bpu14I	TTCGAA	1 cut(s)	94
BpuMI	CCSGG	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	337, 714
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 228
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	131
Bse3DI	GCAATG	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	538
BseDI	CCNNGG	2 cut(s)	337, 714
BseGI	GGATG	2 cut(s)	261, 555
BseLI	CCNNNNNNNGG	2 cut(s)	180, 228
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	3 cut(s)	629, 665, 774
BseNI	ACTGG	1 cut(s)	131
BseSI	GKGCMC	3 cut(s)	198, 599, 803
BseXI	GCAGC	3 cut(s)	4, 427, 606
BseYI	CCCAGC	1 cut(s)	592
BsgI	GTGCAG	1 cut(s)	426
BshFI	GGCC	2 cut(s)	791, 801
BsiHKAI	GWGCWC	1 cut(s)	198
BsiHKCI	CYCGRG	1 cut(s)	762
BsiSI	CCGG	2 cut(s)	77, 200
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	2 cut(s)	180, 228
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	2 cut(s)	791, 801
BsoBI	CYCGRG	1 cut(s)	762
Bsp119I	TTCGAA	1 cut(s)	94
Bsp120I	GGGCCC	1 cut(s)	799
Bsp1286I	GDGCHC	3 cut(s)	198, 599, 803
Bsp143I	GATC	4 cut(s)	327, 468, 766, 816
Bsp1720I	GCTNAGC	1 cut(s)	615
Bsp19I	CCATGG	1 cut(s)	714
BspACI	CCGC	3 cut(s)	351, 559, 796
BspANI	GGCC	2 cut(s)	791, 801
BspCNI	CTCAG	3 cut(s)	628, 664, 775
BspHI	TCATGA	3 cut(s)	429, 456, 705
BspLI	GGNNCC	4 cut(s)	81, 756, 800, 801
BspMAI	CTGCAG	2 cut(s)	13, 837
BspPI	GGATC	1 cut(s)	811
BspT104I	TTCGAA	1 cut(s)	94
BsrBI	CCGCTC	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	414
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	2 cut(s)	337, 714
BssMI	GATC	4 cut(s)	327, 468, 766, 816
BssT1I	CCWWGG	2 cut(s)	337, 714
Bst2UI	CCWGG	1 cut(s)	538
Bst4CI	ACNGT	3 cut(s)	28, 454, 601
Bst6I	CTCTTC	1 cut(s)	272
BstAPI	GCANNNNNTGC	2 cut(s)	17, 411
BstBI	TTCGAA	1 cut(s)	94
BstDEI	CTNAG	3 cut(s)	615, 651, 783
BstDSI	CCRYGG	1 cut(s)	714
BstEII	GGTNACC	1 cut(s)	183
BstF5I	GGATG	2 cut(s)	261, 555
BstKTI	GATC	4 cut(s)	330, 471, 769, 819
BstMBI	GATC	4 cut(s)	327, 468, 766, 816
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 411, 521, 542
BstNI	CCWGG	1 cut(s)	538
BstNSI	RCATGY	1 cut(s)	496
BstPAI	GACNNNNGTC	1 cut(s)	29
BstPI	GGTNACC	1 cut(s)	183
BstSCI	CCNGG	2 cut(s)	198, 536
BstSFI	CTRYAG	3 cut(s)	9, 723, 833
BstSLI	GKGCMC	3 cut(s)	198, 599, 803
BstV1I	GCAGC	3 cut(s)	4, 427, 606
BstX2I	RGATCY	2 cut(s)	766, 816
BstYI	RGATCY	2 cut(s)	766, 816
BsuRI	GGCC	2 cut(s)	791, 801
BtgI	CCRYGG	1 cut(s)	714
BtsCI	GGATG	2 cut(s)	261, 555
BtsIMutI	CAGTG	1 cut(s)	120
CaiI	CAGNNNCTG	1 cut(s)	17
CciI	TCATGA	3 cut(s)	429, 456, 705
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	7 cut(s)	171, 219, 390, 754, 790, 799, 800
Csp6I	GTAC	1 cut(s)	490
CspCI	CAANNNNNGTGG	2 cut(s)	465, 500
CviAII	CATG	6 cut(s)	163, 430, 457, 493, 706, 715
CviJI	RGCY	9 cut(s)	298, 320, 371, 592, 614, 619, 700, 791, 801
CviKI_1	RGCY	9 cut(s)	298, 320, 371, 592, 614, 619, 700, 791, 801
CviQI	GTAC	1 cut(s)	490
DdeI	CTNAG	3 cut(s)	615, 651, 783
DpnI	GATC	4 cut(s)	329, 470, 768, 818
DpnII	GATC	4 cut(s)	327, 468, 766, 816
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Eco130I	CCWWGG	2 cut(s)	337, 714
Eco24I	GRGCYC	1 cut(s)	803
Eco47I	GGWCC	4 cut(s)	171, 219, 390, 754
Eco88I	CYCGRG	1 cut(s)	762
Eco91I	GGTNACC	1 cut(s)	183
EcoO109I	RGGNCCY	3 cut(s)	390, 754, 799
EcoO65I	GGTNACC	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	536
EcoT14I	CCWWGG	2 cut(s)	337, 714
EcoT22I	ATGCAT	1 cut(s)	416
EcoT38I	GRGCYC	1 cut(s)	803
ErhI	CCWWGG	2 cut(s)	337, 714
FaeI	CATG	6 cut(s)	166, 433, 460, 496, 709, 718
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	6 cut(s)	162, 429, 456, 492, 705, 714
FauI	CCCGC	1 cut(s)	789
FauNDI	CATATG	2 cut(s)	410, 547
FbaI	TGATCA	1 cut(s)	468
FblI	GTMKAC	2 cut(s)	255, 647
Fnu4HI	GCNGC	3 cut(s)	18, 441, 620
FokI	GGATG	2 cut(s)	248, 542
FriOI	GRGCYC	1 cut(s)	803
Fsp4HI	GCNGC	3 cut(s)	18, 441, 620
FspBI	CTAG	2 cut(s)	152, 776
GluI	GCNGC	3 cut(s)	18, 441, 620
GsaI	CCCAGC	1 cut(s)	596
HaeIII	GGCC	2 cut(s)	791, 801
HapII	CCGG	2 cut(s)	77, 200
Hin1II	CATG	6 cut(s)	166, 433, 460, 496, 709, 718
HincII	GTYRAC	2 cut(s)	157, 648
HindII	GTYRAC	2 cut(s)	157, 648
HinfI	GANTC	1 cut(s)	649
HpaII	CCGG	2 cut(s)	77, 200
HphI	GGTGA	4 cut(s)	120, 478, 697, 763
Hpy166II	GTNNAC	7 cut(s)	157, 171, 196, 219, 256, 648, 688
Hpy188I	TCNGA	4 cut(s)	24, 283, 697, 738
Hpy188III	TCNNGA	4 cut(s)	430, 457, 706, 752
Hpy8I	GTNNAC	7 cut(s)	157, 171, 196, 219, 256, 648, 688
HpyAV	CCTTC	2 cut(s)	430, 580
HpyCH4III	ACNGT	3 cut(s)	28, 454, 601
HpyCH4V	TGCA	8 cut(s)	11, 146, 162, 196, 414, 443, 545, 835
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 411, 521, 542
HpyF3I	CTNAG	3 cut(s)	615, 651, 783
Hsp92II	CATG	6 cut(s)	166, 433, 460, 496, 709, 718
Ksp22I	TGATCA	1 cut(s)	468
Kzo9I	GATC	4 cut(s)	327, 468, 766, 816
LmnI	GCTCC	1 cut(s)	118
Lsp1109I	GCAGC	3 cut(s)	4, 427, 606
LweI	GCATC	3 cut(s)	4, 414, 721
MaeI	CTAG	2 cut(s)	152, 776
MaeIII	GTNAC	1 cut(s)	183
MalI	GATC	4 cut(s)	329, 470, 768, 818
MbiI	CCGCTC	1 cut(s)	353
MboI	GATC	4 cut(s)	327, 468, 766, 816
MboII	GAAGA	4 cut(s)	115, 259, 826, 835
MflI	RGATCY	2 cut(s)	766, 816
MhlI	GDGCHC	3 cut(s)	198, 599, 803
MluCI	AATT	1 cut(s)	828
MlyI	GAGTC	1 cut(s)	643
MmeI	TCCRAC	2 cut(s)	107, 306
MnlI	CCTC	9 cut(s)	59, 241, 275, 281, 288, 381, 515, 676, 778
Mph1103I	ATGCAT	1 cut(s)	416
MroXI	GAANNNNTTC	1 cut(s)	842
MslI	CAYNNNNRTG	3 cut(s)	212, 431, 461
MspA1I	CMGCKG	1 cut(s)	619
MspI	CCGG	2 cut(s)	77, 200
MspR9I	CCNGG	2 cut(s)	200, 538
MvaI	CCWGG	1 cut(s)	538
MwoI	GCNNNNNNNGC	4 cut(s)	17, 411, 521, 542
NciI	CCSGG	1 cut(s)	200
NcoI	CCATGG	1 cut(s)	714
NdeI	CATATG	2 cut(s)	410, 547
NdeII	GATC	4 cut(s)	327, 468, 766, 816
NlaIII	CATG	6 cut(s)	166, 433, 460, 496, 709, 718
NlaIV	GGNNCC	4 cut(s)	81, 756, 800, 801
NsiI	ATGCAT	1 cut(s)	416
NspI	RCATGY	1 cut(s)	496
NspV	TTCGAA	1 cut(s)	94
OliI	CACNNNNGTG	1 cut(s)	212
PagI	TCATGA	3 cut(s)	429, 456, 705
PdmI	GAANNNNTTC	1 cut(s)	842
PkrI	GCNGC	3 cut(s)	19, 442, 621
PleI	GAGTC	1 cut(s)	643
PpsI	GAGTC	1 cut(s)	643
PpuMI	RGGWCCY	2 cut(s)	390, 754
PshAI	GACNNNNGTC	1 cut(s)	29
Psp5II	RGGWCCY	2 cut(s)	390, 754
Psp6I	CCWGG	1 cut(s)	536
PspEI	GGTNACC	1 cut(s)	183
PspFI	CCCAGC	1 cut(s)	592
PspGI	CCWGG	1 cut(s)	536
PspN4I	GGNNCC	4 cut(s)	81, 756, 800, 801
PspOMI	GGGCCC	1 cut(s)	799
PspPI	GGNCC	7 cut(s)	171, 219, 390, 754, 790, 799, 800
PspPPI	RGGWCCY	2 cut(s)	390, 754
PstI	CTGCAG	2 cut(s)	13, 837
PstNI	CAGNNNCTG	1 cut(s)	17
PsuI	RGATCY	2 cut(s)	766, 816
PvuII	CAGCTG	1 cut(s)	619
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
RseI	CAYNNNNRTG	3 cut(s)	212, 431, 461
SalI	GTCGAC	1 cut(s)	646
SatI	GCNGC	3 cut(s)	18, 441, 620
Sau3AI	GATC	4 cut(s)	327, 468, 766, 816
Sau96I	GGNCC	7 cut(s)	171, 219, 390, 754, 790, 799, 800
SchI	GAGTC	1 cut(s)	643
ScrFI	CCNGG	2 cut(s)	200, 538
SduI	GDGCHC	3 cut(s)	198, 599, 803
SfaNI	GCATC	3 cut(s)	4, 414, 721
SfcI	CTRYAG	3 cut(s)	9, 723, 833
SfuI	TTCGAA	1 cut(s)	94
SinI	GGWCC	4 cut(s)	171, 219, 390, 754
SmiMI	CAYNNNNRTG	3 cut(s)	212, 431, 461
Sse9I	AATT	1 cut(s)	828
SsiI	CCGC	3 cut(s)	351, 559, 796
SspMI	CTAG	2 cut(s)	152, 776
StyD4I	CCNGG	2 cut(s)	198, 536
StyI	CCWWGG	2 cut(s)	337, 714
TaaI	ACNGT	3 cut(s)	28, 454, 601
TaqI	TCGA	3 cut(s)	94, 246, 647
TasI	AATT	1 cut(s)	828
TatI	WGTACW	1 cut(s)	489
TscAI	CASTG	1 cut(s)	120
TseI	GCWGC	3 cut(s)	17, 440, 619
TspDTI	ATGAA	2 cut(s)	473, 562
TspRI	CASTG	1 cut(s)	120
VneI	GTGCAC	1 cut(s)	194
VpaK11BI	GGWCC	4 cut(s)	171, 219, 390, 754
XapI	RAATTY	1 cut(s)	828
XceI	RCATGY	1 cut(s)	496
XmiI	GTMKAC	2 cut(s)	255, 647
XmnI	GAANNNNTTC	1 cut(s)	842
XspI	CTAG	2 cut(s)	152, 776
Zsp2I	ATGCAT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.