Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0010884

Physical Location & Seq

Genomic Coordinates Reverse (-)

12303785 .. 12306940

Gene Structure 3156 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G125100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGTTTCTGCAGATGTTGTTCGAACCGTGATCGGTGTCATAGGAAACGTTATCTCACTCATTCTGTTCCTGTCACCAGTGCCGACTTTTGTTCGAATATGGAAAAAAGGTTCAGTGGAGCAATACTCACCAGCCCCATACCTTGCAACCCTAGCCAACTGCATGGTGTGGGCCCTCTACGGATTGCCTATGGTGCACCCTCACAGTATTTTGGTGGTGACCATCAATGGCTCTGCCATTTTCATTGAGCTTTCCTACATCATCCTCTTCCTCATCTACGCGTCTGACAAGAAGCAGAGGCTCAAAGTGCTTCTGATTTTACTTGTGGAGCTCGTACTCATGGCTCTTCTTGTCCTCACGGTTCTCATTTTGGCCCATACATACGAGAGGAGGTCACTTATTGTGGGCATCGTTTGCATTCTATGTAACATCATGATGTATGCTTCACCTCTCGCTGTCATGAAATTGGTGATTACAACAAAGAGTGTGGAATTCATGCCGTTTTGCCTCTCGTTATTTTCCTTTGCCAACGGTCTTGCCTGGTTTTCATTTGCTCTCATCCGTTTCGACATCTTCTTGACTATTCCCAATGGGCTGGGCTTACTTTTTGGGTCGGGCCAGCTGATTCTCTACGCCACATACTACAAGAATACAAAGAGACTGTTGGCAGAGAGGAAAGCTAGGCAGGTGAGTTTGACAGAGGTGGTTTCCGACGGAGATGAACCCAAAAAGATAGGCAGTACTACTCAGAATGGTAGTGCTCCTCACCACGGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0009507 GO:0009536 GO:0009987 GO:0015144 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0065003 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

260

Amino Acids

28.66

Weight (kDa)

9.37

Isoelectric Point (pI)

36.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66770 AT4G10850
fragaria_vesca	FvH4_5g11560 FvH4_5g11560 FvH4_5g11560
malus_domestica	MD06G1112000.v1.1 MD14G1133400.v1.1
prunus_persica	Prupe.5G125100_v2.0.a1
pyrus_communis	pycom06g10500
rosa_chinensis	RchiOBHm_Chr7g0186191
rosa_laevigata	RLG00000004857
rosa_multiflora	Rmu_sc0009528.1_g000015
rosa_roxburghii	Rroxscaffold_3G00268330
rosa_rugosa	Rorug06G0472600 Rorug06G0472600
rosa_samantha	Rh7AG068800 Rh7BG084700 Rh7CG079300 Rh7DG079600
rosa_wichuraiana	Rw7G006620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	676
Acc36I	ACCTGC	1 cut(s)	676
AccII	CGCG	1 cut(s)	281
AclI	AACGTT	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	491
AfaI	GTAC	2 cut(s)	336, 742
AfiI	CCNNNNNNNGG	1 cut(s)	770
AflIII	ACRYGT	1 cut(s)	279
AjnI	CCWGG	1 cut(s)	539
AloI	GAACNNNNNNTCC	2 cut(s)	94, 126
AluBI	AGCT	4 cut(s)	250, 331, 622, 680
AluI	AGCT	4 cut(s)	250, 331, 622, 680
Alw21I	GWGCWC	3 cut(s)	198, 333, 763
Alw26I	GTCTC	1 cut(s)	652
Alw44I	GTGCAC	1 cut(s)	194
AoxI	GGCC	3 cut(s)	171, 372, 616
ApaI	GGGCCC	1 cut(s)	175
ApaLI	GTGCAC	1 cut(s)	194
ApoI	RAATTY	1 cut(s)	491
AspS9I	GGNCC	4 cut(s)	171, 172, 373, 616
AsuHPI	GGTGA	7 cut(s)	66, 120, 229, 438, 481, 700, 758
AsuII	TTCGAA	2 cut(s)	22, 94
BaeGI	GKGCMC	2 cut(s)	175, 198
BanII	GRGCYC	2 cut(s)	175, 333
Bbv12I	GWGCWC	3 cut(s)	198, 333, 763
BccI	CCATC	1 cut(s)	230
BceAI	ACGGC	1 cut(s)	484
BciT130I	CCWGG	1 cut(s)	541
BcoDI	GTCTC	1 cut(s)	652
BfaI	CTAG	2 cut(s)	152, 681
BfmI	CTRYAG	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	676
BmcAI	AGTACT	1 cut(s)	742
Bme1390I	CCNGG	1 cut(s)	541
BmgT120I	GGNCC	4 cut(s)	171, 172, 373, 616
BmiI	GGNNCC	1 cut(s)	173
BmrFI	CCNGG	1 cut(s)	541
BmsI	GCATC	1 cut(s)	417
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
Bpu14I	TTCGAA	2 cut(s)	22, 94
BsaJI	CCNNGG	1 cut(s)	769
Bsc4I	CCNNNNNNNGG	1 cut(s)	770
Bse1I	ACTGG	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	541
BseDI	CCNNGG	1 cut(s)	769
BseGI	GGATG	2 cut(s)	261, 558
BseLI	CCNNNNNNNGG	1 cut(s)	770
BseMII	CTCAG	1 cut(s)	761
BseNI	ACTGG	1 cut(s)	77
BseRI	GAGGAG	2 cut(s)	403, 753
BseSI	GKGCMC	2 cut(s)	175, 198
BseYI	CCCAGC	1 cut(s)	595
Bsh1236I	CGCG	1 cut(s)	281
BshFI	GGCC	3 cut(s)	173, 374, 618
BsiHKAI	GWGCWC	3 cut(s)	198, 333, 763
BslI	CCNNNNNNNGG	1 cut(s)	770
BsmAI	GTCTC	1 cut(s)	652
BsmI	GAATGC	1 cut(s)	417
BsnI	GGCC	3 cut(s)	173, 374, 618
Bsp119I	TTCGAA	2 cut(s)	22, 94
Bsp120I	GGGCCC	1 cut(s)	171
Bsp1286I	GDGCHC	4 cut(s)	175, 198, 333, 763
Bsp143I	GATC	1 cut(s)	30
BspANI	GGCC	3 cut(s)	173, 374, 618
BspCNI	CTCAG	1 cut(s)	760
BspFNI	CGCG	1 cut(s)	281
BspHI	TCATGA	2 cut(s)	432, 459
BspLI	GGNNCC	1 cut(s)	173
BspMAI	CTGCAG	1 cut(s)	13
BspMI	ACCTGC	1 cut(s)	676
BspQI	GCTCTTC	1 cut(s)	351
BspT104I	TTCGAA	2 cut(s)	22, 94
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	769
BssMI	GATC	1 cut(s)	30
Bst2UI	CCWGG	1 cut(s)	541
Bst4CI	ACNGT	5 cut(s)	28, 206, 361, 533, 663
Bst6I	CTCTTC	2 cut(s)	272, 351
BstAPI	GCANNNNNTGC	1 cut(s)	414
BstBI	TTCGAA	2 cut(s)	22, 94
BstC8I	GCNNGC	1 cut(s)	620
BstDEI	CTNAG	1 cut(s)	747
BstDSI	CCRYGG	1 cut(s)	769
BstEII	GGTNACC	1 cut(s)	217
BstF5I	GGATG	2 cut(s)	261, 558
BstFNI	CGCG	1 cut(s)	281
BstKTI	GATC	1 cut(s)	33
BstMAI	GTCTC	1 cut(s)	652
BstMBI	GATC	1 cut(s)	30
BstMWI	GCNNNNNNNGC	4 cut(s)	152, 193, 307, 414
BstNI	CCWGG	1 cut(s)	541
BstPI	GGTNACC	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	539
BstSFI	CTRYAG	1 cut(s)	9
BstSLI	GKGCMC	2 cut(s)	175, 198
BstUI	CGCG	1 cut(s)	281
BstXI	CCANNNNNNTGG	2 cut(s)	163, 595
BsuRI	GGCC	3 cut(s)	173, 374, 618
BtgI	CCRYGG	1 cut(s)	769
BtsCI	GGATG	2 cut(s)	261, 558
BtsIMutI	CAGTG	2 cut(s)	84, 120
BveI	ACCTGC	1 cut(s)	676
Cac8I	GCNNGC	1 cut(s)	620
CciI	TCATGA	2 cut(s)	432, 459
Cfr13I	GGNCC	4 cut(s)	171, 172, 373, 616
CseI	GACGC	1 cut(s)	270
Csp6I	GTAC	2 cut(s)	335, 741
CspCI	CAANNNNNGTGG	2 cut(s)	468, 503
CviAII	CATG	6 cut(s)	163, 340, 433, 460, 496, 777
CviQI	GTAC	2 cut(s)	335, 741
DdeI	CTNAG	1 cut(s)	747
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
Eam1104I	CTCTTC	2 cut(s)	272, 351
EarI	CTCTTC	2 cut(s)	272, 351
Ecl136II	GAGCTC	1 cut(s)	331
Eco24I	GRGCYC	2 cut(s)	175, 333
Eco53kI	GAGCTC	1 cut(s)	331
Eco91I	GGTNACC	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	331
EcoO109I	RGGNCCY	1 cut(s)	172
EcoO65I	GGTNACC	1 cut(s)	217
EcoRI	GAATTC	1 cut(s)	491
EcoRII	CCWGG	1 cut(s)	539
EcoT38I	GRGCYC	2 cut(s)	175, 333
FaeI	CATG	6 cut(s)	166, 343, 436, 463, 499, 780
FatI	CATG	6 cut(s)	162, 339, 432, 459, 495, 776
FokI	GGATG	2 cut(s)	248, 545
FriOI	GRGCYC	2 cut(s)	175, 333
FspBI	CTAG	2 cut(s)	152, 681
GsaI	CCCAGC	1 cut(s)	599
HaeIII	GGCC	3 cut(s)	173, 374, 618
HgaI	GACGC	1 cut(s)	270
Hin1II	CATG	6 cut(s)	166, 343, 436, 463, 499, 780
HinfI	GANTC	1 cut(s)	625
HphI	GGTGA	7 cut(s)	66, 120, 229, 438, 481, 700, 758
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	4 cut(s)	286, 315, 712, 750
Hpy188III	TCNNGA	3 cut(s)	433, 460, 577
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	1 cut(s)	716
HpyCH4III	ACNGT	5 cut(s)	28, 206, 361, 533, 663
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	5 cut(s)	11, 146, 162, 196, 417
HpyF10VI	GCNNNNNNNGC	4 cut(s)	152, 193, 307, 414
HpyF3I	CTNAG	1 cut(s)	747
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	6 cut(s)	166, 343, 436, 463, 499, 780
Kzo9I	GATC	1 cut(s)	30
LguI	GCTCTTC	1 cut(s)	351
LmnI	GCTCC	3 cut(s)	118, 328, 766
LpnPI	CCDG	8 cut(s)	83, 90, 144, 526, 553, 581, 632, 671
LweI	GCATC	1 cut(s)	417
MaeI	CTAG	2 cut(s)	152, 681
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	4 cut(s)	72, 217, 393, 425
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	3 cut(s)	259, 338, 565
MhlI	GDGCHC	4 cut(s)	175, 198, 333, 763
MluCI	AATT	2 cut(s)	464, 491
MluI	ACGCGT	1 cut(s)	279
MmeI	TCCRAC	1 cut(s)	735
MslI	CAYNNNNRTG	1 cut(s)	434
MspA1I	CMGCKG	1 cut(s)	622
MspR9I	CCNGG	1 cut(s)	541
Mva1269I	GAATGC	1 cut(s)	417
MvaI	CCWGG	1 cut(s)	541
MvnI	CGCG	1 cut(s)	281
MwoI	GCNNNNNNNGC	4 cut(s)	152, 193, 307, 414
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	6 cut(s)	166, 343, 436, 463, 499, 780
NlaIV	GGNNCC	1 cut(s)	173
NmuCI	GTSAC	3 cut(s)	72, 217, 393
NspV	TTCGAA	2 cut(s)	22, 94
PagI	TCATGA	2 cut(s)	432, 459
PaqCI	CACCTGC	1 cut(s)	676
PciSI	GCTCTTC	1 cut(s)	351
PctI	GAATGC	1 cut(s)	417
PfeI	GAWTC	1 cut(s)	625
Psp124BI	GAGCTC	1 cut(s)	333
Psp1406I	AACGTT	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	539
PspEI	GGTNACC	1 cut(s)	217
PspFI	CCCAGC	1 cut(s)	595
PspGI	CCWGG	1 cut(s)	539
PspN4I	GGNNCC	1 cut(s)	173
PspOMI	GGGCCC	1 cut(s)	171
PspPI	GGNCC	4 cut(s)	171, 172, 373, 616
PstI	CTGCAG	1 cut(s)	13
PvuII	CAGCTG	1 cut(s)	622
RsaI	GTAC	2 cut(s)	336, 742
RsaNI	GTAC	2 cut(s)	335, 741
RseI	CAYNNNNRTG	1 cut(s)	434
SacI	GAGCTC	1 cut(s)	333
SapI	GCTCTTC	1 cut(s)	351
Sau3AI	GATC	1 cut(s)	30
Sau96I	GGNCC	4 cut(s)	171, 172, 373, 616
ScaI	AGTACT	1 cut(s)	742
ScrFI	CCNGG	1 cut(s)	541
SduI	GDGCHC	4 cut(s)	175, 198, 333, 763
SfaNI	GCATC	1 cut(s)	417
SfcI	CTRYAG	1 cut(s)	9
SfuI	TTCGAA	2 cut(s)	22, 94
SmiMI	CAYNNNNRTG	1 cut(s)	434
Sse9I	AATT	2 cut(s)	464, 491
SspMI	CTAG	2 cut(s)	152, 681
SstI	GAGCTC	1 cut(s)	333
StyD4I	CCNGG	1 cut(s)	539
TaaI	ACNGT	5 cut(s)	28, 206, 361, 533, 663
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	3 cut(s)	22, 94, 567
TasI	AATT	2 cut(s)	464, 491
TatI	WGTACW	1 cut(s)	740
TfiI	GAWTC	1 cut(s)	625
TscAI	CASTG	2 cut(s)	84, 120
TseFI	GTSAC	3 cut(s)	72, 217, 393
Tsp45I	GTSAC	3 cut(s)	72, 217, 393
TspDTI	ATGAA	5 cut(s)	232, 476, 484, 537, 735
TspGWI	ACGGA	3 cut(s)	195, 551, 729
TspRI	CASTG	2 cut(s)	84, 120
VneI	GTGCAC	1 cut(s)	194
XapI	RAATTY	1 cut(s)	491
XspI	CTAG	2 cut(s)	152, 681
ZrmI	AGTACT	1 cut(s)	742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.