FvH4_5g11670

RING-H2 zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015493
Physical Location & Seq
Forward (+)
6609486 .. 6612138
2653 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g11670.t1

Sequence Viewer

Length: 813 bp
ATGGCTCTTCCTGATCAATCTCAAACTACCAGTTCTAATACTACTTCTCAATCTCACCTTTACCCTCAAGCACTCCAACTCAAACTTTATCAGGCCTTCATATTCTCGATTCCTATTCTTTTCTCGATCATTCTCTTCCTCTTGTTCTACTTGTTCTACCTCAAAAGAAGGGCTTCCACTCTTCAATCTTCTCCTCCAATTCTCATTCGAAGAAGAAGCCCTAATCAAGCTTCAGCACCTTCACAATATGTTTCCTCACCGTGTCCAATGGATTTGAAGGGAGAGCTCAAAGAGAAGCTTCAGATCATACTCTTCGATGAAGAATTGATGAAAAAGGACTCCCAATGTTGTGTTTGCTTGGGGGAATTTGAAATGGAAGAGGAGCTACTGCAGGTTCAATCGTGCAAACATGTCTTCCATGTCGATTGCATACATCACTGGCTGCATAACAACACAACCTGCCCCCTTTGCAGATGCTCGGTGATTCCGATTAGTACGAGTACCAAACTCGATACTAGTAATCCGGCACTATTAACTGTTAGTACCACCGCTTTAACGGAGCCACCTGCACAACAACTCCAGCAGCACCATAGCATAGTAGTCTCCCACCAGAGTCCCGGGATAGTATCATTAGAGCTACGTCAACAGCAACAGATGGAGAATAACGTAGCTCCAAATGGGACAGCACCGATTGGAGAAGAATCATCATCAACTGCAGGGACCGGTGGTTCAACTTTAAGGGACTCTGGGTGTTCTAGTACTAGTGATCGAGATTTGGGAGACTCGGTTACTATTCATATCCAAGACGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

271

Amino Acids

29.87

Weight (kDa)

5.77

Isoelectric Point (pI)

73.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 115 - 158 3e-12 Ring finger domain
zf-RING_11 PF17123 115 - 144 6.3e-08 RING-like zinc finger
zf-C3HC4_2 PF13923 115 - 157 1.1e-06 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 116 - 158 1.5e-08 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015493)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24015
fragaria_vesca FvH4_5g11670
malus_domestica MD06G1111300.v1.1 MD14G1132500.v1.1
prunus_persica Prupe.5G124100_v2.0.a1
pyrus_communis pycom06g10430
rosa_chinensis RchiOBHm_Chr7g0186121
rosa_laevigata RLG00000004862
rosa_multiflora Rmu_sc0000194.1_g000030
rosa_roxburghii Rroxscaffold_3G00268410
rosa_rugosa Rorug06G0472200
rosa_samantha Rh7AG069400 Rh7BG085400 Rh7CG078700 Rh7DG078800
rosa_wichuraiana Rw7G006550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 574
Acc36I ACCTGC 3 cut(s) 382, 467, 574
AciI CCGC 1 cut(s) 549
AcsI RAATTY 1 cut(s) 365
AcuI CTGAAG 2 cut(s) 216, 284
AfaI GTAC 4 cut(s) 496, 502, 544, 760
AflIII ACRYGT 1 cut(s) 409
AgeI ACCGGT 1 cut(s) 722
AgsI TTSAA 5 cut(s) 185, 277, 371, 398, 732
AhlI ACTAGT 2 cut(s) 515, 761
AloI GAACNNNNNNTCC 2 cut(s) 712, 744
AluBI AGCT 6 cut(s) 230, 286, 298, 385, 637, 671
AluI AGCT 6 cut(s) 230, 286, 298, 385, 637, 671
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 2 cut(s) 607, 774
Ama87I CYCGRG 1 cut(s) 617
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 2 cut(s) 442, 583
ApoI RAATTY 1 cut(s) 365
AsiGI ACCGGT 1 cut(s) 722
Asp700I GAANNNNTTC 1 cut(s) 172
AspS9I GGNCC 1 cut(s) 720
AsuC2I CCSGG 2 cut(s) 618, 619
AsuHPI GGTGA 3 cut(s) 47, 249, 493
AsuII TTCGAA 1 cut(s) 208
AvaI CYCGRG 1 cut(s) 617
AvaII GGWCC 1 cut(s) 720
BanII GRGCYC 1 cut(s) 288
BarI GAAGNNNNNNTAC 2 cut(s) 369, 401
BbsI GAAGAC 1 cut(s) 406
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 2 cut(s) 429, 595
BccI CCATC 1 cut(s) 649
BclI TGATCA 1 cut(s) 13
BcnI CCSGG 2 cut(s) 618, 619
BcoDI GTCTC 2 cut(s) 607, 774
BcuI ACTAGT 2 cut(s) 515, 761
BfaI CTAG 3 cut(s) 516, 756, 762
BfmI CTRYAG 2 cut(s) 389, 714
BfuAI ACCTGC 3 cut(s) 382, 467, 574
BisI GCNGC 2 cut(s) 443, 584
BlsI GCNGC 2 cut(s) 444, 585
BmcAI AGTACT 1 cut(s) 760
Bme1390I CCNGG 2 cut(s) 618, 619
Bme18I GGWCC 1 cut(s) 720
BmeT110I CYCGRG 1 cut(s) 617
BmgT120I GGNCC 1 cut(s) 720
BmiI GGNNCC 2 cut(s) 561, 721
BmrFI CCNGG 2 cut(s) 618, 619
BmsI GCATC 1 cut(s) 464
BpiI GAAGAC 1 cut(s) 406
BpmI CTGGAG 1 cut(s) 563
Bpu14I TTCGAA 1 cut(s) 208
BpuEI CTTGAG 1 cut(s) 51
BpuMI CCSGG 2 cut(s) 618, 619
BsaJI CCNNGG 1 cut(s) 617
BsaWI WCCGGW 1 cut(s) 722
BsaXI ACNNNNNCTCC 4 cut(s) 561, 591, 771, 801
Bse118I RCCGGY 1 cut(s) 722
Bse1I ACTGG 2 cut(s) 30, 443
BseDI CCNNGG 1 cut(s) 617
BseNI ACTGG 2 cut(s) 30, 443
BseRI GAGGAG 2 cut(s) 183, 395
BseXI GCAGC 2 cut(s) 429, 595
BsgI GTGCAG 1 cut(s) 552
BshFI GGCC 1 cut(s) 95
BshTI ACCGGT 1 cut(s) 722
BsiHKAI GWGCWC 1 cut(s) 288
BsiHKCI CYCGRG 1 cut(s) 617
BsiSI CCGG 3 cut(s) 524, 618, 723
BslFI GGGAC 4 cut(s) 600, 694, 733, 755
BsmAI GTCTC 2 cut(s) 607, 774
BsmFI GGGAC 4 cut(s) 600, 694, 733, 755
BsnI GGCC 1 cut(s) 95
BsoBI CYCGRG 1 cut(s) 617
Bsp119I TTCGAA 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 4 cut(s) 13, 126, 303, 766
BspACI CCGC 1 cut(s) 549
BspANI GGCC 1 cut(s) 95
BspLI GGNNCC 2 cut(s) 561, 721
BspMAI CTGCAG 2 cut(s) 393, 718
BspMI ACCTGC 3 cut(s) 382, 467, 574
BspQI GCTCTTC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 208
BsrFI RCCGGY 1 cut(s) 722
BsrI ACTGG 2 cut(s) 30, 443
BssAI RCCGGY 1 cut(s) 722
BssECI CCNNGG 1 cut(s) 617
BssMI GATC 4 cut(s) 13, 126, 303, 766
Bst4CI ACNGT 2 cut(s) 261, 538
Bst6I CTCTTC 5 cut(s) 12, 140, 186, 317, 372
BstBI TTCGAA 1 cut(s) 208
BstKTI GATC 4 cut(s) 16, 129, 306, 769
BstMAI GTCTC 2 cut(s) 607, 774
BstMBI GATC 4 cut(s) 13, 126, 303, 766
BstMWI GCNNNNNNNGC 1 cut(s) 468
BstNSI RCATGY 1 cut(s) 413
BstSCI CCNGG 2 cut(s) 616, 617
BstSFI CTRYAG 2 cut(s) 389, 714
BstV1I GCAGC 2 cut(s) 429, 595
BstV2I GAAGAC 1 cut(s) 406
BsuRI GGCC 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 436
BveI ACCTGC 3 cut(s) 382, 467, 574
Cfr10I RCCGGY 1 cut(s) 722
Cfr13I GGNCC 1 cut(s) 720
Cfr9I CCCGGG 1 cut(s) 617
Csp6I GTAC 4 cut(s) 495, 501, 543, 759
CspAI ACCGGT 1 cut(s) 722
CviAII CATG 2 cut(s) 410, 419
CviQI GTAC 4 cut(s) 495, 501, 543, 759
DpnI GATC 4 cut(s) 15, 128, 305, 768
DpnII GATC 4 cut(s) 13, 126, 303, 766
Eam1104I CTCTTC 5 cut(s) 12, 140, 186, 317, 372
EarI CTCTTC 5 cut(s) 12, 140, 186, 317, 372
Ecl136II GAGCTC 1 cut(s) 286
Eco147I AGGCCT 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 720
Eco53kI GAGCTC 1 cut(s) 286
Eco57I CTGAAG 2 cut(s) 216, 284
Eco88I CYCGRG 1 cut(s) 617
EcoICRI GAGCTC 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 288
FaeI CATG 2 cut(s) 413, 422
FalI AAGNNNNNCTT 4 cut(s) 157, 189, 282, 314
FaqI GGGAC 4 cut(s) 600, 694, 733, 755
FatI CATG 2 cut(s) 409, 418
FbaI TGATCA 1 cut(s) 13
Fnu4HI GCNGC 2 cut(s) 443, 584
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 2 cut(s) 443, 584
FspBI CTAG 3 cut(s) 516, 756, 762
GluI GCNGC 2 cut(s) 443, 584
GsuI CTGGAG 1 cut(s) 563
HaeIII GGCC 1 cut(s) 95
HapII CCGG 3 cut(s) 524, 618, 723
Hin1II CATG 2 cut(s) 413, 422
HincII GTYRAC 1 cut(s) 644
HindII GTYRAC 1 cut(s) 644
HindIII AAGCTT 2 cut(s) 228, 296
HinfI GANTC 7 cut(s) 109, 338, 484, 613, 701, 743, 782
HpaII CCGG 3 cut(s) 524, 618, 723
HphI GGTGA 3 cut(s) 47, 249, 493
Hpy166II GTNNAC 1 cut(s) 644
Hpy188I TCNGA 2 cut(s) 303, 489
Hpy188III TCNNGA 4 cut(s) 11, 106, 124, 770
Hpy8I GTNNAC 1 cut(s) 644
HpyAV CCTTC 4 cut(s) 106, 162, 249, 271
HpyCH4III ACNGT 2 cut(s) 261, 538
HpyCH4IV ACGT 3 cut(s) 640, 666, 807
HpyCH4V TGCA 7 cut(s) 391, 405, 429, 445, 471, 569, 716
HpyF10VI GCNNNNNNNGC 1 cut(s) 468
HpySE526I ACGT 3 cut(s) 640, 666, 807
Hsp92II CATG 2 cut(s) 413, 422
Ksp22I TGATCA 1 cut(s) 13
Kzo9I GATC 4 cut(s) 13, 126, 303, 766
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 3 cut(s) 382, 559, 676
Lsp1109I GCAGC 2 cut(s) 429, 595
LweI GCATC 1 cut(s) 464
MaeI CTAG 3 cut(s) 516, 756, 762
MaeII ACGT 3 cut(s) 640, 666, 807
MaeIII GTNAC 1 cut(s) 787
MalI GATC 4 cut(s) 15, 128, 305, 768
MboI GATC 4 cut(s) 13, 126, 303, 766
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 3 cut(s) 198, 323, 365
MlyI GAGTC 4 cut(s) 332, 622, 737, 776
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 6 cut(s) 75, 149, 170, 204, 265, 373
MroXI GAANNNNTTC 1 cut(s) 172
MseI TTAA 4 cut(s) 533, 554, 737, 811
MspI CCGG 3 cut(s) 524, 618, 723
MspR9I CCNGG 2 cut(s) 618, 619
MwoI GCNNNNNNNGC 1 cut(s) 468
NciI CCSGG 2 cut(s) 618, 619
NdeII GATC 4 cut(s) 13, 126, 303, 766
NlaIII CATG 2 cut(s) 413, 422
NlaIV GGNNCC 2 cut(s) 561, 721
NspI RCATGY 1 cut(s) 413
NspV TTCGAA 1 cut(s) 208
PaqCI CACCTGC 1 cut(s) 574
PceI AGGCCT 1 cut(s) 95
PciI ACATGT 1 cut(s) 409
PciSI GCTCTTC 1 cut(s) 12
PcsI WCGNNNNNNNCGW 1 cut(s) 485
PdmI GAANNNNTTC 1 cut(s) 172
PfeI GAWTC 3 cut(s) 109, 484, 701
PinAI ACCGGT 1 cut(s) 722
PkrI GCNGC 2 cut(s) 444, 585
PleI GAGTC 4 cut(s) 332, 621, 737, 776
PpsI GAGTC 4 cut(s) 332, 621, 737, 776
PscI ACATGT 1 cut(s) 409
Psp124BI GAGCTC 1 cut(s) 288
PspN4I GGNNCC 2 cut(s) 561, 721
PspPI GGNCC 1 cut(s) 720
PstI CTGCAG 2 cut(s) 393, 718
RsaI GTAC 4 cut(s) 496, 502, 544, 760
RsaNI GTAC 4 cut(s) 495, 501, 543, 759
SacI GAGCTC 1 cut(s) 288
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 4 cut(s) 533, 554, 737, 811
SatI GCNGC 2 cut(s) 443, 584
Sau3AI GATC 4 cut(s) 13, 126, 303, 766
Sau96I GGNCC 1 cut(s) 720
ScaI AGTACT 1 cut(s) 760
SchI GAGTC 4 cut(s) 332, 622, 737, 776
ScrFI CCNGG 2 cut(s) 618, 619
SduI GDGCHC 1 cut(s) 288
SfaNI GCATC 1 cut(s) 464
SfcI CTRYAG 2 cut(s) 389, 714
SfuI TTCGAA 1 cut(s) 208
SinI GGWCC 1 cut(s) 720
SmaI CCCGGG 1 cut(s) 619
SmlI CTYRAG 1 cut(s) 66
SmoI CTYRAG 1 cut(s) 66
SpeI ACTAGT 2 cut(s) 515, 761
Sse9I AATT 3 cut(s) 198, 323, 365
SseBI AGGCCT 1 cut(s) 95
SsiI CCGC 1 cut(s) 549
SspMI CTAG 3 cut(s) 516, 756, 762
SstI GAGCTC 1 cut(s) 288
StuI AGGCCT 1 cut(s) 95
StyD4I CCNGG 2 cut(s) 616, 617
TaaI ACNGT 2 cut(s) 261, 538
TaiI ACGT 3 cut(s) 643, 669, 810
TaqI TCGA 7 cut(s) 107, 125, 208, 315, 423, 510, 769
TasI AATT 3 cut(s) 198, 323, 365
TatI WGTACW 1 cut(s) 758
TfiI GAWTC 3 cut(s) 109, 484, 701
Tru1I TTAA 4 cut(s) 533, 554, 737, 811
Tru9I TTAA 4 cut(s) 533, 554, 737, 811
TscAI CASTG 1 cut(s) 443
TseI GCWGC 2 cut(s) 442, 583
TspDTI ATGAA 4 cut(s) 88, 333, 344, 785
TspGWI ACGGA 1 cut(s) 572
TspMI CCCGGG 1 cut(s) 617
TspRI CASTG 1 cut(s) 443
VpaK11BI GGWCC 1 cut(s) 720
XapI RAATTY 1 cut(s) 365
XceI RCATGY 1 cut(s) 413
XmaI CCCGGG 1 cut(s) 617
XmnI GAANNNNTTC 1 cut(s) 172
XspI CTAG 3 cut(s) 516, 756, 762
ZrmI AGTACT 1 cut(s) 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.