Prupe.5G124100_v2.0.a1

RING-H2 zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0015493
Physical Location & Seq
Reverse (-)
12246253 .. 12248538
2286 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G124100.1

Sequence Viewer

Length: 780 bp
ATGAGTAGTCTTCCTCAAACTCCAGCCAGTTCTACCAATTCTCACCTTTATCCTCAAGCTCTCCAACTTAAACTTTACCAGGCCTTCATTTTCTCAATTCCTATCCTTTTCTCCATCATTCTCTTTCTTTTGTTCTACTTGTTCTACCTCAAAAGGAGAGCCTCCACTCTCTCATCTTCTCCACCAATTCTTCCCAGAAGTTATCAGGACCAATCTGCAGCTACCACATATCATGTTTCTTCTGATTGTCCTGTGGGTTTGAAGGGGGAGCTGAAAGAGAAGCTTCAGACAATTTTATTTGATGAAGAACAGAGGAAAAAGGATGCACAATGCTGTGTTTGCTTGGGAGATTTCGAAATGGAAGAGGAGTTGCTGCAGGTTATATCGTGCAGACACGTGTTTCATGTTGATTGCATACATCACTGGCTACACAACAACACAACTTGCCCACTTTGTAGATGCTCTGTGATCCCCATCAGTACCAAGCTTGATAGTCCTGCACTACAGGCACTACCTAGTGTGTCCAGTCCAGGACAGCACAACCCTAGCATAATAGTCTCCAACCATAGTCCTGGGATTATATTATTGGACCGACCACATCAACAACAGCATCAATTGGTCAGTAATGTTACTTCAAATGTAACAACACCAGTTGAGGGTTCGTCAAGTGAGGGTCGGGGTGCAATTTTGAGGGACTCTGGCATGTCATCTGGGCATTATACTAATGAAGATTTGAGAGAGCCAGTTGTTGTGTGTATCCAAACGCACGATTTGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

260

Amino Acids

28.8

Weight (kDa)

6.2

Isoelectric Point (pI)

68.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015493)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24015
fragaria_vesca FvH4_5g11670
malus_domestica MD06G1111300.v1.1 MD14G1132500.v1.1
prunus_persica Prupe.5G124100_v2.0.a1
pyrus_communis pycom06g10430
rosa_chinensis RchiOBHm_Chr7g0186121
rosa_laevigata RLG00000004862
rosa_multiflora Rmu_sc0000194.1_g000030
rosa_roxburghii Rroxscaffold_3G00268410
rosa_rugosa Rorug06G0472200
rosa_samantha Rh7AG069400 Rh7BG085400 Rh7CG078700 Rh7DG078800
rosa_wichuraiana Rw7G006550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 367
AclWI GGATC 1 cut(s) 463
AcuI CTGAAG 1 cut(s) 269
AcvI CACGTG 1 cut(s) 397
AfaI GTAC 1 cut(s) 481
AfiI CCNNNNNNNGG 1 cut(s) 656
AflIII ACRYGT 2 cut(s) 394, 396
AgsI TTSAA 2 cut(s) 262, 636
AjnI CCWGG 3 cut(s) 78, 529, 571
AluBI AGCT 5 cut(s) 59, 221, 271, 283, 487
AluI AGCT 5 cut(s) 59, 221, 271, 283, 487
Alw26I GTCTC 1 cut(s) 562
AlwI GGATC 1 cut(s) 463
AoxI GGCC 1 cut(s) 81
ApeKI GCWGC 2 cut(s) 218, 373
AspS9I GGNCC 2 cut(s) 208, 589
AsuHPI GGTGA 1 cut(s) 35
AsuII TTCGAA 1 cut(s) 354
AvaII GGWCC 2 cut(s) 208, 589
BarI GAAGNNNNNNTAC 2 cut(s) 616, 648
BbrPI CACGTG 1 cut(s) 397
BbsI GAAGAC 1 cut(s) 2
BbvI GCAGC 2 cut(s) 230, 360
BccI CCATC 2 cut(s) 122, 482
BciT130I CCWGG 3 cut(s) 80, 531, 573
BciVI GTATCC 1 cut(s) 767
BcoDI GTCTC 1 cut(s) 562
BfaI CTAG 2 cut(s) 516, 546
BfmI CTRYAG 3 cut(s) 216, 374, 503
BfuAI ACCTGC 1 cut(s) 367
BfuI GTATCC 1 cut(s) 767
BisI GCNGC 2 cut(s) 219, 374
BlsI GCNGC 2 cut(s) 220, 375
Bme1390I CCNGG 3 cut(s) 80, 531, 573
Bme18I GGWCC 2 cut(s) 208, 589
BmgT120I GGNCC 2 cut(s) 208, 589
BmrFI CCNGG 3 cut(s) 80, 531, 573
BmsI GCATC 3 cut(s) 313, 449, 619
BpiI GAAGAC 1 cut(s) 2
BpmI CTGGAG 1 cut(s) 6
Bpu14I TTCGAA 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 39
BsaAI YACGTR 1 cut(s) 397
BsaBI GATNNNNATC 1 cut(s) 473
BsaJI CCNNGG 1 cut(s) 572
Bsc4I CCNNNNNNNGG 1 cut(s) 656
Bse1I ACTGG 5 cut(s) 27, 428, 525, 650, 743
Bse8I GATNNNNATC 1 cut(s) 473
BseBI CCWGG 3 cut(s) 80, 531, 573
BseDI CCNNGG 1 cut(s) 572
BseGI GGATG 1 cut(s) 328
BseJI GATNNNNATC 1 cut(s) 473
BseLI CCNNNNNNNGG 1 cut(s) 656
BseNI ACTGG 5 cut(s) 27, 428, 525, 650, 743
BseRI GAGGAG 1 cut(s) 380
BseXI GCAGC 2 cut(s) 230, 360
BsgI GTGCAG 2 cut(s) 409, 483
BshFI GGCC 1 cut(s) 83
BslFI GGGAC 1 cut(s) 707
BslI CCNNNNNNNGG 1 cut(s) 656
BsmAI GTCTC 1 cut(s) 562
BsmFI GGGAC 1 cut(s) 707
BsnI GGCC 1 cut(s) 83
Bsp119I TTCGAA 1 cut(s) 354
Bsp143I GATC 1 cut(s) 468
BspANI GGCC 1 cut(s) 83
BspHI TCATGA 1 cut(s) 776
BspMAI CTGCAG 2 cut(s) 220, 378
BspMI ACCTGC 1 cut(s) 367
BspPI GGATC 1 cut(s) 463
BspT104I TTCGAA 1 cut(s) 354
BsrI ACTGG 5 cut(s) 27, 428, 525, 650, 743
BssECI CCNNGG 1 cut(s) 572
BssMI GATC 1 cut(s) 468
Bst2UI CCWGG 3 cut(s) 80, 531, 573
Bst6I CTCTTC 1 cut(s) 357
BstBAI YACGTR 1 cut(s) 397
BstBI TTCGAA 1 cut(s) 354
BstF5I GGATG 1 cut(s) 328
BstKTI GATC 1 cut(s) 471
BstMAI GTCTC 1 cut(s) 562
BstMBI GATC 1 cut(s) 468
BstMWI GCNNNNNNNGC 2 cut(s) 339, 506
BstNI CCWGG 3 cut(s) 80, 531, 573
BstNSI RCATGY 1 cut(s) 706
BstSCI CCNGG 3 cut(s) 78, 529, 571
BstSFI CTRYAG 3 cut(s) 216, 374, 503
BstV1I GCAGC 2 cut(s) 230, 360
BstV2I GAAGAC 1 cut(s) 2
BstXI CCANNNNNNTGG 1 cut(s) 572
BsuI GTATCC 1 cut(s) 767
BsuRI GGCC 1 cut(s) 83
BtsCI GGATG 1 cut(s) 328
BtsIMutI CAGTG 1 cut(s) 421
BveI ACCTGC 1 cut(s) 367
CciI TCATGA 1 cut(s) 776
Cfr13I GGNCC 2 cut(s) 208, 589
Csp6I GTAC 1 cut(s) 480
CviAII CATG 4 cut(s) 233, 404, 703, 777
CviQI GTAC 1 cut(s) 480
DpnI GATC 1 cut(s) 470
DpnII GATC 1 cut(s) 468
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
Eco147I AGGCCT 1 cut(s) 83
Eco47I GGWCC 2 cut(s) 208, 589
Eco57I CTGAAG 1 cut(s) 269
Eco72I CACGTG 1 cut(s) 397
EcoRII CCWGG 3 cut(s) 78, 529, 571
FaeI CATG 4 cut(s) 236, 407, 706, 780
FalI AAGNNNNNCTT 2 cut(s) 267, 299
FaqI GGGAC 1 cut(s) 707
FatI CATG 4 cut(s) 232, 403, 702, 776
Fnu4HI GCNGC 2 cut(s) 219, 374
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 2 cut(s) 219, 374
FspBI CTAG 2 cut(s) 516, 546
GluI GCNGC 2 cut(s) 219, 374
GsuI CTGGAG 1 cut(s) 6
HaeIII GGCC 1 cut(s) 83
Hin1II CATG 4 cut(s) 236, 407, 706, 780
HindIII AAGCTT 2 cut(s) 281, 485
HinfI GANTC 1 cut(s) 695
HphI GGTGA 1 cut(s) 35
Hpy188I TCNGA 2 cut(s) 244, 288
Hpy188III TCNNGA 2 cut(s) 206, 777
HpyAV CCTTC 2 cut(s) 94, 256
HpyCH4IV ACGT 1 cut(s) 396
HpyCH4V TGCA 7 cut(s) 218, 326, 376, 390, 414, 500, 683
HpyF10VI GCNNNNNNNGC 2 cut(s) 339, 506
HpySE526I ACGT 1 cut(s) 396
Hsp92II CATG 4 cut(s) 236, 407, 706, 780
Kzo9I GATC 1 cut(s) 468
LmnI GCTCC 1 cut(s) 268
Lsp1109I GCAGC 2 cut(s) 230, 360
LweI GCATC 3 cut(s) 313, 449, 619
MaeI CTAG 2 cut(s) 516, 546
MaeII ACGT 1 cut(s) 396
MaeIII GTNAC 2 cut(s) 628, 640
MalI GATC 1 cut(s) 470
MboI GATC 1 cut(s) 468
MboII GAAGA 6 cut(s) 168, 182, 231, 317, 374, 740
MfeI CAATTG 1 cut(s) 614
MluCI AATT 6 cut(s) 37, 96, 186, 291, 614, 684
MlyI GAGTC 1 cut(s) 689
MmeI TCCRAC 2 cut(s) 88, 585
MnlI CCTC 9 cut(s) 24, 63, 158, 172, 306, 358, 649, 664, 684
MseI TTAA 1 cut(s) 69
MspR9I CCNGG 3 cut(s) 80, 531, 573
MunI CAATTG 1 cut(s) 614
MvaI CCWGG 3 cut(s) 80, 531, 573
MwoI GCNNNNNNNGC 2 cut(s) 339, 506
NdeII GATC 1 cut(s) 468
NlaIII CATG 4 cut(s) 236, 407, 706, 780
NspI RCATGY 1 cut(s) 706
NspV TTCGAA 1 cut(s) 354
PagI TCATGA 1 cut(s) 776
PceI AGGCCT 1 cut(s) 83
PfoI TCCNGGA 1 cut(s) 529
PkrI GCNGC 2 cut(s) 220, 375
PleI GAGTC 1 cut(s) 689
PmaCI CACGTG 1 cut(s) 397
PmlI CACGTG 1 cut(s) 397
PpsI GAGTC 1 cut(s) 689
Ppu21I YACGTR 1 cut(s) 397
Psp6I CCWGG 3 cut(s) 78, 529, 571
PspCI CACGTG 1 cut(s) 397
PspGI CCWGG 3 cut(s) 78, 529, 571
PspPI GGNCC 2 cut(s) 208, 589
PstI CTGCAG 2 cut(s) 220, 378
RsaI GTAC 1 cut(s) 481
RsaNI GTAC 1 cut(s) 480
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 2 cut(s) 219, 374
Sau3AI GATC 1 cut(s) 468
Sau96I GGNCC 2 cut(s) 208, 589
SchI GAGTC 1 cut(s) 689
ScrFI CCNGG 3 cut(s) 80, 531, 573
SfaNI GCATC 3 cut(s) 313, 449, 619
SfcI CTRYAG 3 cut(s) 216, 374, 503
SfuI TTCGAA 1 cut(s) 354
SinI GGWCC 2 cut(s) 208, 589
SmlI CTYRAG 1 cut(s) 54
SmoI CTYRAG 1 cut(s) 54
Sse9I AATT 6 cut(s) 37, 96, 186, 291, 614, 684
SseBI AGGCCT 1 cut(s) 83
SspMI CTAG 2 cut(s) 516, 546
StuI AGGCCT 1 cut(s) 83
StyD4I CCNGG 3 cut(s) 78, 529, 571
TaiI ACGT 1 cut(s) 399
TaqI TCGA 1 cut(s) 354
TaqII GACCGA 1 cut(s) 606
TasI AATT 6 cut(s) 37, 96, 186, 291, 614, 684
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TscAI CASTG 1 cut(s) 428
TseI GCWGC 2 cut(s) 218, 373
TspDTI ATGAA 4 cut(s) 76, 318, 392, 741
TspRI CASTG 1 cut(s) 428
VpaK11BI GGWCC 2 cut(s) 208, 589
XceI RCATGY 1 cut(s) 706
XspI CTAG 2 cut(s) 516, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.