Rmu_sc0000194.1_g000030

RING-H2 zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000194.1
OG0015493
Physical Location & Seq
Reverse (-)
120551 .. 121009
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000194.1_g000030.1.cds

Sequence Viewer

Length: 459 bp
atggaagaggagctactgcaggttcaatcgtgcaaacatgtcttccatgtcgattgcatacatcactggctgcacaacaatacaacctgccccctttgcagatgctcggtgatttcgattagtatgagtaccaaactcgatagtaatccggcaccagtaactgttagtaccaccgtgtcaacggagccagctgcacaacaactccagcagcaccatagcatagtagtctcccaccacagtcctgggatagtatcgttggagctacgacaacaccaggaacaacagcaacagatggacaattacaattacgtagcttcaaatgtgacaacaccggttggagaagagtcatcatcaatcacggggactggtactggttcaactttaagggactctgggtgttctagtactagtgatcgagatttgggagactcggttactatttatatccgagacgtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

152

Amino Acids

16.66

Weight (kDa)

5.41

Isoelectric Point (pI)

55.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015493)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24015
fragaria_vesca FvH4_5g11670
malus_domestica MD06G1111300.v1.1 MD14G1132500.v1.1
prunus_persica Prupe.5G124100_v2.0.a1
pyrus_communis pycom06g10430
rosa_chinensis RchiOBHm_Chr7g0186121
rosa_laevigata RLG00000004862
rosa_multiflora Rmu_sc0000194.1_g000030
rosa_roxburghii Rroxscaffold_3G00268410
rosa_rugosa Rorug06G0472200
rosa_samantha Rh7AG069400 Rh7BG085400 Rh7CG078700 Rh7DG078800
rosa_wichuraiana Rw7G006550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 10, 95
AccB1I GGYRCC 1 cut(s) 151
AfaI GTAC 4 cut(s) 130, 169, 370, 406
AflIII ACRYGT 1 cut(s) 37
AgeI ACCGGT 1 cut(s) 331
AgsI TTSAA 3 cut(s) 26, 318, 378
AhlI ACTAGT 1 cut(s) 407
AjnI CCWGG 2 cut(s) 241, 273
AluBI AGCT 4 cut(s) 13, 191, 262, 314
AluI AGCT 4 cut(s) 13, 191, 262, 314
Alw26I GTCTC 3 cut(s) 232, 420, 444
AlwNI CAGNNNCTG 1 cut(s) 161
ApeKI GCWGC 3 cut(s) 70, 191, 208
AsiGI ACCGGT 1 cut(s) 331
AsuHPI GGTGA 1 cut(s) 121
BanI GGYRCC 1 cut(s) 151
BarI GAAGNNNNNNTAC 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 34
BbvI GCAGC 3 cut(s) 57, 178, 220
BccI CCATC 1 cut(s) 286
BciT130I CCWGG 2 cut(s) 243, 275
BcoDI GTCTC 3 cut(s) 232, 420, 444
BcuI ACTAGT 1 cut(s) 407
BfaI CTAG 2 cut(s) 402, 408
BfmI CTRYAG 1 cut(s) 17
BfuAI ACCTGC 2 cut(s) 10, 95
BisI GCNGC 3 cut(s) 71, 192, 209
BlsI GCNGC 3 cut(s) 72, 193, 210
BmcAI AGTACT 1 cut(s) 406
Bme1390I CCNGG 2 cut(s) 243, 275
BmiI GGNNCC 2 cut(s) 153, 186
BmrFI CCNGG 2 cut(s) 243, 275
BmsI GCATC 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 34
BpmI CTGGAG 1 cut(s) 188
BsaAI YACGTR 1 cut(s) 310
BsaBI GATNNNNATC 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 242
BsaWI WCCGGW 1 cut(s) 331
BsaXI ACNNNNNCTCC 4 cut(s) 186, 216, 417, 447
Bse118I RCCGGY 1 cut(s) 331
Bse1I ACTGG 4 cut(s) 71, 155, 370, 376
Bse8I GATNNNNATC 1 cut(s) 144
BseBI CCWGG 2 cut(s) 243, 275
BseDI CCNNGG 1 cut(s) 242
BseJI GATNNNNATC 1 cut(s) 144
BseNI ACTGG 4 cut(s) 71, 155, 370, 376
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 3 cut(s) 57, 178, 220
BsgI GTGCAG 2 cut(s) 56, 177
BshNI GGYRCC 1 cut(s) 151
BshTI ACCGGT 1 cut(s) 331
BsiSI CCGG 2 cut(s) 149, 332
BslFI GGGAC 2 cut(s) 376, 401
BsmAI GTCTC 3 cut(s) 232, 420, 444
BsmBI CGTCTC 1 cut(s) 444
BsmFI GGGAC 2 cut(s) 376, 401
Bsp143I GATC 1 cut(s) 412
BspLI GGNNCC 2 cut(s) 153, 186
BspMAI CTGCAG 1 cut(s) 21
BspMI ACCTGC 2 cut(s) 10, 95
BspT107I GGYRCC 1 cut(s) 151
BsrFI RCCGGY 1 cut(s) 331
BsrI ACTGG 4 cut(s) 71, 155, 370, 376
BssAI RCCGGY 1 cut(s) 331
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 1 cut(s) 412
Bst2UI CCWGG 2 cut(s) 243, 275
Bst4CI ACNGT 3 cut(s) 163, 175, 239
Bst6I CTCTTC 1 cut(s) 336
BstBAI YACGTR 1 cut(s) 310
BstC8I GCNNGC 1 cut(s) 189
BstKTI GATC 1 cut(s) 415
BstMAI GTCTC 3 cut(s) 232, 420, 444
BstMBI GATC 1 cut(s) 412
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstNI CCWGG 2 cut(s) 243, 275
BstNSI RCATGY 1 cut(s) 41
BstSCI CCNGG 2 cut(s) 241, 273
BstSFI CTRYAG 1 cut(s) 17
BstSNI TACGTA 1 cut(s) 310
BstV1I GCAGC 3 cut(s) 57, 178, 220
BstV2I GAAGAC 1 cut(s) 34
BstXI CCANNNNNNTGG 1 cut(s) 242
BtsIMutI CAGTG 1 cut(s) 64
BveI ACCTGC 2 cut(s) 10, 95
Cac8I GCNNGC 1 cut(s) 189
CaiI CAGNNNCTG 1 cut(s) 161
Cfr10I RCCGGY 1 cut(s) 331
Csp6I GTAC 4 cut(s) 129, 168, 369, 405
CspAI ACCGGT 1 cut(s) 331
CviAII CATG 2 cut(s) 38, 47
CviJI RGCY 6 cut(s) 13, 70, 187, 191, 262, 314
CviKI_1 RGCY 6 cut(s) 13, 70, 187, 191, 262, 314
CviQI GTAC 4 cut(s) 129, 168, 369, 405
DpnI GATC 1 cut(s) 414
DpnII GATC 1 cut(s) 412
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
Eco105I TACGTA 1 cut(s) 310
EcoRII CCWGG 2 cut(s) 241, 273
Esp3I CGTCTC 1 cut(s) 444
FaeI CATG 2 cut(s) 41, 50
FaiI YATR 7 cut(s) 39, 48, 59, 125, 216, 221, 444
FaqI GGGAC 2 cut(s) 376, 401
FatI CATG 2 cut(s) 37, 46
Fnu4HI GCNGC 3 cut(s) 71, 192, 209
Fsp4HI GCNGC 3 cut(s) 71, 192, 209
FspBI CTAG 2 cut(s) 402, 408
GluI GCNGC 3 cut(s) 71, 192, 209
GsuI CTGGAG 1 cut(s) 188
HapII CCGG 2 cut(s) 149, 332
Hin1II CATG 2 cut(s) 41, 50
HincII GTYRAC 1 cut(s) 180
HindII GTYRAC 1 cut(s) 180
HinfI GANTC 3 cut(s) 344, 389, 428
HpaII CCGG 2 cut(s) 149, 332
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 180
Hpy188I TCNGA 1 cut(s) 449
Hpy188III TCNNGA 1 cut(s) 416
Hpy8I GTNNAC 1 cut(s) 180
HpyCH4III ACNGT 3 cut(s) 163, 175, 239
HpyCH4IV ACGT 2 cut(s) 309, 453
HpyCH4V TGCA 6 cut(s) 19, 33, 57, 73, 99, 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
HpySE526I ACGT 2 cut(s) 309, 453
Hsp92II CATG 2 cut(s) 41, 50
Kzo9I GATC 1 cut(s) 412
LmnI GCTCC 3 cut(s) 10, 184, 259
Lsp1109I GCAGC 3 cut(s) 57, 178, 220
LweI GCATC 1 cut(s) 92
MaeI CTAG 2 cut(s) 402, 408
MaeII ACGT 2 cut(s) 309, 453
MaeIII GTNAC 3 cut(s) 157, 322, 433
MalI GATC 1 cut(s) 414
MboI GATC 1 cut(s) 412
MboII GAAGA 3 cut(s) 17, 34, 353
MluCI AATT 2 cut(s) 298, 304
MlyI GAGTC 3 cut(s) 353, 383, 422
MmeI TCCRAC 2 cut(s) 237, 316
MseI TTAA 2 cut(s) 383, 457
MspA1I CMGCKG 1 cut(s) 191
MspI CCGG 2 cut(s) 149, 332
MspR9I CCNGG 2 cut(s) 243, 275
MvaI CCWGG 2 cut(s) 243, 275
MwoI GCNNNNNNNGC 1 cut(s) 96
NdeII GATC 1 cut(s) 412
NlaIII CATG 2 cut(s) 41, 50
NlaIV GGNNCC 2 cut(s) 153, 186
NmuCI GTSAC 1 cut(s) 322
NspI RCATGY 1 cut(s) 41
PciI ACATGT 1 cut(s) 37
PcsI WCGNNNNNNNCGW 1 cut(s) 113
PinAI ACCGGT 1 cut(s) 331
PkrI GCNGC 3 cut(s) 72, 193, 210
PleI GAGTC 3 cut(s) 352, 383, 422
PpsI GAGTC 3 cut(s) 352, 383, 422
Ppu21I YACGTR 1 cut(s) 310
PscI ACATGT 1 cut(s) 37
Psp6I CCWGG 2 cut(s) 241, 273
PspGI CCWGG 2 cut(s) 241, 273
PspN4I GGNNCC 2 cut(s) 153, 186
PstI CTGCAG 1 cut(s) 21
PstNI CAGNNNCTG 1 cut(s) 161
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 4 cut(s) 130, 169, 370, 406
RsaNI GTAC 4 cut(s) 129, 168, 369, 405
SaqAI TTAA 2 cut(s) 383, 457
SatI GCNGC 3 cut(s) 71, 192, 209
Sau3AI GATC 1 cut(s) 412
ScaI AGTACT 1 cut(s) 406
SchI GAGTC 3 cut(s) 353, 383, 422
ScrFI CCNGG 2 cut(s) 243, 275
SetI ASST 8 cut(s) 15, 24, 89, 193, 264, 312, 316, 456
SfaNI GCATC 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 17
SnaBI TACGTA 1 cut(s) 310
SpeI ACTAGT 1 cut(s) 407
Sse9I AATT 2 cut(s) 298, 304
SspMI CTAG 2 cut(s) 402, 408
StyD4I CCNGG 2 cut(s) 241, 273
TaaI ACNGT 3 cut(s) 163, 175, 239
TaiI ACGT 2 cut(s) 312, 456
TaqI TCGA 4 cut(s) 51, 116, 138, 415
TasI AATT 2 cut(s) 298, 304
TatI WGTACW 1 cut(s) 404
Tru1I TTAA 2 cut(s) 383, 457
Tru9I TTAA 2 cut(s) 383, 457
TscAI CASTG 1 cut(s) 71
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 3 cut(s) 70, 191, 208
Tsp45I GTSAC 1 cut(s) 322
TspGWI ACGGA 1 cut(s) 197
TspRI CASTG 1 cut(s) 71
XceI RCATGY 1 cut(s) 41
XcmI CCANNNNNNNNNTGG 1 cut(s) 239
XspI CTAG 2 cut(s) 402, 408
ZrmI AGTACT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.